View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2911-Insertion-5 (Length: 1099)
Name: NF2911-Insertion-5
Description: NF2911
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2911-Insertion-5 |
 | |
|
| [»] scaffold0294 (1 HSPs) |
| | |
|
Alignment Details
Target: chr5 (Bit Score: 816; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 816; E-Value: 0
Query Start/End: Original strand, 7 - 1044
Target Start/End: Original strand, 615947 - 616991
Alignment:
| Q |
7 |
atcttttaaccaagtatacgtcatggtcccttaattaagtgaagcctatggttactcaagctttcaaattgtttgcctattaattaataaatttatactt |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
615947 |
atcttttaaccaagtatacgtcatggtcccttaattaagtgaagcctatggttactcaagctttcaaattgtttgcctattaattaataaatttatactt |
616046 |
T |
|
| Q |
107 |
tacaataaaaactttatagggaaggacaagagaatccaaatcatatggcttacacaagcaagtaaaaaatgactaaaatgttcccccaacccagcttttg |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
616047 |
tacaataaaaactttatagggaaggacaagagaatccaaatcatatggcttacacaagcaagtaaaaaatgactaaaatgttcccccaacccagcttttg |
616146 |
T |
|
| Q |
207 |
gaccatgtgtttatgtcacctttctaattattgtagnnnnnnnnnnnnnnnnn-aatcttgttcctccttttcaattaaacaaaataatgaaactatttt |
305 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
616147 |
gaccatgtgtttgtgtcacctttctaattattgtagttttttttttttttttttaatcctgttcctccttttcaattaaacaaaataatgaaactatttt |
616246 |
T |
|
| Q |
306 |
aggtaacagatgaaagcatgacaactaaatagtggtagtaaacaaattgctaattgcaagattaggtaactataaactttatgtttgttgagtccaaaag |
405 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
616247 |
aggtaacagatgaaagcatgacaactaaatagtggtagtaaacaaattgctaattgcaagattaggtaactataaactttatgtttgttgagtccaaaag |
616346 |
T |
|
| Q |
406 |
gtttaaaagctggttaatcgtaaattataaatatatagtatcatagttgagacggaaatggattctttcaggtgaatttctttctatttttctcaattgt |
505 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||| | ||||||||||||||||||||||||||||||||| |
|
|
| T |
616347 |
gtttaaaagctggttaattgtaaattataaatatatagtatcatagttgagacgggaatggattttctcaggtgaatttctttctatttttctcaattgt |
616446 |
T |
|
| Q |
506 |
tacatcttagccacacactcaatatcctctcttttttataatattatatctctttttctctctcatgtttaacagtgtagatgtgataattgagaaaaat |
605 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
616447 |
tacatcttagccacacactcaatatcctctcttttttataatattatatctctttttctctctcatgtttaatagtgtagatgtgataattgagaaaaat |
616546 |
T |
|
| Q |
606 |
agagaaaattttaattgagataatccattttcagccgagacagaaactatctaggatcggacaagtacaaatagctaccgattctaaataatctcattgg |
705 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
616547 |
agagaaaattttaattgagataatccattttcagccgagacagaaactatctaggaccaaacaagtacaaatagctaccgattctagataatctcattgg |
616646 |
T |
|
| Q |
706 |
gaataaacgactcactgattggtacgaatgttaattctattcttagtgtgtgctagtaattaac-accnnnnnnntgatatttatcaactaattaatgtg |
804 |
Q |
| |
|
||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||| | | ||||||||||||||||||||||| |
|
|
| T |
616647 |
gaataaatgactcactgattggtacgagtgttaattctattcttagtgtgtgctagtaattaacaaaaaaaaaaattatatttatcaactaattaatgtg |
616746 |
T |
|
| Q |
805 |
gttgggcttctaaaatattacattaacaaaaattgtgctaacaacacatattttagcatatatttttctaacacttttttattagtt-aaatttatataa |
903 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||| |
|
|
| T |
616747 |
gttgggcttctaaaatattacactaacaaaaattgtgctaacaacacatattttagcatatatttttc-aacacttttttattagttaaaatttatataa |
616845 |
T |
|
| Q |
904 |
ttccactaaattacatgttccatttaaatttgacggtactcatatgaactttaactagtaaaagagatgtcatagtttattggtgt--catcatatcata |
1001 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||| | |
|
|
| T |
616846 |
ttccactaaattacgtgttccatttaaatttgacagtactcatatgaactttaactaataaaagagatgtcatagtttattggtgttcaatcatatcaca |
616945 |
T |
|
| Q |
1002 |
ttaacctaaacaacc-aacaactgga--tgacatacactacattct |
1044 |
Q |
| |
|
||||||||||||||| ||||| |||| ||||||||||||||||| |
|
|
| T |
616946 |
ttaacctaaacaaccaaacaagtggaatggacatacactacattct |
616991 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 488 - 634
Target Start/End: Original strand, 15390242 - 15390389
Alignment:
| Q |
488 |
tctatttttctcaattgttacatcttagccacacactcaatatcctctcttttttataatattatatctcttttt--ctctctcatgtttaacagtgtag |
585 |
Q |
| |
|
|||||||||||||||| | | |||| | ||||||| ||||||| | | | ||||||||| ||||||| ||||| ||||||||| || || ||||| |
|
|
| T |
15390242 |
tctatttttctcaattataaaatctcaaccacacattcaatattattttctctttataataatatatctttttttttctctctcatatt-aatggtgtaa |
15390340 |
T |
|
| Q |
586 |
atgtgataattgagaaaaatagagaaaattttaattgagataatccatt |
634 |
Q |
| |
|
|||| | ||||||||||||| ||||||||| || |||||| |||||||| |
|
|
| T |
15390341 |
atgtaacaattgagaaaaatggagaaaattatacttgagagaatccatt |
15390389 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 537 - 577
Target Start/End: Complemental strand, 36441792 - 36441752
Alignment:
| Q |
537 |
ttttttataatattatatctctttttctctctcatgtttaa |
577 |
Q |
| |
|
||||||||||| |||||||||||||||||| |||||||||| |
|
|
| T |
36441792 |
ttttttataattttatatctctttttctctttcatgtttaa |
36441752 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 491 - 552
Target Start/End: Complemental strand, 8004933 - 8004872
Alignment:
| Q |
491 |
atttttctcaattgttacatcttagccacacactcaatatcctctcttttttataatattat |
552 |
Q |
| |
|
||||| ||| |||||||||||| | |||||||||||||||| | | || ||||||||||||| |
|
|
| T |
8004933 |
attttactcgattgttacatctcaaccacacactcaatatcttattttctttataatattat |
8004872 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 69; Significance: 2e-30; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 491 - 635
Target Start/End: Complemental strand, 35012184 - 35012040
Alignment:
| Q |
491 |
atttttctcaattgttacatcttagccacacactcaatatcctctcttttttataatattatatctctttttctctctcatgtttaacagtgtagatgtg |
590 |
Q |
| |
|
|||||||||||| ||| || || | |||||||||||||||||||| | ||||||||||||||||| ||| |||||||||| ||||| |||||||||| |
|
|
| T |
35012184 |
atttttctcaatcgtttcagctcaaccacacactcaatatcctctaatctttataatattatatctttttctctctctcatatttaatggtgtagatgta |
35012085 |
T |
|
| Q |
591 |
ataattgagaaaaatagagaaaattttaattgagataatccattt |
635 |
Q |
| |
|
| ||||||||||||||||||||||| || | |||| ||||||||| |
|
|
| T |
35012084 |
acaattgagaaaaatagagaaaattctactcgagagaatccattt |
35012040 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 477 - 616
Target Start/End: Original strand, 34051057 - 34051195
Alignment:
| Q |
477 |
gtgaatttctttctatttttctcaattgttacatcttagccacacactcaatatcctctcttttttataatattatatctctttttctctctcatgttta |
576 |
Q |
| |
|
||||| |||| ||||||||||| ||||||| ||||| | || ||| | ||||| ||| || ||||||||||||||| ||| ||| ||||||| ||||| |
|
|
| T |
34051057 |
gtgaaattctctctatttttcttaattgtttcatctcaaccttacattaaatattatcttttctttataatattatatatctatttatctctcaagttta |
34051156 |
T |
|
| Q |
577 |
acagtgtagatgtgataattgagaaaaatagagaaaattt |
616 |
Q |
| |
|
|||| ||| |||| | |||| |||||||| |||||||||| |
|
|
| T |
34051157 |
acagcgta-atgtaacaattaagaaaaatggagaaaattt |
34051195 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 562 - 630
Target Start/End: Complemental strand, 31475429 - 31475361
Alignment:
| Q |
562 |
tctctctcatgtttaacagtgtagatgtgataattgagaaaaatagagaaaattttaattgagataatc |
630 |
Q |
| |
|
|||||||||||||||| ||||||| | | |||||||||||||||||||||||| | |||||| |||| |
|
|
| T |
31475429 |
tctctctcatgtttaatgatgtagatataacaattgagaaaaatagagaaaatttcacttgagagaatc |
31475361 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 63; Significance: 8e-27; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 63; E-Value: 8e-27
Query Start/End: Original strand, 493 - 615
Target Start/End: Original strand, 46639848 - 46639970
Alignment:
| Q |
493 |
ttttctcaattgttacatcttagccacacactcaatatcctctcttttttataatattatatctctttttctctctcatgtttaacagtgtagatgtgat |
592 |
Q |
| |
|
|||||||||||| ||||||| | |||| ||||||||||||||| || ||||||||||||||||| |||||||||| || ||||| |||||||||| | |
|
|
| T |
46639848 |
ttttctcaattgctacatctcaaccacgcactcaatatcctcttttctttataatattatatctacttttctctctgatatttaatggtgtagatgtaac |
46639947 |
T |
|
| Q |
593 |
aattgagaaaaatagagaaaatt |
615 |
Q |
| |
|
||||||||||||| ||||||||| |
|
|
| T |
46639948 |
aattgagaaaaatggagaaaatt |
46639970 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 60; Significance: 5e-25; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 60; E-Value: 5e-25
Query Start/End: Original strand, 492 - 615
Target Start/End: Complemental strand, 18373165 - 18373042
Alignment:
| Q |
492 |
tttttctcaattgttacatcttagccacacactcaatatcctctcttttttataatattatatctctttttctctctcatgtttaacagtgtagatgtga |
591 |
Q |
| |
|
||||||||||||||||||||| | |||| |||||| |||||||| | ||||||||||||||||| |||||||||||||| ||||| ||||||||| | |
|
|
| T |
18373165 |
tttttctcaattgttacatctcaaccacgcactcattatcctctttactttataatattatatctatttttctctctcatatttaatgatgtagatgtaa |
18373066 |
T |
|
| Q |
592 |
taattgagaaaaatagagaaaatt |
615 |
Q |
| |
|
||||||||||||| || |||||| |
|
|
| T |
18373065 |
caattgagaaaaatggaaaaaatt |
18373042 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 52; Significance: 3e-20; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 551 - 634
Target Start/End: Original strand, 30364310 - 30364393
Alignment:
| Q |
551 |
atatctctttttctctctcatgtttaacagtgtagatgtgataattgagaaaaatagagaaaattttaattgagataatccatt |
634 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||| | ||||||||||||| |||||||||| | |||||| |||||||| |
|
|
| T |
30364310 |
atatctctttttctctctcatgtttaatggtgtagatgtaacaattgagaaaaatggagaaaatttcacttgagagaatccatt |
30364393 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 491 - 616
Target Start/End: Original strand, 5179262 - 5179385
Alignment:
| Q |
491 |
atttttctcaattgttacatcttagccacacactcaatatcctctcttttttataatattatatctctttttctctctcatgtttaacagtgtagatgtg |
590 |
Q |
| |
|
|||||||||||||||||||||| | |||| || | ||||| |||| || |||| ||| ||||||||||||| |||||||||||||| ||||||||| |
|
|
| T |
5179262 |
atttttctcaattgttacatctcaaccacgcatttaatattctcttttctttacaattttatatctctttt--tctctcatgtttaatgatgtagatgta |
5179359 |
T |
|
| Q |
591 |
ataattgagaaaaatagagaaaattt |
616 |
Q |
| |
|
| ||||||||||||| || ||||||| |
|
|
| T |
5179360 |
acaattgagaaaaatggaaaaaattt |
5179385 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 540 - 615
Target Start/End: Original strand, 6734396 - 6734471
Alignment:
| Q |
540 |
tttataatattatatctctttttctctctcatgtttaacagtgtagatgtgataattgagaaaaatagagaaaatt |
615 |
Q |
| |
|
|||| ||| ||||||||||||| ||||| |||||||| |||||||||| | |||||| |||||| ||||||||| |
|
|
| T |
6734396 |
tttacaattttatatctcttttcatctcttatgtttaatggtgtagatgtaagaattgaaaaaaatggagaaaatt |
6734471 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 491 - 577
Target Start/End: Complemental strand, 8479690 - 8479604
Alignment:
| Q |
491 |
atttttctcaattgttacatcttagccacacactcaatatcctctcttttttataatattatatctctttttctctctcatgtttaa |
577 |
Q |
| |
|
|||||||||||||| ||||||| | |||||||| ||||| | | || |||||||| ||| |||| ||||| |||||||||||||| |
|
|
| T |
8479690 |
atttttctcaattggtacatctcaaccacacacataatattgtattttatttataattttagatctatttttttctctcatgtttaa |
8479604 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0294 (Bit Score: 38; Significance: 0.000000000007; HSPs: 1)
Name: scaffold0294
Description:
Target: scaffold0294; HSP #1
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 466 - 567
Target Start/End: Complemental strand, 2818 - 2717
Alignment:
| Q |
466 |
gattctttcaggtgaatttctttctatttttctcaattgttacatcttagccacacactcaatatcctctcttttttataatattatatctctttttctc |
565 |
Q |
| |
|
|||||| ||| ||| |||||| || |||||||||||||||||||| | | ||||||| | ||||| |||| || |||| ||| |||||||||||||| || |
|
|
| T |
2818 |
gattctctcaagtgtatttctctcaatttttctcaattgttacatttcaaccacacatttaatattctcttttctttacaattttatatctctttttgtc |
2719 |
T |
|
| Q |
566 |
tc |
567 |
Q |
| |
|
|| |
|
|
| T |
2718 |
tc |
2717 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 490 - 589
Target Start/End: Original strand, 3820770 - 3820873
Alignment:
| Q |
490 |
tatttttctcaattgttacatcttagccacacactcaatatcctc----tcttttttataatattatatctctttttctctctcatgtttaacagtgtag |
585 |
Q |
| |
|
||||||||||||||||||||||||| || |||||| ||||| ||| ||||| |||||| | ||||| | ||||||||||||| ||||| |||||| |
|
|
| T |
3820770 |
tatttttctcaattgttacatcttaacctcacacttaatatactctttttctttagtataatttaatatcacattttctctctcatatttaatggtgtag |
3820869 |
T |
|
| Q |
586 |
atgt |
589 |
Q |
| |
|
|||| |
|
|
| T |
3820870 |
atgt |
3820873 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 493 - 556
Target Start/End: Original strand, 39129004 - 39129067
Alignment:
| Q |
493 |
ttttctcaattgttacatcttagccacacactcaatatcctctcttttttataatattatatct |
556 |
Q |
| |
|
|||||||||||||||||||||| ||||| ||||||| || ||| || |||| ||| |||||||| |
|
|
| T |
39129004 |
ttttctcaattgttacatcttaaccacaaactcaatgtcatcttttctttacaattttatatct |
39129067 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University