View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2911-Insertion-17 (Length: 904)

Name: NF2911-Insertion-17
Description: NF2911
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2911-Insertion-17
NF2911-Insertion-17
[»] chr8 (13 HSPs)
chr8 (8-904)||(454964-455872)
chr8 (253-460)||(467683-467890)
chr8 (198-455)||(474722-474979)
chr8 (198-460)||(446673-446935)
chr8 (332-454)||(480070-480192)
chr8 (535-625)||(474546-474636)
chr8 (528-625)||(446512-446609)
chr8 (743-821)||(466750-466828)
chr8 (517-657)||(467485-467626)
chr8 (517-650)||(479856-479990)
chr8 (761-821)||(474235-474295)
chr8 (736-821)||(446016-446101)
chr8 (743-821)||(479701-479779)
[»] chr2 (2 HSPs)
chr2 (198-456)||(27491398-27491653)
chr2 (744-804)||(27493542-27493602)


Alignment Details
Target: chr8 (Bit Score: 725; Significance: 0; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 725; E-Value: 0
Query Start/End: Original strand, 8 - 904
Target Start/End: Complemental strand, 455872 - 454964
Alignment:
Q  8 aatatattatatatgcatgacaagagagaccaagacgagttttatcttcttaactagtgctctaagagatgcataaccctaaagttttttaccatggtga 107  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||    
T  455872 aatatattatatatgcatgataagagagaccaagacgagttttatcttcttaactagtgctctacgagacgcataaccctaaagttttttaccatggtga 455773  T
Q  108 agttggtttttaaccaataaa---------gcacatggtttcatcgtacgtaggccctcaacctca------cccactaaaagtgatacttacattgtca 192  Q
    |||||||||||||||||||||         |||||||||||||||||||||||| |||||||||||      |||||||||||||||||||| ||||| |    
T  455772 agttggtttttaaccaataaatcaaataaagcacatggtttcatcgtacgtaggtcctcaacctcaacctcacccactaaaagtgatacttatattgtta 455673  T
Q  193 caatcaaatacctgcaaaattagccaaattgagccggcaacactacttcccaacagaaagagacaaccaatcaaccaattctcatcactttccaaggttg 292  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  455672 caatcaaatacctgcaaaattagccaaattgagccggcaacactacttcccaacagaaagagacaaccaatcaaccaattctcatcactttccaaggttg 455573  T
Q  293 tggtcatcattgtttttgaaggcatcttatgatctgcatttagtagttttggacccttcaataatgtcatggaca------ctgctccagtaacacatat 386  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      |||||||||||||||||||    
T  455572 tggtcatcattgtttttgaaggcatcttatgatctgcatttagtagttttggacccttcaataatgtcatggacagtgacactgctccagtaacacatat 455473  T
Q  387 cattgtcccaactattttggctatagttctcaaactttgaatattcactttctccattctgtaatatattcaataaaaatgattcaaactcaacaaaagt 486  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  455472 cattgtcccaactattttggctatagttctcaaactttgaatattcactttctccattctgtaatatattcaataaaaatgattcaaactcaacaaaagt 455373  T
Q  487 aattaagttgagtttagtaagattagtatataattacccaacaaaggttgctataacaaatgtgactgctggagtaagattgatcatggcagttgcagtt 586  Q
    ||    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  455372 aa----gttgagtttagtaagattagtatataattacccaacaaaggttgctataacaaatgtgactgctggagtaagattgatcatggcagttgcagtt 455277  T
Q  587 gaagaagatgatagatatagaccctcaaaatataaa-tttgatataacgtaatgctgcaaaatatcccaacaaaaataaacataaaagagtcaacttttt 685  Q
    |||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  455276 gaagaagatgatagatatagaccctcaaaatataaattttgatataaagtaatgctgcaaaatatcccaacaaaaataaacataaaagagtcaacttttt 455177  T
Q  686 atcaatttcacatcataacgataagcaccatattcatattgagaagaaaaagaaaaaggaaacaaacccaattagtgaggtcatgaaaatccaggaaaaa 785  Q
    |||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  455176 atcaatttcacatcataacgataagcacc--attcatattgagaagaaaaagaaaaaggaaacaaacccaattagtgaggtcatgaaaatccaggaaaaa 455079  T
Q  786 cttgttaaatttaaggaataagagcgagagtttctcttctcctgtgnnnnnnnggaatagaaacaataaattacttaatagactttagat-agaggaaag 884  Q
    |||||||||||||||||||||||||||||||     ||||||||||       ||||||||||||||||||||||||||| ||||||||| |||||||||    
T  455078 cttgttaaatttaaggaataagagcgagagt-----ttctcctgtgaaaaaaaggaatagaaacaataaattacttaataaactttagataagaggaaag 454984  T
Q  885 gatagataaggtggtgatag 904  Q
    ||||||||||||||||||||    
T  454983 gatagataaggtggtgatag 454964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 95; E-Value: 5e-46
Query Start/End: Original strand, 253 - 460
Target Start/End: Complemental strand, 467890 - 467683
Alignment:
Q  253 agacaaccaatcaaccaattctcatcactttc---caaggttgtggtcatcattgtttttgaaggcatcttatgatctgcatttagtagttttggaccct 349  Q
    ||||| |||| ||||||||||||||||||| |    |||||||||| ||| |||| ||||||| | |||||   ||||||||||||||||||||||||||    
T  467890 agacatccaagcaaccaattctcatcacttcctaataaggttgtggccatgattgattttgaaagtatctt---atctgcatttagtagttttggaccct 467794  T
Q  350 tcaataatgtcatggacactgctccagtaacacatatcattgtcccaactattttggctatagttctcaaactttgaatattcactttctccattctgta 449  Q
    |||| ||||  || |||||||||||| | |||||||| |||||||| |||||||||||||||||||| | |||| ||||||||||||| |||||||||||    
T  467793 tcaacaatgcaattgacactgctccacttacacatataattgtccccactattttggctatagttcttatacttcgaatattcactttttccattctgta 467694  T
Q  450 atatattcaat 460  Q
    ||||| |||||    
T  467693 atataatcaat 467683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 198 - 455
Target Start/End: Complemental strand, 474979 - 474722
Alignment:
Q  198 aaatacctgcaaaattagccaaattgagccggcaacactacttcccaacagaaagagacaaccaatcaaccaattctcatcactttccaaggttgtggtc 297  Q
    ||||||||||||||| ||||||| ||| | |||||||||||||||||| ||| | | ||| |||| ||||||| | ||||||||  |  ||||| ||| |    
T  474979 aaatacctgcaaaatgagccaaagtgaccaggcaacactacttcccaaaagatacacacatccaagcaaccaactatcatcactaccggaggttatggcc 474880  T
Q  298 atcattgtttttgaaggcatcttatgatctgcatttagtagttttggacccttcaataatgtcatggacactgctccagtaacacatatcattgtcccaa 397  Q
    || || | ||||| ||| |   | |  |||||||||||||| |||||||||||||| ||||  || |||| |||||||  ||||||||| | |||||| |    
T  474879 atgatagattttgtaggtagtatgttttctgcatttagtagctttggacccttcaacaatgctatagacaatgctccacaaacacatattaatgtcccta 474780  T
Q  398 ctattttggctatagttctcaaactttgaatattcactttctccattctgtaatatat 455  Q
    |||||||||||||||||||||||||| |||| || |||||||||||||||||||||||    
T  474779 ctattttggctatagttctcaaacttcgaatgttgactttctccattctgtaatatat 474722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 78; E-Value: 7e-36
Query Start/End: Original strand, 198 - 460
Target Start/End: Complemental strand, 446935 - 446673
Alignment:
Q  198 aaatacctgcaaaattagccaaattgagccggcaacactacttcccaacagaaagagacaaccaatcaaccaatt---ctcatcactttccaaggttgtg 294  Q
    ||||||||||||||| |||||| |||| ||  ||||| |||||||||| ||||  ||||| ||||  ||||| ||   ||||||||||  | ||||||||    
T  446935 aaatacctgcaaaatgagccaagttgaccctccaacagtacttcccaaaagaattagacatccaagaaaccagttgttctcatcacttgtcgaggttgtg 446836  T
Q  295 gtcatcattgtttttgaaggcatcttatgatctgcatttagtagttttggacccttcaataatgtcatggacactgctccagtaacacatatcattgtcc 394  Q
    | ||| |||| ||||||||  || || |   |||||||||  |||||||||||||| || ||||  ||||||| |||||||  ||||||||| ||||| |    
T  446835 gccatgattgattttgaagatatatttt---ctgcatttaaaagttttggaccctttaacaatgcgatggacattgctccacaaacacatattattgttc 446739  T
Q  395 caactattttggctatagttctcaaactttgaatattcactttctccattctgtaatatattcaat 460  Q
    | |||||||||||||||||||||| |||| ||||||| | |||||||||||||||||||| |||||    
T  446738 ccactattttggctatagttctcatacttcgaatattgaatttctccattctgtaatataatcaat 446673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 332 - 454
Target Start/End: Complemental strand, 480192 - 480070
Alignment:
Q  332 ttagtagttttggacccttcaataatgtcatggacactgctccagtaacacatatcattgtcccaactattttggctatagttctcaaactttgaatatt 431  Q
    ||||||| |||||||||||||| ||||  || || ||||||||| | | |||||||| |||||| |||||||||||||||||||||| |||| |||||||    
T  480192 ttagtagctttggacccttcaacaatgcaatagatactgctccacttatacatatcactgtccccactattttggctatagttctcatacttcgaatatt 480093  T
Q  432 cactttctccattctgtaatata 454  Q
     ||||||||||||||||||||||    
T  480092 tactttctccattctgtaatata 480070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 63; E-Value: 7e-27
Query Start/End: Original strand, 535 - 625
Target Start/End: Complemental strand, 474636 - 474546
Alignment:
Q  535 tgctataacaaatgtgactgctggagtaagattgatcatggcagttgcagttgaagaagatgatagatatagaccctcaaaatataaattt 625  Q
    ||||||||||||||||||||| ||| |||||||| |||||||| ||||| |||||||||| ||||||||||||||||||||||||| ||||    
T  474636 tgctataacaaatgtgactgcaggaataagattggtcatggcacttgcaattgaagaagaagatagatatagaccctcaaaatatagattt 474546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 528 - 625
Target Start/End: Complemental strand, 446609 - 446512
Alignment:
Q  528 caaaggttgctataacaaatgtgactgctggagtaagattgatcatggcagttgcagttgaagaagatgatagatatagaccctcaaaatataaattt 625  Q
    |||||| |||||| |||||||||| ||||||| |||||||| |||||||| ||||| |||||| ||| ||||||||||||||||||||||||||||||    
T  446609 caaaggctgctattacaaatgtgattgctggaataagattgttcatggcacttgcaattgaagcagaagatagatatagaccctcaaaatataaattt 446512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 743 - 821
Target Start/End: Complemental strand, 466828 - 466750
Alignment:
Q  743 ggaaacaaacccaattagtgaggtcatgaaaatccaggaaaaacttgttaaatttaaggaataagagcgagagtttctc 821  Q
    |||||||||||||||||||||||||||||||||| ||||||||||  ||||||| |||||||| |||| ||||||||||    
T  466828 ggaaacaaacccaattagtgaggtcatgaaaatcaaggaaaaactccttaaattcaaggaatatgagccagagtttctc 466750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 517 - 657
Target Start/End: Complemental strand, 467626 - 467485
Alignment:
Q  517 taattacccaacaaaggttgctataacaaatgtgactgctggagtaagattgatcatggcagttgcagttgaagaagatgatagatatagaccctcaaaa 616  Q
    ||||||||| || |||| ||| || |||||||||||||| |||  |||||||   |||||| |||||  ||||||||| || ||||||||||||||||||    
T  467626 taattaccctactaaggctgcaattacaaatgtgactgccggaagaagattggaaatggcacttgcaactgaagaagaagaaagatatagaccctcaaaa 467527  T
Q  617 tataaa-tttgatataacgtaatgctgcaaaatatcccaaca 657  Q
    |||||| ||||||  || |||||||||||| |||||||||||    
T  467526 tataaattttgattcaatgtaatgctgcaatatatcccaaca 467485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 517 - 650
Target Start/End: Complemental strand, 479990 - 479856
Alignment:
Q  517 taattacccaacaaaggttgctataacaaatgtgactgctggagtaagattgatcatggcagttgcagttgaagaagatgatagatatagaccctcaaaa 616  Q
    ||||||||| ||||||| |||||| ||||||||||||||||||  ||| |||  ||||||| |||||  ||||| ||| | |||| ||| ||||||||||    
T  479990 taattaccctacaaaggctgctattacaaatgtgactgctggaacaaggttggacatggcacttgcaactgaagcagaagctagaaatataccctcaaaa 479891  T
Q  617 tataaa-tttgatataacgtaatgctgcaaaatat 650  Q
     ||||| ||||||  || |||||||||||| ||||    
T  479890 aataaattttgattcaatgtaatgctgcaacatat 479856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 761 - 821
Target Start/End: Complemental strand, 474295 - 474235
Alignment:
Q  761 tgaggtcatgaaaatccaggaaaaacttgttaaatttaaggaataagagcgagagtttctc 821  Q
    |||||||||||||||| ||||||||||  ||||||||||||||||||||  ||||||||||    
T  474295 tgaggtcatgaaaatcaaggaaaaactccttaaatttaaggaataagaggcagagtttctc 474235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 736 - 821
Target Start/End: Complemental strand, 446101 - 446016
Alignment:
Q  736 agaaaaaggaaacaaacccaattagtgaggtcatgaaaatccaggaaaaacttgttaaatttaaggaataagagcgagagtttctc 821  Q
    |||||| | ||||||||| ||||||||| |||||||| ||||||||||||||  |||| |||||||| || |||  ||||||||||    
T  446101 agaaaatgaaaacaaacctaattagtgaagtcatgaatatccaggaaaaactccttaagtttaaggagtaggaggcagagtttctc 446016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 743 - 821
Target Start/End: Complemental strand, 479779 - 479701
Alignment:
Q  743 ggaaacaaacccaattagtgaggtcatgaaaatccaggaaaaacttgttaaatttaaggaataagagcgagagtttctc 821  Q
    |||||| ||||||||||||||||| | ||| | | | ||||||||  ||||||||||||||||||||| ||| ||||||    
T  479779 ggaaactaacccaattagtgaggttaagaataacaaagaaaaactccttaaatttaaggaataagagccagaatttctc 479701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 79; Significance: 2e-36; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 198 - 456
Target Start/End: Original strand, 27491398 - 27491653
Alignment:
Q  198 aaatacctgcaaaattagccaaattgagccggcaacactacttcccaacagaaagagacaaccaatcaaccaattctcatcactttccaaggttgtggtc 297  Q
    ||||||||||||||| ||||||| ||| | ||||||||  ||||| || ||||  | ||| |||| ||||||||||||||||||| | |||||||||       
T  27491398 aaatacctgcaaaataagccaaactgaccaggcaacacagcttccaaaaagaaccaaacatccaagcaaccaattctcatcacttcctaaggttgtgcca 27491497  T
Q  298 atcattgtttttgaaggcat-cttatgatctgcatttagtagttttggacccttcaataatgtcatggacactgctccagtaacacatatcattgtccca 396  Q
    || |||| ||||||||  || |||    ||||||||||| || |||||||||||||||| ||  ||| ||||||||||| | |||| ||| ||||| ||     
T  27491498 atgattgattttgaagttatgctt----tctgcatttagcagctttggacccttcaatagtgcaatgaacactgctccacttacacctataattgttcct 27491593  T
Q  397 actattttggctatagttctcaaactttgaatattcactttctccattctgtaatatatt 456  Q
    | |||||||||||||||||||||||||  ||||||||||| ||||||||||||| |||||    
T  27491594 attattttggctatagttctcaaacttctaatattcacttgctccattctgtaaaatatt 27491653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 744 - 804
Target Start/End: Original strand, 27493542 - 27493602
Alignment:
Q  744 gaaacaaacccaattagtgaggtcatgaaaatccaggaaaaacttgttaaatttaaggaat 804  Q
    ||||||||||||| |||||| || ||||| ||||| ||||||||  |||||||||||||||    
T  27493542 gaaacaaacccaactagtgaagtgatgaatatccaagaaaaactctttaaatttaaggaat 27493602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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