View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2911-8-Insertion-6 (Length: 766)
Name: NF2911-8-Insertion-6
Description: NF2911-8
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2911-8-Insertion-6 |
 | |
|
| [»] chr7 (16 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 723; Significance: 0; HSPs: 16)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 723; E-Value: 0
Query Start/End: Original strand, 8 - 766
Target Start/End: Complemental strand, 19937567 - 19936809
Alignment:
| Q |
8 |
ctcctaacacatccttcggtccaattttgtttattccattcctctttgttccttggctcaaaccctttcaaacagctacatattggtgagctttgtgaat |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19937567 |
ctcctaacacatccttcggtccaattttgtttattccattcctctttgttccttggctcaaaccctttcaaacagctacatattggtgagctttgtgaat |
19937468 |
T |
|
| Q |
108 |
tacagcttgcaaaatgtccacatacaccataaacatcacattccatttcatgactattccatgttactttccattctttcttcttttcatcccaccattt |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19937467 |
tacagcttgcaaaatgtccacatacaccataaacatcacattccatttcatgactattccatgttactttccattctttcttcttttcatcccaccattt |
19937368 |
T |
|
| Q |
208 |
ctcttcacaatttccttctgaactcaaattatagattataagaccaactgtatctgatgttatttgaaagaatgaaacatttccttctccatcatctcca |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19937367 |
ctcttcacaatttccttctgaactcaaattatagattataagaccaactgtatctgatgttatttgaaagaatgaaacatttccttctccatcatctcca |
19937268 |
T |
|
| Q |
308 |
acatgtaaaccaccgagataatgagttgtcatatatggaagccctgtaaaaatcttaccattccacggaccagttcgccaatacggttgactttcattcc |
407 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||| |
|
|
| T |
19937267 |
acatgtaaaccaccgagataatgagttgtcatatatggaagccctgtaaaaatcttaccattccacggaccagttcgccaatatggttgattttcattcc |
19937168 |
T |
|
| Q |
408 |
atatgaacacttcaggtattgtaagcctttcaacactcaaagagaagcttccaatggatggatcataaggtattttccatgatgtttgttttactttctc |
507 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
19937167 |
atatgaacacttcaggtatagtaagcctttcaacactcaaagagaagcttccaatggatggatcataaggtgttttccatgatgtttgttttactttctc |
19937068 |
T |
|
| Q |
508 |
acctgttattttgttgctagtaagtttcatgtttggcagcattacatttgaaggatgctggaaactctcccacatggttctttctgttgtgccttcaagt |
607 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19937067 |
acctgttattttgttgctagtaagtttcatgtttggcagcattacatttgaaggatgctggaaactctcccacatggttctttctgttgtgccttcaagt |
19936968 |
T |
|
| Q |
608 |
agtacaaggttccctgaatctaaaagcttcaaacttgaattggttgcaacattcggtgcgttggatgtccaaatcacctctttctttccattcaatacca |
707 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
19936967 |
agtacaaggttccctgaatctaaaagcttcgaacttgaattggttgcaacattcggtgcgttggatgtccaaatcacctctttctttccgttcaatacca |
19936868 |
T |
|
| Q |
708 |
caagatcattgccatcatcagatattttaacaacaccagaagaatctttgagaggttgg |
766 |
Q |
| |
|
| |||||||| |||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19936867 |
cgagatcattaccattatcagatattttaacaacaccagaagaatctttgagaggttgg |
19936809 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 723; E-Value: 0
Query Start/End: Original strand, 8 - 766
Target Start/End: Complemental strand, 19968706 - 19967948
Alignment:
| Q |
8 |
ctcctaacacatccttcggtccaattttgtttattccattcctctttgttccttggctcaaaccctttcaaacagctacatattggtgagctttgtgaat |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19968706 |
ctcctaacacatccttcggtccaattttgtttattccattcctctttgttccttggctcaaaccctttcaaacagctacatattggtgagctttgtgaat |
19968607 |
T |
|
| Q |
108 |
tacagcttgcaaaatgtccacatacaccataaacatcacattccatttcatgactattccatgttactttccattctttcttcttttcatcccaccattt |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19968606 |
tacagcttgcaaaatgtccacatacaccataaacatcacattccatttcatgactattccatgttactttccattctttcttcttttcatcccaccattt |
19968507 |
T |
|
| Q |
208 |
ctcttcacaatttccttctgaactcaaattatagattataagaccaactgtatctgatgttatttgaaagaatgaaacatttccttctccatcatctcca |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19968506 |
ctcttcacaatttccttctgaactcaaattatagattataagaccaactgtatctgatgttatttgaaagaatgaaacatttccttctccatcatctcca |
19968407 |
T |
|
| Q |
308 |
acatgtaaaccaccgagataatgagttgtcatatatggaagccctgtaaaaatcttaccattccacggaccagttcgccaatacggttgactttcattcc |
407 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||| |
|
|
| T |
19968406 |
acatgtaaaccaccgagataatgagttgtcatatatggaagccctgtaaaaatcttaccattccacggaccagttcgccaatatggttgattttcattcc |
19968307 |
T |
|
| Q |
408 |
atatgaacacttcaggtattgtaagcctttcaacactcaaagagaagcttccaatggatggatcataaggtattttccatgatgtttgttttactttctc |
507 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
19968306 |
atatgaacacttcaggtatagtaagcctttcaacactcaaagagaagcttccaatggatggatcataaggtgttttccatgatgtttgttttactttctc |
19968207 |
T |
|
| Q |
508 |
acctgttattttgttgctagtaagtttcatgtttggcagcattacatttgaaggatgctggaaactctcccacatggttctttctgttgtgccttcaagt |
607 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19968206 |
acctgttattttgttgctagtaagtttcatgtttggcagcattacatttgaaggatgctggaaactctcccacatggttctttctgttgtgccttcaagt |
19968107 |
T |
|
| Q |
608 |
agtacaaggttccctgaatctaaaagcttcaaacttgaattggttgcaacattcggtgcgttggatgtccaaatcacctctttctttccattcaatacca |
707 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
19968106 |
agtacaaggttccctgaatctaaaagcttcgaacttgaattggttgcaacattcggtgcgttggatgtccaaatcacctctttctttccgttcaatacca |
19968007 |
T |
|
| Q |
708 |
caagatcattgccatcatcagatattttaacaacaccagaagaatctttgagaggttgg |
766 |
Q |
| |
|
| |||||||| |||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19968006 |
cgagatcattaccattatcagatattttaacaacaccagaagaatctttgagaggttgg |
19967948 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 135 - 368
Target Start/End: Original strand, 47602241 - 47602464
Alignment:
| Q |
135 |
cataaacatcacattccatttcatgactattccatgttactttccattctttcttcttttcatcccaccatttctcttcacaatttccttctgaactcaa |
234 |
Q |
| |
|
||||||||||||||||||||| | ||||||||| ||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||| |
|
|
| T |
47602241 |
cataaacatcacattccatttgagaactattccacgttactttccattctttcttcttttcaccccaccatttctcttcaaaatttccttctga------ |
47602334 |
T |
|
| Q |
235 |
attatagattataagaccaactgtatctgatgttatttg----aaagaatgaaacatttccttctccatcatctccaacatgtaaaccaccgagataatg |
330 |
Q |
| |
|
|||| ||||||||||||| ||| |||| |||||||||||| |||| |||||||| ||| |||||||||| |||| |||||| |
|
|
| T |
47602335 |
--------ttatgagaccaactgtattcaccgttgtttgttacaaagaatgaaacgtttctttctccattatcaccaacatgtataccattgagatatca |
47602426 |
T |
|
| Q |
331 |
agttgtcatatatggaagccctgtaaaaatcttaccat |
368 |
Q |
| |
|
|||| ||||||||||||||||| ||||||||| ||||| |
|
|
| T |
47602427 |
agttttcatatatggaagccctttaaaaatctcaccat |
47602464 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 591 - 718
Target Start/End: Original strand, 47602475 - 47602602
Alignment:
| Q |
591 |
ctgttgtgccttcaagtagtacaaggttccctgaatctaaaagcttcaaacttgaattggttgcaacattcggtgcgttggatgtccaaatcacctcttt |
690 |
Q |
| |
|
||||| ||| |||||||||||||||| || ||||| ||||||| || |||| ||||||||||||| |||||| || || |||| | |||||||||||| |
|
|
| T |
47602475 |
ctgttctgcattcaagtagtacaaggctctctgaacctaaaagtttggaactcgaattggttgcaatattcggcgcttttgatgactaaatcacctcttc |
47602574 |
T |
|
| Q |
691 |
ctttccattcaataccacaagatcattg |
718 |
Q |
| |
|
||||||||||| |||||||||||||||| |
|
|
| T |
47602575 |
ctttccattcagtaccacaagatcattg |
47602602 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 8 - 147
Target Start/End: Complemental strand, 20293176 - 20293037
Alignment:
| Q |
8 |
ctcctaacacatccttcggtccaattttgtttattccattcctctttgttccttggctcaaaccctttcaaacagctacatattggtgagctttgtgaat |
107 |
Q |
| |
|
||||||||||| || |||||||||| |||||| ||||||| ||| |||| || || |||| ||| ||||||||||||||||||||||||| |||| |
|
|
| T |
20293176 |
ctcctaacacacccaccggtccaattatgtttactccattcttctatgtttctgggtacaaatcctctcaaacagctacatattggtgagctcaatgaac |
20293077 |
T |
|
| Q |
108 |
tacagcttgcaaaatgtccacatacaccataaacatcaca |
147 |
Q |
| |
|
||||||||||||| ||||||| ||||||||||||||| |
|
|
| T |
20293076 |
tacagcttgcaaaggccccacatataccataaacatcaca |
20293037 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 8 - 97
Target Start/End: Original strand, 47602093 - 47602182
Alignment:
| Q |
8 |
ctcctaacacatccttcggtccaattttgtttattccattcctctttgttccttggctcaaaccctttcaaacagctacatattggtgag |
97 |
Q |
| |
|
||||||||||| || | ||||| |||||| ||||||||| ||||||||||||||| ||||||||||||||| ||||||||||| ||||| |
|
|
| T |
47602093 |
ctcctaacacacccaccagtccatttttgtctattccatttctctttgttccttggttcaaaccctttcaaatagctacatattagtgag |
47602182 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 65 - 150
Target Start/End: Complemental strand, 20242110 - 20242025
Alignment:
| Q |
65 |
tcaaaccctttcaaacagctacatattggtgagctttgtgaattacagcttgcaaaatgtccacatacaccataaacatcacattc |
150 |
Q |
| |
|
||||| ||||||||||| || || | ||||||||| |||||||||||||| ||||| |||||||| |||||||||||||||||| |
|
|
| T |
20242110 |
tcaaatcctttcaaacaactgcaaactggtgagctcaatgaattacagcttgtaaaatctccacatagaccataaacatcacattc |
20242025 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 65 - 205
Target Start/End: Complemental strand, 20262743 - 20262603
Alignment:
| Q |
65 |
tcaaaccctttcaaacagctacatattggtgagctttgtgaattacagcttgcaaaatgtccacatacaccataaacatcacattccatttcatgactat |
164 |
Q |
| |
|
||||| ||||||||||| || |||| |||||||| |||||||||||||| ||| | |||||| | |||||||||||||||||| | | || || | |
|
|
| T |
20262743 |
tcaaatcctttcaaacaactgcataccggtgagctcaatgaattacagcttgtaaattctccacagagaccataaacatcacattctgtgttttggcttt |
20262644 |
T |
|
| Q |
165 |
tccatgttactttccattctttcttcttttcatcccaccat |
205 |
Q |
| |
|
||||||| |||||| |||||| ||||| |||||||||||| |
|
|
| T |
20262643 |
tccatgtcactttcatttctttattcttatcatcccaccat |
20262603 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 452 - 537
Target Start/End: Complemental strand, 20287358 - 20287273
Alignment:
| Q |
452 |
aagcttccaatggatggatcataaggtattttccatgatgtttgttttactttctcacctgttattttgttgctagtaagtttcat |
537 |
Q |
| |
|
|||||||||| |||||||| |||| ||||||||||||| ||| |||||||||||||||| ||||||| || ||||||||||| |
|
|
| T |
20287358 |
aagcttccaacagatggatctgaagggtttttccatgatgtgagttgtactttctcacctgttcttttgtttcttgtaagtttcat |
20287273 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 24 - 120
Target Start/End: Original strand, 20169585 - 20169681
Alignment:
| Q |
24 |
cggtccaattttgtttattccattcctctttgttccttggctcaaaccctttcaaacagctacatattggtgagctttgtgaattacagcttgcaaa |
120 |
Q |
| |
|
||||||| || ||| ||||||||| ||| |||| || || ||||||||| |||||||||||||| |||||||||| ||||||||| |||||||| |
|
|
| T |
20169585 |
cggtccagttatgtatattccattgttctatgtttctgggttcaaaccctctcaaacagctacatgttggtgagctcaatgaattacaacttgcaaa |
20169681 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 9 - 111
Target Start/End: Original strand, 20006889 - 20006991
Alignment:
| Q |
9 |
tcctaacacatccttcggtccaattttgtttattccattcctctttgttccttggctcaaaccctttcaaacagctacatattggtgagctttgtgaatt |
108 |
Q |
| |
|
||||||||||||| | |||||||||||| ||||||| || | ||||| ||||| |||||||||| |||||| ||||| ||||| || | || |||||| |
|
|
| T |
20006889 |
tcctaacacatccattagtccaattttgtctattccactcttgattgtttcttggttcaaacccttccaaacacctacaaattggcgacccttttgaatt |
20006988 |
T |
|
| Q |
109 |
aca |
111 |
Q |
| |
|
||| |
|
|
| T |
20006989 |
aca |
20006991 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 464 - 537
Target Start/End: Complemental strand, 20301919 - 20301846
Alignment:
| Q |
464 |
gatggatcataaggtattttccatgatgtttgttttactttctcacctgttattttgttgctagtaagtttcat |
537 |
Q |
| |
|
||||||||| |||| |||||||||||||| ||||| ||| ||||||||| |||||||| ||| ||||||||| |
|
|
| T |
20301919 |
gatggatcagaagggcttttccatgatgttagttttgatttttcacctgttcttttgttgatagaaagtttcat |
20301846 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 365 - 421
Target Start/End: Original strand, 20169926 - 20169982
Alignment:
| Q |
365 |
ccattccacggaccagttcgccaatacggttgactttcattccatatgaacacttca |
421 |
Q |
| |
|
||||||||||| ||| |||||||||| ||| ||||| ||||||| |||||||||||| |
|
|
| T |
20169926 |
ccattccacggtccacttcgccaatatggtcgacttccattccaaatgaacacttca |
20169982 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 39 - 147
Target Start/End: Complemental strand, 20230186 - 20230078
Alignment:
| Q |
39 |
tattccattcctctttgttccttggctcaaaccctttcaaacagctacatattggtgagctttgtgaattacagcttgcaaaatgtccacatacaccata |
138 |
Q |
| |
|
|||||||||||| | ||||| || |||||||||||||||||||| || ||||| | ||| |||||||||||||| ||| ||||||| |||||| |
|
|
| T |
20230186 |
tattccattcctgtatgttcaccggatcaaaccctttcaaacagctgcaaattggcgtgctcaatgaattacagcttgtaaatgccccacatagaccata |
20230087 |
T |
|
| Q |
139 |
aacatcaca |
147 |
Q |
| |
|
||||||||| |
|
|
| T |
20230086 |
aacatcaca |
20230078 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 120
Target Start/End: Original strand, 20064059 - 20064140
Alignment:
| Q |
39 |
tattccattcctctttgttccttggctcaaaccctttcaaacagctacatattggtgagctttgtgaattacagcttgcaaa |
120 |
Q |
| |
|
|||||||||||| | || |||| || ||||| |||||||||||||| |||||||||| | | |||| ||||||||||||| |
|
|
| T |
20064059 |
tattccattcctgtatgctcctaggttcaaatcctttcaaacagctgcatattggtgtgttcaatgaactacagcttgcaaa |
20064140 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 480 - 537
Target Start/End: Original strand, 20064503 - 20064560
Alignment:
| Q |
480 |
ttttccatgatgtttgttttactttctcacctgttattttgttgctagtaagtttcat |
537 |
Q |
| |
|
||||||||||| || ||||| ||||||||||||| |||||||| ||| ||||||||| |
|
|
| T |
20064503 |
ttttccatgatcttagttttgatttctcacctgttcttttgttgatagaaagtttcat |
20064560 |
T |
|
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Target: chr4 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 452 - 538
Target Start/End: Original strand, 40825780 - 40825866
Alignment:
| Q |
452 |
aagcttccaatggatggatcataaggtattttccatgatgtttgttttactttctcacctgttattttgttgctagtaagtttcatg |
538 |
Q |
| |
|
|||||||||| |||||||| |||| ||||||||||||| ||| |||||||||||||||| |||||||||| |||||||||||| |
|
|
| T |
40825780 |
aagcttccaacagatggatctgaagggtttttccatgatgtgagttgtactttctcacctgttcttttgttgcttgtaagtttcatg |
40825866 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 147
Target Start/End: Original strand, 40820683 - 40820804
Alignment:
| Q |
26 |
gtccaattttgtttattccattcctctttgttccttggctcaaaccctttcaaacagctacatattggtgagctttgtgaattacagcttgcaaaatgtc |
125 |
Q |
| |
|
|||||||| ||| || ||||||| ||| |||| || || |||| ||| | ||||||||||||||||| ||||| | || ||||||||||||| | |
|
|
| T |
40820683 |
gtccaattatgtatactccattcttctatgtttctgggtacaaatcctctaaaacagctacatattggcgagctcaataaactacagcttgcaaatgctg |
40820782 |
T |
|
| Q |
126 |
cacatacaccataaacatcaca |
147 |
Q |
| |
|
|||||| ||||||||||||||| |
|
|
| T |
40820783 |
cacatataccataaacatcaca |
40820804 |
T |
|
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