View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2912_high_2 (Length: 542)
Name: NF2912_high_2
Description: NF2912
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2912_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 479; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 479; E-Value: 0
Query Start/End: Original strand, 10 - 521
Target Start/End: Original strand, 5957666 - 5958177
Alignment:
| Q |
10 |
ggagcagcacagagggagtttctacctacggtgcgtgtgcacgagtttccaatggacccagatatatacaccgaatggaagatgttacaatggaagccgc |
109 |
Q |
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| T |
5957666 |
ggagcagcacagagggagtttctacctacggtgcgtgtgcaggagtttccaatggacccagatatatacacagaatggaagatgttacaatggaagccgc |
5957765 |
T |
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| Q |
110 |
cggagtttgcgcgagcacctggtgggccaccgtcgaatgtggcggtggcccatgtcaggcttggcggacgggcggctttgttggggaaagttggggagga |
209 |
Q |
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| T |
5957766 |
cggagtttgcgcgagcacctggtgggccgccgtcgaatgtggcggtggcccatgtcaggcttggcggacgggcggctttgttggggaaagttggggagga |
5957865 |
T |
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| Q |
210 |
tgagtttggggaggagattgttttggggatgaataaggagaaggtgcagactagaggggtgaagtttgattcggggtttcggactgggtgtagttatatg |
309 |
Q |
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| T |
5957866 |
tgagtttggggaggagattgttttggggatgaataaggagaaggtgcagactagaggggtgaagtttgattcggggtttcggactgggtgtagttatatg |
5957965 |
T |
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| Q |
310 |
aaggtgaagtttgatgatgatgggaagatggggatggagattgttaaggaatgtgctgaggattctcttaggagtgatgaattgaatcttgctgttttga |
409 |
Q |
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| T |
5957966 |
aaggtgaagtttgatgatgatgggaagatggggatggagattgttaaggaatgtgctgaggattctcttaggagtgatgaattgaatcttgctgttttga |
5958065 |
T |
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| Q |
410 |
aagaggttttgttttttagctttaaattacttgcattgttaattgttactatttttgacacttatatttgcttannnnnnnactcaaaaacatagttatt |
509 |
Q |
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| T |
5958066 |
aagaggttttgttttttagctttaaattacttgcattgttaattgttactatttttgacacttatatttgcttatttttttactcaaaaacatagttatt |
5958165 |
T |
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| Q |
510 |
aatattaggtaa |
521 |
Q |
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| T |
5958166 |
aatattaggtaa |
5958177 |
T |
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