View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2912_high_12 (Length: 272)
Name: NF2912_high_12
Description: NF2912
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2912_high_12 |
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| [»] chr7 (2 HSPs) |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 258; Significance: 1e-144; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 11 - 272
Target Start/End: Original strand, 6472998 - 6473259
Alignment:
| Q |
11 |
cacagagaaaccaacaaagcaccataggaagggaaataggttctgaatgtgcaggtctgcactattaattttcaatgagacaatacaatagaataacttt |
110 |
Q |
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| T |
6472998 |
cacagagaaaccaacaaagcaccataggaagggaaataggttctgaatgtgcaggtctgcactattaattttcaatgagacaatacaatagaataacttt |
6473097 |
T |
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| Q |
111 |
ctaggaattcaaatacaaacggtatcactaccataaactataaacagtagcatagcataagcaattttctaaactctcaactaactggttttttgcagta |
210 |
Q |
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| T |
6473098 |
ctaggaattcaaatacaaatggtatcactaccataaactataaacagtagcatagcataagcaattttctaaactctcaactaactggttttttgcagta |
6473197 |
T |
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| Q |
211 |
ctgcttgtttgattctcagtttcatactacatttttacttgaaacatattgtgtaacccttt |
272 |
Q |
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| T |
6473198 |
ctgcttgtttgattctcagtttcatactacatttttacttgaaacatattgtgtaacccttt |
6473259 |
T |
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Target: chr7; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 193 - 265
Target Start/End: Original strand, 10561674 - 10561746
Alignment:
| Q |
193 |
aactggttttttgcagtactgcttgtttgattctcagtttcatactacatttttacttgaaacatattgtgta |
265 |
Q |
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| T |
10561674 |
aactggttttttgcagtactgcttgtttgattctcagtttcatactacatttttacttgaaacatattgtgta |
10561746 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 74; Significance: 5e-34; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 192 - 265
Target Start/End: Original strand, 14499116 - 14499189
Alignment:
| Q |
192 |
taactggttttttgcagtactgcttgtttgattctcagtttcatactacatttttacttgaaacatattgtgta |
265 |
Q |
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| T |
14499116 |
taactggttttttgcagtactgcttgtttgattctcagtttcatactacatttttacttgaaacatattgtgta |
14499189 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 49 - 127
Target Start/End: Original strand, 18359584 - 18359661
Alignment:
| Q |
49 |
ggttctgaatgtgcaggtctgcactattaattttcaatgagacaatacaatagaataactttctaggaattcaaataca |
127 |
Q |
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| T |
18359584 |
ggttctgaatgcgcatctttgcactattaattt-caatgaaacagtacaatagtataactttcttggaattcaaataca |
18359661 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 201 - 272
Target Start/End: Original strand, 9133375 - 9133452
Alignment:
| Q |
201 |
ttttgcagtactgcttgtttgattctcagtttcatacta------catttttacttgaaacatattgtgtaacccttt |
272 |
Q |
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| T |
9133375 |
ttttgcagtactggttgtttgattctaagtttcataccagtacctcatttttacttgtaacatgttgtgtaacccttt |
9133452 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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