View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2911-Insertion-26 (Length: 611)

Name: NF2911-Insertion-26
Description: NF2911
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2911-Insertion-26
NF2911-Insertion-26
[»] chr7 (12 HSPs)
chr7 (8-611)||(12539893-12540496)
chr7 (354-599)||(12486080-12486326)
chr7 (354-599)||(12507512-12507758)
chr7 (8-234)||(12507169-12507395)
chr7 (8-234)||(12485737-12485963)
chr7 (8-234)||(12658055-12658281)
chr7 (8-234)||(12504845-12505071)
chr7 (8-88)||(12483415-12483495)
chr7 (8-91)||(11374229-11374312)
chr7 (24-85)||(12623771-12623833)
chr7 (15-85)||(20001134-20001204)
chr7 (12-107)||(12651604-12651699)
[»] chr1 (1 HSPs)
chr1 (8-109)||(15330456-15330557)
[»] chr5 (2 HSPs)
chr5 (8-96)||(3938675-3938763)
chr5 (406-446)||(3939049-3939089)
[»] chr8 (1 HSPs)
chr8 (8-91)||(35396120-35396203)
[»] chr3 (1 HSPs)
chr3 (21-77)||(53067996-53068052)


Alignment Details
Target: chr7 (Bit Score: 596; Significance: 0; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 596; E-Value: 0
Query Start/End: Original strand, 8 - 611
Target Start/End: Original strand, 12539893 - 12540496
Alignment:
Q  8 caaacaatctgctgccacaagcattctctccaaaagatggaatccattgtggcactcagttttcactctcgacttcgacgaccatggctttgcagatttc 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12539893 caaacaatctgctgccacaagcattctctccaaaagatggaatccattgtggcactcagttttcactctcgacttcgacgaccatggctttgcagatttc 12539992  T
Q  108 gctacattcagatatttcgtcttctgtgtcatgcttgcgcgtgaccccaccttgcctcttcgatctttccgcctcaaatgtggtgcctcccagggatgcg 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12539993 gctacattcagatatttcgtcttctgtgtcatgcttgcgcgtgaccccaccttgcctcttcgatctttccgcctcaaatgtggtgcctcccagggatgcg 12540092  T
Q  208 acccacaagatatcaatcgatttgttcgcgctgctgtgcaacgaggaactcagaatttcatcatggagacggatttggttaaaactgatagagaatttct 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12540093 acccacaagatatcaatcgatttgttcgcgctgctgtgcaacgaggaactcagaatttcatcatggagacggatttggttaaaactgatagagaatttct 12540192  T
Q  308 aaccaaattaggttctacagtttccacaattttcaattctagaaaccttgtggttcttaagttgaaaacattattagtgaccgttcttcctcaaatcaat 407  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  12540193 aaccgaattaggttctacagtttccacaattttcaattctagaaaccttgtggttcttaagttgaaaacattattagtgaccgatcttcctcaaatcaat 12540292  T
Q  408 tttcccttactcaaaactctccatttgaaaaaggtttacattctaagagattttaataagcttatcgaggggtgtcccattctagaggagttggaaataa 507  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12540293 tttcccttactcaaaactctccatttgaaaaaggtttacattctaagagattttaataagcttatcgaggggtgtcccattctagaggagttggaaataa 12540392  T
Q  508 caacttcttttctatttaggttttcgaaagatggtattggagagtttaaacactccaatttggtcagagttaacatttctaaatttggtccacaaaattt 607  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12540393 caacttcttttctatttaggttttcgaaagatggtattggagagtttaaacactccaatttggtcagagttaacatttctaaatttggtccacaaaattt 12540492  T
Q  608 tcca 611  Q
    ||||    
T  12540493 tcca 12540496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 354 - 599
Target Start/End: Original strand, 12486080 - 12486326
Alignment:
Q  354 cttgtggttcttaagttgaaaacattattagtgaccgttcttcctcaaatcaattttcccttactcaaaactctccatttg-aaaaaggtttacattcta 452  Q
    |||||||||||||||||||||||| || ||||||  ||||||||||||||| |||||||||| || ||||||||||||||| |||||||||   ||||||    
T  12486080 cttgtggttcttaagttgaaaacaataatagtgagggttcttcctcaaatcgattttcccttgcttaaaactctccatttggaaaaaggttgcgattcta 12486179  T
Q  453 agagattttaataagcttatcgaggggtgtcccattctagaggagttggaaataacaacttcttttctatttaggttttcgaaagatggtattggagagt 552  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||   | ||||||| |||| |||||||||||||||||||||||||||||    
T  12486180 agagattttaataagctaatcgaggggtgtcccattctagaggagttggaaat---accttctttactatgtaggttttcgaaagatggtattggagagt 12486276  T
Q  553 ttaaacact---ccaatttggtcagagttaacatttctaaatttggtcca 599  Q
    |||||||||   |||||||||| |||| ||||||||||||||||| ||||    
T  12486277 ttaaacacttgcccaatttggttagagctaacatttctaaatttgttcca 12486326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 354 - 599
Target Start/End: Original strand, 12507512 - 12507758
Alignment:
Q  354 cttgtggttcttaagttgaaaacattattagtgaccgttcttcctcaaatcaattttcccttactcaaaactctccatttg-aaaaaggtttacattcta 452  Q
    |||||||||||||||||||||||| || ||||||  ||||||||||||||| |||||||||| || ||||||||||||||| |||||||||   ||||||    
T  12507512 cttgtggttcttaagttgaaaacaataatagtgagggttcttcctcaaatcgattttcccttgcttaaaactctccatttggaaaaaggttgcgattcta 12507611  T
Q  453 agagattttaataagcttatcgaggggtgtcccattctagaggagttggaaataacaacttcttttctatttaggttttcgaaagatggtattggagagt 552  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||   | ||||||| |||| |||||||||||||||||||||||||||||    
T  12507612 agagattttaataagctaatcgaggggtgtcccattctagaggagttggaaat---accttctttactatgtaggttttcgaaagatggtattggagagt 12507708  T
Q  553 ttaaacact---ccaatttggtcagagttaacatttctaaatttggtcca 599  Q
    |||||||||   |||||||||| |||| ||||||||||||||||| ||||    
T  12507709 ttaaacacttgcccaatttggttagagctaacatttctaaatttgttcca 12507758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 8 - 234
Target Start/End: Original strand, 12507169 - 12507395
Alignment:
Q  8 caaacaatctgctgccacaagcattctctccaaaagatggaatccattgtggcactcagttttcactctcgacttcgacgaccatggctttgcagatttc 107  Q
    ||||||||||||||| ||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||| |||| |||    
T  12507169 caaacaatctgctgcaacaagcattctctctcaaagatggaatccattgtggcactcagttttcactctcgacttcgacgaccaaagctttacagacttc 12507268  T
Q  108 gctacattcagatatttcgtcttctgtgtcatgcttgcgcgtgaccccaccttgcctcttcgatctttccgcctcaaatgtggtgcctcccagggatgcg 207  Q
       || ||  || |||| |||| || |||||||||  | ||||||||||| |||||  | |||   |||| ||||||||||||| |||||| |||||| |    
T  12507269 cacacttttcgacattttgtctactctgtcatgctcacccgtgaccccacattgcccatccgaatgttccacctcaaatgtggtacctccccgggatgtg 12507368  T
Q  208 acccacaagatatcaatcgatttgttc 234  Q
    | ||||| |||||||||||||||||||    
T  12507369 atccacatgatatcaatcgatttgttc 12507395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 91; E-Value: 9e-44
Query Start/End: Original strand, 8 - 234
Target Start/End: Original strand, 12485737 - 12485963
Alignment:
Q  8 caaacaatctgctgccacaagcattctctccaaaagatggaatccattgtggcactcagttttcactctcgacttcgacgaccatggctttgcagatttc 107  Q
    ||||||||||||||| ||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||| |||| |||    
T  12485737 caaacaatctgctgcaacaagcattctctctcaaagatggaatccattgtggcactcagttttcactctcgacttcgacgaccaaagctttacagacttc 12485836  T
Q  108 gctacattcagatatttcgtcttctgtgtcatgcttgcgcgtgaccccaccttgcctcttcgatctttccgcctcaaatgtggtgcctcccagggatgcg 207  Q
       || ||  || |||| |||| || |||||||||  | ||||||||||| |||||  | |||   |||| ||||||||||||  |||||| |||||| |    
T  12485837 cacacttttcgacattttgtctactctgtcatgctcacccgtgaccccacattgcccatccgaatgttccacctcaaatgtggaacctccccgggatgtg 12485936  T
Q  208 acccacaagatatcaatcgatttgttc 234  Q
    | ||||| |||||||||||||||||||    
T  12485937 atccacatgatatcaatcgatttgttc 12485963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 8 - 234
Target Start/End: Original strand, 12658055 - 12658281
Alignment:
Q  8 caaacaatctgctgccacaagcattctctccaaaagatggaatccattgtggcactcagttttcactctcgacttcgacgaccatggctttgcagatttc 107  Q
    |||||||||| |||| ||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||| |||| |||    
T  12658055 caaacaatcttctgcaacaagcattctctcttaaagatggaatccattgtggcactcagttttcactctcgacttcgacgaccaaagctttacagacttc 12658154  T
Q  108 gctacattcagatatttcgtcttctgtgtcatgcttgcgcgtgaccccaccttgcctcttcgatctttccgcctcaaatgtggtgcctcccagggatgcg 207  Q
       || ||  || |||| |||| || |||||||||  | ||||||||||| |||||  | |||   |||| ||||||||||||  |||||| |||||| |    
T  12658155 cacacttttcgacattttgtctactctgtcatgctcacccgtgaccccacattgcccatccgaatgttccacctcaaatgtggaacctccccgggatgtg 12658254  T
Q  208 acccacaagatatcaatcgatttgttc 234  Q
    | ||||| |||||||||||||||||||    
T  12658255 atccacatgatatcaatcgatttgttc 12658281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 8 - 234
Target Start/End: Original strand, 12504845 - 12505071
Alignment:
Q  8 caaacaatctgctgccacaagcattctctccaaaagatggaatccattgtggcactcagttttcactctcgacttcgacgaccatggctttgcagatttc 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||  ||||| |||| |||    
T  12504845 caaacaatctgctgccacaagcattctctccaaaagatggaatccattgtggcactcagttttcactctcaacttcgacgatcaaagctttacagacttc 12504944  T
Q  108 gctacattcagatatttcgtcttctgtgtcatgcttgcgcgtgaccccaccttgcctcttcgatctttccgcctcaaatgtggtgcctcccagggatgcg 207  Q
        | ||  ||  |||||||| ||  ||||||||    ||||||||||| |||||  | ||||  |||| ||||||||||||| |||| | ||||||      
T  12504945 cacgcttttcgacttttcgtctactcagtcatgctcatccgtgaccccacattgcccatccgattgttccacctcaaatgtggtacctcaccgggatgtt 12505044  T
Q  208 acccacaagatatcaatcgatttgttc 234  Q
    | || || |||||||||||||||||||    
T  12505045 atcctcatgatatcaatcgatttgttc 12505071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 8 - 88
Target Start/End: Original strand, 12483415 - 12483495
Alignment:
Q  8 caaacaatctgctgccacaagcattctctccaaaagatggaatccattgtggcactcagttttcactctcgacttcgacga 88  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  12483415 caaacaatctgctgccacaagcattctctccaaaagatggaatccattgtggcactcagttttcactctcaacttcgacga 12483495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 8 - 91
Target Start/End: Original strand, 11374229 - 11374312
Alignment:
Q  8 caaacaatctgctgccacaagcattctctccaaaagatggaatccattgtggcactcagttttcactctcgacttcgacgacca 91  Q
    |||||||||||||||||| ||||| |||||||| |||||||| |||||||||| ||| ||  ||||||| |||||||| |||||    
T  11374229 caaacaatctgctgccactagcatcctctccaagagatggaacccattgtggctctccgtcctcactcttgacttcgatgacca 11374312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 24 - 85
Target Start/End: Complemental strand, 12623833 - 12623771
Alignment:
Q  24 acaagcattctctccaaaagatggaa-tccattgtggcactcagttttcactctcgacttcga 85  Q
    |||||||| ||||||||||||||||| ||| ||||||| ||||||| ||||||||||||||||    
T  12623833 acaagcatcctctccaaaagatggaaatccgttgtggctctcagttctcactctcgacttcga 12623771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 15 - 85
Target Start/End: Complemental strand, 20001204 - 20001134
Alignment:
Q  15 tctgctgccacaagcattctctccaaaagatggaatccattgtggcactcagttttcactctcgacttcga 85  Q
    ||||||||||||||||| ||||| || |||||||| ||| | |||| |||||||| |||||||||||||||    
T  20001204 tctgctgccacaagcatcctctctaagagatggaaaccaatatggctctcagtttccactctcgacttcga 20001134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 12 - 107
Target Start/End: Original strand, 12651604 - 12651699
Alignment:
Q  12 caatctgctgccacaagcattctctccaaaagatggaatccattgtggcactcagttttcactctcgacttcgacgaccatggctttgcagatttc 107  Q
    ||||||||||| |||| ||| ||||| ||||||||||| |||||||||| || | |  ||| |||| |||| ||||| |||| |||||||||||||    
T  12651604 caatctgctgcaacaaccatcctctctaaaagatggaaaccattgtggctcttactcctcaatctcaactttgacgatcatgactttgcagatttc 12651699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 66; Significance: 7e-29; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 8 - 109
Target Start/End: Complemental strand, 15330557 - 15330456
Alignment:
Q  8 caaacaatctgctgccacaagcattctctccaaaagatggaatccattgtggcactcagttttcactctcgacttcgacgaccatggctttgcagatttc 107  Q
    |||||||||||||||||||||||| ||||||||||||||| | ||||||||||| |||||| ||||||||||||||||||||||   |||| ||||||||    
T  15330557 caaacaatctgctgccacaagcatcctctccaaaagatggtacccattgtggcattcagttctcactctcgacttcgacgaccaaaactttacagatttc 15330458  T
Q  108 gc 109  Q
    ||    
T  15330457 gc 15330456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000004; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 8 - 96
Target Start/End: Original strand, 3938675 - 3938763
Alignment:
Q  8 caaacaatctgctgccacaagcattctctccaaaagatggaatccattgtggcactcagttttcactctcgacttcgacgaccatggct 96  Q
    ||||||||||||||| |||||||| |||||||| | |||||| | | | |||| ||||||| ||||||| || || |||||||| ||||    
T  3938675 caaacaatctgctgcaacaagcatcctctccaagaaatggaaccaactatggctctcagttctcactcttgattttgacgaccaaggct 3938763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 406 - 446
Target Start/End: Original strand, 3939049 - 3939089
Alignment:
Q  406 attttcccttactcaaaactctccatttgaaaaaggtttac 446  Q
    |||||||| |||||||||||||||||||| | |||||||||    
T  3939049 attttcccctactcaaaactctccatttggataaggtttac 3939089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 8 - 91
Target Start/End: Original strand, 35396120 - 35396203
Alignment:
Q  8 caaacaatctgctgccacaagcattctctccaaaagatggaatccattgtggcactcagttttcactctcgacttcgacgacca 91  Q
    ||||||||||||  |||| ||||| ||||| || |||||||| |||||||||| ||| ||  ||||||| |||||||| |||||    
T  35396120 caaacaatctgccaccactagcatcctctctaagagatggaacccattgtggctctccgtcctcactcttgacttcgatgacca 35396203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 21 - 77
Target Start/End: Original strand, 53067996 - 53068052
Alignment:
Q  21 gccacaagcattctctccaaaagatggaatccattgtggcactcagttttcactctc 77  Q
    ||||||||||| |||||||| || ||||| ||||| |||| |||||| |||||||||    
T  53067996 gccacaagcatcctctccaagaggtggaaaccattatggctctcagtcttcactctc 53068052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University