View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2911-8-Insertion-8 (Length: 654)
Name: NF2911-8-Insertion-8
Description: NF2911-8
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2911-8-Insertion-8 |
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Alignment Details
Target: chr1 (Bit Score: 345; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 8 - 414
Target Start/End: Original strand, 39995759 - 39996169
Alignment:
| Q |
8 |
tcttgttcctatatgaaagaacaagatataaatttattcgcctctaaggaactaaattgggattttcgtgttttgccaaggacactaacttgtctgttaa |
107 |
Q |
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| T |
39995759 |
tcttcttcctatattaaagaacaagatatcaatttattcacctctaaggaactaaaatgggattttcgtgttttgccaaggacactaacttgtctgttaa |
39995858 |
T |
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| Q |
108 |
tttttcgtgacaattctacaatgtcagctaactaacatcgttaatgcacaacgtaaataacttaacagttcacgttattgtttaagacacaatttactct |
207 |
Q |
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| T |
39995859 |
tttttcgttacaattctacaatgtcagctaactaacatcgttaatgcacaacgtaaataacttaacagttcacgttattgtttaagacacaatttactct |
39995958 |
T |
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| Q |
208 |
tagtgattaatattaactcagcgattatattgtcccgaccaatttttgttgggact---aaaaattgtatttttccatcggaaactatattgcttgtttt |
304 |
Q |
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| T |
39995959 |
tagtgattaatattaactcagcgattatactgtcccgaccaatttttgttgggactaaaaaaaattgtatttttccatcggaaactatattggttgtttt |
39996058 |
T |
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| Q |
305 |
tctaaagggactagaatgaga-cttcattcttttgcaatatattattaaagattaaaattaattttgatattaccttaaaactttgaaaatgattgactg |
403 |
Q |
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| T |
39996059 |
tgtaaagagactagaatgagaccttcattcttttgcgatatattattaaagattaaaattaattttgatattaccttaaaactttgaaaatgattgactg |
39996158 |
T |
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| Q |
404 |
ataataacaag |
414 |
Q |
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| T |
39996159 |
ataataacaag |
39996169 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 486 - 654
Target Start/End: Original strand, 39996254 - 39996422
Alignment:
| Q |
486 |
atatactattaagagtttttgttatggtttagtagaatatgacaaggtaattaatatatcttctctagttaaaattgtatattgttgagttttatcttga |
585 |
Q |
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| T |
39996254 |
atatactattaagagtttttgctatgttttagtagaatatgacaaggtaattaatatatcttctctagttaaaattttatattgttgagttttatcttga |
39996353 |
T |
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| Q |
586 |
cacaagatacactttaaaaataactaaagagtgagagcaaccataaatagtctcgttactgaaattgta |
654 |
Q |
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| T |
39996354 |
caaaagatacacgttaaaaataaaaaaaggatgagagcgaccataaatagcctccttactgaaattgta |
39996422 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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