View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2911-Insertion-19 (Length: 858)
Name: NF2911-Insertion-19
Description: NF2911
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2911-Insertion-19 |
 | |
|
| [»] chr4 (2 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 472; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 472; E-Value: 0
Query Start/End: Original strand, 206 - 858
Target Start/End: Complemental strand, 39729786 - 39729135
Alignment:
| Q |
206 |
ttgaagggcttccattacaggacagtccctacctgaaatatgaagatctggaagattataagcgtcaaggatatggcacacaaggtcaccaacaaccaca |
305 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39729786 |
ttgaagggcttccattacaggacagtccctacctgaaatatgaagatttggaagattataagcgtcaaggatatggcacacaaggtcaccaacaaccaca |
39729687 |
T |
|
| Q |
306 |
gccaggtcgtggagctggtgccacagaggcaccaactctttctggtgctaatgtttcctctgaggctaaattcaatgctgctaatgctgttaatagcaaa |
405 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39729686 |
gccaggtcgtggagctggtgccacagaggcaccaactctttctggtgctaatgtttcctctgaggctaaattcaatgctgctaatgctgttaatagcaaa |
39729587 |
T |
|
| Q |
406 |
ggagttccataatttgctttatatatgataagaaattgtt-ttttagttttgctttccatttgtaaaattatcttttgagagtttttagattattgcact |
504 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39729586 |
ggagttccataatttgctttatatatgataagaaattgtttttttagttttgctttccatttgtaaaattatcttttgagagtttttagattattgcact |
39729487 |
T |
|
| Q |
505 |
ttctaaattttcattttgcttctttgttggatctgggatttctcaaatgaacaatatataaattagaggaataaatcgaatctgagtattacaagcaagt |
604 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
39729486 |
ttctaaattttcattttgcttctttgttggatctgggatttctgaaatgaac---------attagagtaataaatcgaatctgagtattacaagcaagt |
39729396 |
T |
|
| Q |
605 |
ttgttgaaataatgatctctaattttgtcaagttaaagaaatcaaaatatcttgtacc--nnnnnnnnnnnnnnnnnnncatcatgtttgattaacaaaa |
702 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
39729395 |
ttgttgaaataatgatctctaattttgtcaagttaaagaaatcaaaatatcttgtaccaaaaaaaaaaaaaaatcaaaacatcatgtttgattaacaaaa |
39729296 |
T |
|
| Q |
703 |
ctccaatttgaaatc------aatttaaatttcatttttagaaagnnnnnnnnntaaattattccatctattattagttctcgatttcacacaactagtt |
796 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||| | ||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
39729295 |
ctccaatttgaaatcaatttaaatttaaatttcatttttagaaagaaaaaaaaa-atattattccatccattattagttctcgatttcacacaactagtt |
39729197 |
T |
|
| Q |
797 |
tttcgatttactcacgtacgtacatatgagtatgtaagggttgattacgtattcattattgc |
858 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39729196 |
tttcgatttactcacgtacctacatatgagtatgtaagggttgattacgtattcattattgc |
39729135 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 8 - 125
Target Start/End: Complemental strand, 39729982 - 39729867
Alignment:
| Q |
8 |
ttatgaaatacttctaagtgcaacacgtgtattacactaggctaaaaatcataacaattaaaaaattgtatttttgtcatatataatgtaacaaatgttc |
107 |
Q |
| |
|
||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| |
|
|
| T |
39729982 |
ttatgaaatacttctaagt-caacacgtgtaatacactaggctaaaaatcataacaattaaaaa-ttgtatttttgtcatatataatgcaacaaatgttc |
39729885 |
T |
|
| Q |
108 |
aagagaggtgattacatt |
125 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
39729884 |
aagagaggtgattacatt |
39729867 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 86; Significance: 1e-40; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 206 - 387
Target Start/End: Complemental strand, 35175805 - 35175624
Alignment:
| Q |
206 |
ttgaagggcttccattacaggacagtccctacctgaaatatgaagatctggaagattataagcgtcaaggatatggcacacaaggtcaccaacaaccaca |
305 |
Q |
| |
|
||||||| |||||||| |||| ||||||||| |||||| ||||| |||||||||||||| ||||||| ||||| || |||||||| ||||||||| | |
|
|
| T |
35175805 |
ttgaaggacttccatttgaggatagtccctacttgaaatgcaaagatttggaagattataagtgtcaaggttatggtactcaaggtcatcaacaaccaaa |
35175706 |
T |
|
| Q |
306 |
gccaggtcgtggagctggtgccacagaggcaccaactctttctggtgctaatgtttcctctgaggctaaattcaatgctgct |
387 |
Q |
| |
|
||| ||||||||| |||||||||| |||||| | ||||||||||||||||||||||||||| | || |||||||||||||| |
|
|
| T |
35175705 |
gcctggtcgtggacctggtgccactgaggcagctactctttctggtgctaatgtttcctctcaagcccaattcaatgctgct |
35175624 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University