View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2912_high_18 (Length: 247)
Name: NF2912_high_18
Description: NF2912
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2912_high_18 |
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Alignment Details
Target: chr1 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 3 - 240
Target Start/End: Complemental strand, 15496334 - 15496097
Alignment:
| Q |
3 |
aggcatggacttacgaaattagaggtctaagggaaaacatgttaggtggagcaatgtgtggtagaggatcatgttatgtgtaggctaccttttgttttgg |
102 |
Q |
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| T |
15496334 |
aggcatggacttacgaaattagaggtctaagggaaaacatgttaggtggagcaatgtgtggcagagggtcttgttatgtgtaggttaccttttgttttgg |
15496235 |
T |
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| Q |
103 |
cacttttggttgctagcactcttttagtacctatgatgttgtgttatggggaaggtagtgtcttgttacttataagtgttaagattaatgtttattttat |
202 |
Q |
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| T |
15496234 |
cacttttggttgctagcactcttttagtacctatgatgttgtattatggggaaggtagtgtcttgttacttataagtgttaagattaatttttattttat |
15496135 |
T |
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| Q |
203 |
ttttatgtggcggtgagttttgtttgtcgtgatgatgt |
240 |
Q |
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| T |
15496134 |
ttttatgtggcggtgagttttgtttgtggtgatgatgt |
15496097 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 3 - 240
Target Start/End: Complemental strand, 40681332 - 40681095
Alignment:
| Q |
3 |
aggcatggacttacgaaattagaggtctaagggaaaacatgttaggtggagcaatgtgtggtagaggatcatgttatgtgtaggctaccttttgttttgg |
102 |
Q |
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| T |
40681332 |
aggcatggacttacgaaattagaggtctaagggaaaacatgttaggtggagcaatgtgtggcagaggatcatgttatgtgtaggttaccttttgttttgg |
40681233 |
T |
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| Q |
103 |
cacttttggttgctagcactcttttagtacctatgatgttgtgttatggggaaggtagtgtcttgttacttataagtgttaagattaatgtttattttat |
202 |
Q |
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| T |
40681232 |
catttttggttgcttgcactcttttagtacctatgatgttgtgttatggggaaggtagtgtcttgttacttacaagtgttaagattaatttttattttat |
40681133 |
T |
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| Q |
203 |
ttttatgtggcggtgagttttgtttgtcgtgatgatgt |
240 |
Q |
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| T |
40681132 |
ttttatgtggcgatgagttttgtttgtggtgatgatgt |
40681095 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 152; Significance: 1e-80; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 3 - 240
Target Start/End: Complemental strand, 6705941 - 6705719
Alignment:
| Q |
3 |
aggcatggacttacgaaattagaggtctaagggaaaacatgttaggtggagcaatgtgtggtagaggatcatgttatgtgtaggctaccttttgttttgg |
102 |
Q |
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| T |
6705941 |
aggcatggacttacgaaattagaggtctaagggaaaacatgt---------------gtgccagaggatcatgttatgtgtaggttaccttttgttttgg |
6705857 |
T |
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| Q |
103 |
cacttttggttgctagcactcttttagtacctatgatgttgtgttatggggaaggtagtgtcttgttacttataagtgttaagattaatgtttattttat |
202 |
Q |
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| T |
6705856 |
cacttttgcttgcttgcactcttttaggacctatgatgttgtgttatggagaaggtagtgtcttgttacttataagtgttaagattaatttttattttat |
6705757 |
T |
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| Q |
203 |
ttttatgtggcggtgagttttgtttgtcgtgatgatgt |
240 |
Q |
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| T |
6705756 |
ttttatgtggcggtgagttttgtttgtggtgatgatgt |
6705719 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 188 - 240
Target Start/End: Complemental strand, 40900455 - 40900403
Alignment:
| Q |
188 |
taatgtttattttatttttatgtggcggtgagttttgtttgtcgtgatgatgt |
240 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
40900455 |
taatttttattttatttttatgtggcggtgagttttgtttgtggtgatgatgt |
40900403 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 17 - 53
Target Start/End: Original strand, 19603366 - 19603402
Alignment:
| Q |
17 |
gaaattagaggtctaagggaaaacatgttaggtggag |
53 |
Q |
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| T |
19603366 |
gaaattagaggtctaagggaaaacatgttaggtggag |
19603402 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 188 - 240
Target Start/End: Original strand, 21590413 - 21590465
Alignment:
| Q |
188 |
taatgtttattttatttttatgtggcggtgagttttgtttgtcgtgatgatgt |
240 |
Q |
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|||| |||||||||||||||||| | ||||| |||||||||| |||||||||| |
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| T |
21590413 |
taatttttattttatttttatgtagtggtgatttttgtttgtggtgatgatgt |
21590465 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 201 - 240
Target Start/End: Original strand, 42677514 - 42677553
Alignment:
| Q |
201 |
atttttatgtggcggtgagttttgtttgtcgtgatgatgt |
240 |
Q |
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| T |
42677514 |
atttttatgtgacggtgagttttgtttgtggtgatgatgt |
42677553 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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