View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2912_high_16 (Length: 249)
Name: NF2912_high_16
Description: NF2912
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2912_high_16 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 14134261 - 14134029
Alignment:
| Q |
1 |
aaatagagtgcatttttcttacccgtgacttagnnnnnnngaaaacttgagtagcatatgtttataatcttagccttaaatcattttatatgtgccattt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14134261 |
aaatagagtgcatttttcttacccgtgacttagaaaaaaagaaaacttgagtagcatatatttataatcttagccttaaatcattttatatgtgccattt |
14134162 |
T |
|
| Q |
101 |
tatcaactctatcacccaattcactctctgaaaaaatttcttcttccttaaatttcaaaccctttgagactcttttcaagatgacaacaaaggaaatgaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14134161 |
tatcaactctatcacccaattcactctctgaaaaaatttcttcttccttaaatttcaaaccctttgagactcttttcaagatgacaacaaaggaaatgaa |
14134062 |
T |
|
| Q |
201 |
agttcaaatttcatcaagaaatgatgtgattca |
233 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
14134061 |
agttcaaatttcatcaagaaatgatgtgattca |
14134029 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University