View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2911-Insertion-9 (Length: 1031)
Name: NF2911-Insertion-9
Description: NF2911
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2911-Insertion-9 |
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Alignment Details
Target: chr3 (Bit Score: 222; Significance: 1e-121; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 222; E-Value: 1e-121
Query Start/End: Original strand, 4 - 311
Target Start/End: Complemental strand, 42207393 - 42207068
Alignment:
| Q |
4 |
aacagaaggatctaaaatgcagtctcttttagaagttgaacagatgtcacacatgttagtttatgcatcaccaaaccaagggatacattttctctgccca |
103 |
Q |
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| T |
42207393 |
aacagaaggatctaaaatgcagtctcttttagaagttgaacagatgtcacacatgttagtttatccatcaccaaaccaagggatacatattctctgccca |
42207294 |
T |
|
| Q |
104 |
gaatc-----aacttcatgtgaagtttcaaaattggtgtctactatccaacaagaaagagtggagtaattagaagagttccccaagctttcatatgctac |
198 |
Q |
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| T |
42207293 |
gaatcgaatcaacttcatgtgaagtttcaacattggtgtctactatccaacaagaaagagtggagtaattagaagagttccccaagctttcatatgctac |
42207194 |
T |
|
| Q |
199 |
atgtaattgatcaattttcaaacaagcactcaaagcatactataacagaaag----------------gctgtaccactaccacatacatgatgatcagt |
282 |
Q |
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| T |
42207193 |
atgtaattgatcaattttcaaacaagcactcaaagcataatataacagaaaggctgcataacctaaaggctgtacaactaccacatac---atgatcagt |
42207097 |
T |
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| Q |
283 |
tcatcaattgaaatttttgtacccactta |
311 |
Q |
| |
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| T |
42207096 |
tcatcaattgaaatttttgtacccactta |
42207068 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 130; E-Value: 8e-67
Query Start/End: Original strand, 608 - 787
Target Start/End: Complemental strand, 42206965 - 42206780
Alignment:
| Q |
608 |
atgactaaagagttcataatgcatgcagtttactataacgtcattgaggaggcatccatccctaatcccttac-aaatgtttatgaaacgatgtatgtgc |
706 |
Q |
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| T |
42206965 |
atgactaaagagttcataatgcatgcagtttactataacgtcattgaggaggcatccatccctaatcccttacaaaatatttatgaaacgatgtatgtgc |
42206866 |
T |
|
| Q |
707 |
atcaattcctaccctcaaaattga-----tgttacaaaattcagatgaatgtcactgcaagagtttttgatgttacaaaattgaag |
787 |
Q |
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| T |
42206865 |
atcaattcctaccctcaaaattgaacgagggacccaacattcagatgaatgtcactgcaagattttttgatgttacaaaattgaag |
42206780 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 112; E-Value: 4e-56
Query Start/End: Original strand, 875 - 1014
Target Start/End: Complemental strand, 42206768 - 42206632
Alignment:
| Q |
875 |
attgaatgttgttgaataatcaagaaagaagaataggtatcctagcattgtatcaatgtttcgaaacaaaattaccgtagcaaacaaaaaacatttattg |
974 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||| || |
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| T |
42206768 |
attgaatgttgttgaataatcaagaaagaagaataggtatcctagca-tgtatcaatgtttcgaaacaaaattaccgtagcaaac-aaaaacattta-tg |
42206672 |
T |
|
| Q |
975 |
tttcgaaacattagcgtcaactgagcacggttcttctctc |
1014 |
Q |
| |
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| T |
42206671 |
tttcgaaacattagcgtcaactgagcacggttcttttctc |
42206632 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 854 - 899
Target Start/End: Complemental strand, 42207787 - 42207742
Alignment:
| Q |
854 |
tttctttctttcaagcagaagattgaatgttgttgaataatcaaga |
899 |
Q |
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| T |
42207787 |
tttctttctttcaagcagaagattgaatgttcttgaataatcaaga |
42207742 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 142 - 201
Target Start/End: Complemental strand, 42208795 - 42208736
Alignment:
| Q |
142 |
tatccaacaagaaagagtggagtaattagaagagttccccaagctttcatatgctacatg |
201 |
Q |
| |
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|||||||||||||| || |||| ||||||||||||| ||||||||| ||||||||||||| |
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|
| T |
42208795 |
tatccaacaagaaaaagaggaggaattagaagagtttcccaagcttccatatgctacatg |
42208736 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 47 - 88
Target Start/End: Complemental strand, 42208886 - 42208845
Alignment:
| Q |
47 |
atgtcacacatgttagtttatgcatcaccaaaccaagggata |
88 |
Q |
| |
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|
| T |
42208886 |
atgtcacacatgctagtttatccatcaccaaaccaagggata |
42208845 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 782 - 838
Target Start/End: Complemental strand, 42207989 - 42207933
Alignment:
| Q |
782 |
ttgaagcagaagattgaatgttcctgaataattaagaactagaaaacaggtaaccca |
838 |
Q |
| |
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||||||||||||||||||||||| ||||||| |||||| ||||| |||||||||| |
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| T |
42207989 |
ttgaagcagaagattgaatgttcttgaataaccaagaacacgaaaataggtaaccca |
42207933 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 51; Significance: 1e-19; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 131 - 201
Target Start/End: Complemental strand, 6918228 - 6918158
Alignment:
| Q |
131 |
ttggtgtctactatccaacaagaaagagtggagtaattagaagagttccccaagctttcatatgctacatg |
201 |
Q |
| |
|
|||||||||| ||| |||||||||||||||||| ||||||||| ||||||||||||| ||||||||||||| |
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| T |
6918228 |
ttggtgtctagtatacaacaagaaagagtggaggaattagaagggttccccaagcttccatatgctacatg |
6918158 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 44 - 82
Target Start/End: Complemental strand, 6918331 - 6918293
Alignment:
| Q |
44 |
cagatgtcacacatgttagtttatgcatcaccaaaccaa |
82 |
Q |
| |
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||||||||||||||| |||||||| |||||||||||||| |
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| T |
6918331 |
cagatgtcacacatgctagtttatccatcaccaaaccaa |
6918293 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 203 - 248
Target Start/End: Complemental strand, 28965389 - 28965344
Alignment:
| Q |
203 |
aattgatcaattttcaaacaagcactcaaagcatactataacagaa |
248 |
Q |
| |
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|||||||| | ||||||||||||| |||||||||| |||||||||| |
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| T |
28965389 |
aattgatcgaatttcaaacaagcattcaaagcatattataacagaa |
28965344 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 203 - 248
Target Start/End: Original strand, 35088858 - 35088903
Alignment:
| Q |
203 |
aattgatcaattttcaaacaagcactcaaagcatactataacagaa |
248 |
Q |
| |
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|||||||| | ||||||||||||| |||||||||| |||||||||| |
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| T |
35088858 |
aattgatcgaatttcaaacaagcattcaaagcatattataacagaa |
35088903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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