View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2912_high_1 (Length: 751)
Name: NF2912_high_1
Description: NF2912
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2912_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 449; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 449; E-Value: 0
Query Start/End: Original strand, 14 - 605
Target Start/End: Original strand, 37027450 - 37028026
Alignment:
| Q |
14 |
agcataggtacaaactacaagattacaagaacaaaacaagaaaatgtagcattttaattagaaacatgactacaattgttctactctataattatgctca |
113 |
Q |
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| T |
37027450 |
agcataggtacaaactacaagattacaagatcaaaacaagaaaatgtagcattttaattagaaacatgactacaattgttctactctataattatgctca |
37027549 |
T |
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| Q |
114 |
ttgtttgatgtgttatgacaatatgacattgtcgttccacaacgcttcttgtgcttgttgaagttgttgtagtatctgctccagaattggttctgtttca |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||| |||||||||| |
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| T |
37027550 |
ttgtttgatgtgttatgacaatatgacattgtcgttccacaatgcttcttgtgcttgttgaagttgttgtagtatctgctccacaattgattctgtttca |
37027649 |
T |
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| Q |
214 |
acatttggaggtggagaaggaggagatggaatgttgtccctatagagaagagggtgaaaatttccatcccatgagttatnnnnnnnnnnnnnnnnnnnnn |
313 |
Q |
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| T |
37027650 |
atatttggaggtggagaaggaggagatggaatgttgtccctatagagaagagggtgaaaatttccatcccatgagttat------tagtagtagtagtag |
37027743 |
T |
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| Q |
314 |
ngtaaaagatgcttcttcttttccttatttttgataaattagcactttctttaattcgaatgaaatgcttttgagcattgctagcaacttgagttgcagt |
413 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||| |
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| T |
37027744 |
tgtaaaagatgcttcttcttttccttatttttgataacttagcactttctttaattcgaatgaaatgcttttgagcatggctagcaacttgagttgtagt |
37027843 |
T |
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| Q |
414 |
ttttgtaccaacatgttgtgcaatctttatccattttcccttgccactgttgccatacttctcaaacccctccagaaataacctataaataacaagtcac |
513 |
Q |
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| T |
37027844 |
ttttgtaccaacatgttgtgcaatctttatccattttccc---------ttgccatacttctcaaacccctccagaaataacctataaataacaagttac |
37027934 |
T |
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| Q |
514 |
aatttagtcattaaaacaaatataaaaagtaatgttctccaaatctttttatggatttctcatcatgcatagactcattcacgtacatgaac |
605 |
Q |
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| T |
37027935 |
aatttagtcattaaaacaaatataaaaagtaatgttctccaaatctttttatggatttcttatcatgcatagactcattcacgtacatgaac |
37028026 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 639 - 735
Target Start/End: Original strand, 37028060 - 37028153
Alignment:
| Q |
639 |
cacgtgtaaagttaattactttctgaaataattataataagtatatacctgtgttgttcttcatcccaatgataatgccctttcttgatcttattca |
735 |
Q |
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| T |
37028060 |
cacgtgtaaagttaattactttctgaaataattataa---gtatatacctgtgttgttcttcatcccaatgatactgccctttattgatcttattca |
37028153 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 231 - 268
Target Start/End: Complemental strand, 23193908 - 23193871
Alignment:
| Q |
231 |
aggaggagatggaatgttgtccctatagagaagagggt |
268 |
Q |
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| T |
23193908 |
aggaggagatggaatgatgtccctataaagaagagggt |
23193871 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 49; Significance: 1e-18; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 375 - 455
Target Start/End: Complemental strand, 32248373 - 32248293
Alignment:
| Q |
375 |
gaaatgcttttgagcattgctagcaacttgagttgcagtttttgtaccaacatgttgtgcaatctttatccattttccctt |
455 |
Q |
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| T |
32248373 |
gaaatgcttttgagcatggctagcaacttgacttgcagttcttgtacgaacatgttgtgaaatcattttccaatttccctt |
32248293 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 375 - 455
Target Start/End: Complemental strand, 32236179 - 32236099
Alignment:
| Q |
375 |
gaaatgcttttgagcattgctagcaacttgagttgcagtttttgtaccaacatgttgtgcaatctttatccattttccctt |
455 |
Q |
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| T |
32236179 |
gaaatgcttttgagcatggctagcaacttgacttgcagttcttgtacgaacatgttgtgaaatcagtttccactttccctt |
32236099 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 231 - 286
Target Start/End: Complemental strand, 32254748 - 32254693
Alignment:
| Q |
231 |
aggaggagatggaatgttgtccctatagagaagagggtgaaaatttccatcccatg |
286 |
Q |
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| T |
32254748 |
aggaggaaatggaatgttgtccttatagagaagagggtggaaatttccatcccatg |
32254693 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 246 - 288
Target Start/End: Complemental strand, 32236344 - 32236302
Alignment:
| Q |
246 |
gttgtccctatagagaagagggtgaaaatttccatcccatgag |
288 |
Q |
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| T |
32236344 |
gttgtccttatagagaagagggtggaaatttccatcccatgag |
32236302 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 246 - 288
Target Start/End: Complemental strand, 32248538 - 32248496
Alignment:
| Q |
246 |
gttgtccctatagagaagagggtgaaaatttccatcccatgag |
288 |
Q |
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| T |
32248538 |
gttgtccttatagagaagagggtggaaatttccatcccatgag |
32248496 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 226 - 268
Target Start/End: Complemental strand, 32254690 - 32254648
Alignment:
| Q |
226 |
ggagaaggaggagatggaatgttgtccctatagagaagagggt |
268 |
Q |
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| T |
32254690 |
ggaggaggaggggatggaatgttgtccttatagagaagagggt |
32254648 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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