View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2912_high_13 (Length: 271)
Name: NF2912_high_13
Description: NF2912
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2912_high_13 |
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| [»] chr7 (3 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 142; Significance: 1e-74; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 118 - 271
Target Start/End: Complemental strand, 6473500 - 6473347
Alignment:
| Q |
118 |
gggaggttagtgatcaaattaaaactacaggggaggtttgtgacatttgattaaacctcaggggaggtcaatgcaatttcccctaaagtttattataagt |
217 |
Q |
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| T |
6473500 |
gggaggttagtgatcaaattaaaactagaggggaggtttgtgacatttgattaaacctcaggggaggtcaatgcaatttcccctaaagtttattataagt |
6473401 |
T |
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| Q |
218 |
tttaggtctttccaattcaaatatcatttgaagttgtaatgtgcattcacaatt |
271 |
Q |
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| T |
6473400 |
tgtaggtctttccaattcaaataccatttgaagttgtaatgtgcattcacaatt |
6473347 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 18 - 120
Target Start/End: Complemental strand, 6473632 - 6473530
Alignment:
| Q |
18 |
taaggagaatgcaacagaaacatgaaatggggatgtagggccttctttgtaggaggtgatttatgtttggacgacggtaaccaaccgcgttaatcaagag |
117 |
Q |
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| T |
6473632 |
taaggagaatgcaacagaaacatgaaatggggatgtagggccttctttgtaggaggtgatttctgtttggacgacggtaaccaacggcgttaatcaagag |
6473533 |
T |
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| Q |
118 |
ggg |
120 |
Q |
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| T |
6473532 |
ggg |
6473530 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 203 - 271
Target Start/End: Complemental strand, 10561912 - 10561844
Alignment:
| Q |
203 |
aagtttattataagttttaggtctttccaattcaaatatcatttgaagttgtaatgtgcattcacaatt |
271 |
Q |
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| T |
10561912 |
aagtttattataagttttaattctttccaattcaaataccatttgaagttgtaatgtgcattcacaatt |
10561844 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 52; Significance: 7e-21; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 118 - 201
Target Start/End: Complemental strand, 39885395 - 39885313
Alignment:
| Q |
118 |
gggaggttagtgatcaaattaaaactacaggggaggtttgtgacatttgattaaacctcaggggaggtcaatgcaatttcccct |
201 |
Q |
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| T |
39885395 |
gggaggttagtgatcaaattaaaaatagaggggagttttgtgacatttgactaaacttca-gggaggtcaatgtaatttcccct |
39885313 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 18 - 86
Target Start/End: Complemental strand, 39885530 - 39885462
Alignment:
| Q |
18 |
taaggagaatgcaacagaaacatgaaatggggatgtagggccttctttgtaggaggtgatttatgtttg |
86 |
Q |
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| T |
39885530 |
taaggagaatgcaacataaacatgaaatggggatgtagggcattctttttaggcggtgatttttgtttg |
39885462 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 138 - 203
Target Start/End: Original strand, 39886000 - 39886065
Alignment:
| Q |
138 |
aaaactacaggggaggtttgtgacatttgattaaacctcaggggaggtcaatgcaatttcccctaa |
203 |
Q |
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| T |
39886000 |
aaaactagaggggaggtgtgtgacatttgattaaagcttaggggaggtcaatataatttcccctaa |
39886065 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 139 - 195
Target Start/End: Complemental strand, 2864041 - 2863985
Alignment:
| Q |
139 |
aaactacaggggaggtttgtgacatttgattaaacctcaggggaggtcaatgcaatt |
195 |
Q |
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| T |
2864041 |
aaactagaggggagatatgtgacatttaacaaaacctcaggggaggtcaatgtaatt |
2863985 |
T |
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