View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2911-Insertion-6 (Length: 1087)
Name: NF2911-Insertion-6
Description: NF2911
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2911-Insertion-6 |
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Alignment Details
Target: chr7 (Bit Score: 109; Significance: 3e-54; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 109; E-Value: 3e-54
Query Start/End: Original strand, 247 - 386
Target Start/End: Complemental strand, 27395809 - 27395667
Alignment:
| Q |
247 |
ttagtttaatattaagattttgcttggtataagatattaaaattaaaaaataatagtacttaattacaactgatcagacttttaaaccttgatttcagaa |
346 |
Q |
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| T |
27395809 |
ttagtttaatattaagattttgcttggtataagatattaaaattaaaatataatagtatttaattacaactggtcagacttttaaaccttgatttcagaa |
27395710 |
T |
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| Q |
347 |
tat---accatgaagtggagggaataactctccaactcatggt |
386 |
Q |
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| T |
27395709 |
tataccaccatgaaatggagggaataactctccaactcttggt |
27395667 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 102; E-Value: 4e-50
Query Start/End: Original strand, 82 - 187
Target Start/End: Complemental strand, 27395970 - 27395865
Alignment:
| Q |
82 |
atgcttaatctttatattaagtatatgctaatttttactattgggtacttaaagataaactcagatttatgttactgggttgctagaagggaaaaaatat |
181 |
Q |
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| T |
27395970 |
atgcttaatctttatattaaatatatgctaatttttactattgggtacttaaagataaactcagatttatgttactgggttgctagaagggaaaaaatat |
27395871 |
T |
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| Q |
182 |
tttaaa |
187 |
Q |
| |
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|||||| |
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| T |
27395870 |
tttaaa |
27395865 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 383 - 498
Target Start/End: Complemental strand, 27395617 - 27395505
Alignment:
| Q |
383 |
tggtgctgctgtgttttcaattgaggtaagttactctagttt-gacatcatgaaggagaatgaatacattggaagatcccagctctagagcaaaactatg |
481 |
Q |
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| T |
27395617 |
tggtgctgctgtgttttcaattaaggtaagctactctagttttgacatcatgaaggaggat----acattggaagatcccaggtctagagcaaaactatg |
27395522 |
T |
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| Q |
482 |
taaaacatcattctcaa |
498 |
Q |
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| T |
27395521 |
taaaacatcattctcaa |
27395505 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 520 - 560
Target Start/End: Complemental strand, 27394773 - 27394733
Alignment:
| Q |
520 |
ttcaagttcgctttgccttcgattccaaccttataatcact |
560 |
Q |
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| T |
27394773 |
ttcatgttcgctttgccttcgattccaaccttataatcact |
27394733 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 557 - 598
Target Start/End: Complemental strand, 27393647 - 27393606
Alignment:
| Q |
557 |
cactgaatatgaaacttggcatgtaaaaaagaaagaactgaa |
598 |
Q |
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| T |
27393647 |
cactgaatttgaaacttagtatgtaaaaaagaaagaactgaa |
27393606 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 496 - 525
Target Start/End: Complemental strand, 27395496 - 27395467
Alignment:
| Q |
496 |
caatatattgttagaaacttgctcttcaag |
525 |
Q |
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| T |
27395496 |
caatatattgttagaaacttgctcttcaag |
27395467 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 57; Significance: 3e-23; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 877 - 1007
Target Start/End: Complemental strand, 45072226 - 45072079
Alignment:
| Q |
877 |
gtatcaaattcgaatcatttgccaagcaagtcaaagagatt--agactagaggggagcttttg-------------aaatcagc-attgtttatcttttc |
960 |
Q |
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||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||| |||||||| ||||||||||||||| |
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| T |
45072226 |
gtatcaaattcgaatcatttgccaagcaagtcaaagagattaaaaactagaggggagcttttggaaattgctaagaaaatcagcaattgtttatcttttc |
45072127 |
T |
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| Q |
961 |
-agcatgtgtagtgtagaagctgtcaacattatgaattatgttttgat |
1007 |
Q |
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| T |
45072126 |
aagcatgtgtagtgtagcaactttcaacgttatgaattatgttttgat |
45072079 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 246 - 288
Target Start/End: Original strand, 109230 - 109272
Alignment:
| Q |
246 |
tttagtttaatattaagattttgcttggtataagatattaaaa |
288 |
Q |
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| T |
109230 |
tttagtttgatatttatattttgcttggtataagatattaaaa |
109272 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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