View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2911-Insertion-15 (Length: 964)

Name: NF2911-Insertion-15
Description: NF2911
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2911-Insertion-15
NF2911-Insertion-15
[»] chr3 (19 HSPs)
chr3 (8-551)||(26674240-26674783)
chr3 (581-964)||(26674799-26675182)
chr3 (403-551)||(26730658-26730807)
chr3 (211-316)||(26730539-26730644)
chr3 (787-864)||(26713372-26713449)
chr3 (803-884)||(26743635-26743716)
chr3 (780-936)||(26695085-26695241)
chr3 (778-938)||(26732233-26732393)
chr3 (787-867)||(26733383-26733463)
chr3 (778-936)||(26690924-26691082)
chr3 (802-864)||(26736623-26736685)
chr3 (802-848)||(26698235-26698281)
chr3 (803-867)||(26750560-26750624)
chr3 (778-833)||(26692245-26692300)
chr3 (802-867)||(26691985-26692050)
chr3 (129-171)||(26730493-26730535)
chr3 (166-203)||(26695322-26695359)
chr3 (899-955)||(26713484-26713540)
chr3 (899-945)||(26736720-26736766)
[»] chr5 (1 HSPs)
chr5 (74-120)||(30926040-30926086)


Alignment Details
Target: chr3 (Bit Score: 516; Significance: 0; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 516; E-Value: 0
Query Start/End: Original strand, 8 - 551
Target Start/End: Original strand, 26674240 - 26674783
Alignment:
Q  8 ataaccgatttggtaaaaatttgtgagtaaattaaataaaaggatttttattataggataccaacggatactcaacctggattgttgagagcaaagaatg 107  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26674240 ataaccgatttggtaaaaattagtgagtaaattaaataaaaggatttttattataggataccaacggatactcaacctggattgttgagagcaaagaatg 26674339  T
Q  108 catcaaagaagctgattgaattagggttagagttcactccagcagaacaaattatcaaggatgcagttgagtgtttgaagagtagaggtttggtttaact 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26674340 catcaaagaagctgattgaattagggttagagttcactccagcagaagaaattatcaaggatgcagttgagtgtttgaagagtagaggtttggtttaact 26674439  T
Q  208 tgaagaaacctattggggctgaatacaatgtgacatgtgatgatggttttctcattgttcatgtgattcccttttctatttttaaatttatgctgtgtgc 307  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  26674440 tgaagaaacctatgggggctgaatacaatgtgacatgtgatgatggttttctcattgttcatgtgattcccttttctatttttaaatttatgttgtgtgc 26674539  T
Q  308 gtataattagcatgttaaataaaggttcacatgtattcagtcactataactatcacatttgactagaattcttatatgtgaattcttgtggttttataag 407  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26674540 gtataattagcatgttaaataaaggttcacatgtattcagtcactataactatcacatttgactagaattcttatatgtgaattcttgtggttttataag 26674639  T
Q  408 attggacggtttaatcttcactacttaattgaaaatgcaatttgtctattctatttccttgaaattgctttgcttgtcaccttattgttggtgttccaat 507  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||    
T  26674640 attggacggtttaatcttcactacttaattgaaaatgcaatttgtctattctatttccttgaaattgctttgcttgtcacctaattgttggtattccaat 26674739  T
Q  508 agcagtacaagaaaattccaataattgatttagaaaagcttttt 551  Q
    | ||||||||||||||||||||||||||||||||||||||||||    
T  26674740 aacagtacaagaaaattccaataattgatttagaaaagcttttt 26674783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 581 - 964
Target Start/End: Original strand, 26674799 - 26675182
Alignment:
Q  581 tgtagaaaatgaagtttttccagcttgaaatgagatttttggaagtgaaataagaaaataacaagtcaattttaggactccaaattcagcaacactttct 680  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  26674799 tgtagaaaatgaagtttttccagcttgaaatgagatttttggaagtgaaataagaaaataacaagtcaattttatgactccaaattcagcaacactttct 26674898  T
Q  681 ggttttttattctagtcattctgtggattttcaccaaggatatgtatttccttccnnnnnnnnnnnnnctatatggcatgatatatagatggtgtactca 780  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||              |||||||||||||||||||||||||||||||    
T  26674899 ggttttttattctagtcattctgtggattttcaccaaggatatgtatttccttccttttttattttttttatatggcatgatatatagatggtgtactca 26674998  T
Q  781 agaatcatgttgatgagtttggagcctctcaacaacttgactcatggtgggtctaacatctttctctttctctacacaatccaaagccaccactgccaag 880  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26674999 agaatcatgttgatgactttggagcctctcaacaacttgactcatggtgggtctaacatctttctctttctctacacaatccaaagccaccactgccaag 26675098  T
Q  881 gtcttcaattgaacaatgtcataatttaatcccaatgcagggtcaactatttgttcaatccaacatcccacttctgattctttc 964  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26675099 gtcttcaattgaacaatgtcataatttaatcccaatgcagggtcaactatttgttcaatccaacatcccacttctgattctttc 26675182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 403 - 551
Target Start/End: Original strand, 26730658 - 26730807
Alignment:
Q  403 ataagattggacggtttaatcttcactacttaattgaaaatgcaatttgtctattctatttccttgaaa-ttgctttgcttgtcaccttattgttggtgt 501  Q
    |||||||| |||| |||||||||||||||||||||| |||||| ||||||||||||| ||| ||||||| |||||||||||||||||| |||||||||||    
T  26730658 ataagatttgacgatttaatcttcactacttaattggaaatgccatttgtctattctgtttacttgaaatttgctttgcttgtcacctaattgttggtgt 26730757  T
Q  502 tccaatagcagtacaagaaaattccaataattgatttagaaaagcttttt 551  Q
    |||||||||||||||||    |||||||||| ||||||| ||||| ||||    
T  26730758 tccaatagcagtacaagttggttccaataatggatttagcaaagcctttt 26730807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 211 - 316
Target Start/End: Original strand, 26730539 - 26730644
Alignment:
Q  211 agaaacctattggggctgaatacaatgtgacatgtgatgatggttttctcattgttcatgtgattcccttttctatttttaaatttatgctgtgtgcgta 310  Q
    |||||||||| ||||||||||||||||||||||||| ||||||| |  |||||| |||||||||||| |||||||||||||| |||||| | ||| ||||    
T  26730539 agaaacctatgggggctgaatacaatgtgacatgtggtgatggtgtattcattgctcatgtgattcctttttctatttttaattttatgttatgttcgta 26730638  T
Q  311 taatta 316  Q
    ||||||    
T  26730639 taatta 26730644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 58; E-Value: 7e-24
Query Start/End: Original strand, 787 - 864
Target Start/End: Original strand, 26713372 - 26713449
Alignment:
Q  787 atgttgatgagtttggagcctctcaacaacttgactcatggtgggtctaacatctttctctttctctacacaatccaa 864  Q
    |||||||||| || |||||||||||||||||||||| ||||||||||||||||||||||||| || ||||||||||||    
T  26713372 atgttgatgacttaggagcctctcaacaacttgacttatggtgggtctaacatctttctcttcctgtacacaatccaa 26713449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 58; E-Value: 7e-24
Query Start/End: Original strand, 803 - 884
Target Start/End: Original strand, 26743635 - 26743716
Alignment:
Q  803 agcctctcaacaacttgactcatggtgggtctaacatctttctctttctctacacaatccaaagccaccactgccaaggtct 884  Q
    |||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||| ||  ||||||| ||||    
T  26743635 agcctctcaacaacttgactcatggtgggtctaacatctttctcttcctttacacaatccaaagcaacatctgccaaagtct 26743716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 53; E-Value: 7e-21
Query Start/End: Original strand, 780 - 936
Target Start/End: Complemental strand, 26695241 - 26695085
Alignment:
Q  780 aagaatcatgttgatgagtttggagcctctcaacaacttgactcatggtgggtctaacatctttctctttctctacacaatccaaagccaccactgccaa 879  Q
    |||||||||||| ||||||||| ||| | |||||||||| ||||||| | ||||| |  |||||||||| ||| ||||| |  | ||| |||| || |||    
T  26695241 aagaatcatgttcatgagtttgaagcatttcaacaacttcactcatgttaggtctcatgtctttctcttcctcaacacactttagagcaaccattgtcaa 26695142  T
Q  880 ggtcttcaattgaacaatgtcataatttaatcccaatgcagggtcaactatttgttc 936  Q
     |||| ||||| ||| |||||||||||| ||||||||| |||||| |||||||||||    
T  26695141 agtctccaatttaaccatgtcataatttgatcccaatgtagggtctactatttgttc 26695085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 53; E-Value: 7e-21
Query Start/End: Original strand, 778 - 938
Target Start/End: Complemental strand, 26732393 - 26732233
Alignment:
Q  778 tcaagaatcatgttgatgagtttggagcctctcaacaacttgactcatggtgggtctaacatctttctctttctctacacaatccaaagccaccactgcc 877  Q
    |||||||||||||| ||||||||| ||| | |||||||||| ||||||| | ||||| |  |||||||||| ||| ||||| |  | ||| |||| || |    
T  26732393 tcaagaatcatgttcatgagtttgaagcatttcaacaacttcactcatgttaggtctcatgtctttctcttcctcaacacactttagagcaaccattgtc 26732294  T
Q  878 aaggtcttcaattgaacaatgtcataatttaatcccaatgcagggtcaactatttgttcaa 938  Q
    || |||| | ||| ||| |||||||||||| ||||||||| |||||| |||||||||||||    
T  26732293 aaagtctccgatttaaccatgtcataatttgatcccaatgtagggtctactatttgttcaa 26732233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 53; E-Value: 7e-21
Query Start/End: Original strand, 787 - 867
Target Start/End: Original strand, 26733383 - 26733463
Alignment:
Q  787 atgttgatgagtttggagcctctcaacaacttgactcatggtgggtctaacatctttctctttctctacacaatccaaagc 867  Q
    ||||| |||| || ||||||||||||||||||||||||||||||||||||||||||||||||   | ||||||||||||||    
T  26733383 atgttaatgacttaggagcctctcaacaacttgactcatggtgggtctaacatctttctcttcagccacacaatccaaagc 26733463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 778 - 936
Target Start/End: Complemental strand, 26691082 - 26690924
Alignment:
Q  778 tcaagaatcatgttgatgagtttggagcctctcaacaacttgactcatggtgggtctaacatctttctctttctctacacaatccaaagccaccactgcc 877  Q
    |||||||||||||| ||||||||| ||| | |||||||||| ||||||| | ||||| |  |||||||||| ||| ||||| |  |  || |||| || |    
T  26691082 tcaagaatcatgttcatgagtttgaagcatttcaacaacttcactcatgttaggtctcatgtctttctcttcctcaacacactttagtgcaaccattgtc 26690983  T
Q  878 aaggtcttcaattgaacaatgtcataatttaatcccaatgcagggtcaactatttgttc 936  Q
    || |||| ||||| ||| |||||||||||| ||||||||| |||||| |||||||||||    
T  26690982 aaagtctccaatttaaccatgtcataatttgatcccaatgtagggtctactatttgttc 26690924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 802 - 864
Target Start/End: Original strand, 26736623 - 26736685
Alignment:
Q  802 gagcctctcaacaacttgactcatggtgggtctaacatctttctctttctctacacaatccaa 864  Q
    |||||||||||||||||||||||||||||||||||||||||| |||| || ||||||||||||    
T  26736623 gagcctctcaacaacttgactcatggtgggtctaacatctttatcttcctgtacacaatccaa 26736685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 802 - 848
Target Start/End: Original strand, 26698235 - 26698281
Alignment:
Q  802 gagcctctcaacaacttgactcatggtgggtctaacatctttctctt 848  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  26698235 gagcctctcaacaacttgactcatggtgggtctaacatctttctctt 26698281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 803 - 867
Target Start/End: Original strand, 26750560 - 26750624
Alignment:
Q  803 agcctctcaacaacttgactcatggtgggtctaacatctttctctttctctacacaatccaaagc 867  Q
    |||||||||||||||||||||||||| |||||||||||||| ||||  | |||||||||||||||    
T  26750560 agcctctcaacaacttgactcatggtaggtctaacatctttatcttcttgtacacaatccaaagc 26750624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 778 - 833
Target Start/End: Original strand, 26692245 - 26692300
Alignment:
Q  778 tcaagaatcatgttgatgagtttggagcctctcaacaacttgactcatggtgggtc 833  Q
    |||| ||||||||| |||| ||||||||||||||||||||||||||||||||||||    
T  26692245 tcaacaatcatgttcatgactttggagcctctcaacaacttgactcatggtgggtc 26692300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 802 - 867
Target Start/End: Original strand, 26691985 - 26692050
Alignment:
Q  802 gagcctctcaacaacttgactcatggtgggtctaacatctttctctttctctacacaatccaaagc 867  Q
    ||||||||||||||||||||||||||| |||||||||||||| ||||   | ||||||||||||||    
T  26691985 gagcctctcaacaacttgactcatggtaggtctaacatctttttcttcagccacacaatccaaagc 26692050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 129 - 171
Target Start/End: Original strand, 26730493 - 26730535
Alignment:
Q  129 tagggttagagttcactccagcagaacaaattatcaaggatgc 171  Q
    |||| |||||||| |||||||||||||||||||||||||||||    
T  26730493 taggtttagagtttactccagcagaacaaattatcaaggatgc 26730535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 166 - 203
Target Start/End: Original strand, 26695322 - 26695359
Alignment:
Q  166 ggatgcagttgagtgtttgaagagtagaggtttggttt 203  Q
    |||||||||||||||| |||||||||||||||||||||    
T  26695322 ggatgcagttgagtgtatgaagagtagaggtttggttt 26695359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 899 - 955
Target Start/End: Original strand, 26713484 - 26713540
Alignment:
Q  899 tcataatttaatcccaatgcagggtcaactatttgttcaatccaacatcccacttct 955  Q
    ||||||||| ||||||||||||||||||| |||| ||||| |||||| || ||||||    
T  26713484 tcataatttgatcccaatgcagggtcaacaatttcttcaacccaacaaccaacttct 26713540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 899 - 945
Target Start/End: Original strand, 26736720 - 26736766
Alignment:
Q  899 tcataatttaatcccaatgcagggtcaactatttgttcaatccaaca 945  Q
    ||||||||| ||||||||||||||||||| |||| ||||| ||||||    
T  26736720 tcataatttgatcccaatgcagggtcaacaatttcttcaacccaaca 26736766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000009; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 74 - 120
Target Start/End: Original strand, 30926040 - 30926086
Alignment:
Q  74 gatactcaacctggattgttgagagcaaagaatgcatcaaagaagct 120  Q
    ||||| ||||||||| |||||||||||||| ||| ||||||||||||    
T  30926040 gatacacaacctggactgttgagagcaaaggatggatcaaagaagct 30926086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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