View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2912_high_6 (Length: 428)
Name: NF2912_high_6
Description: NF2912
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2912_high_6 |
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Alignment Details
Target: chr2 (Bit Score: 397; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 1 - 409
Target Start/End: Original strand, 34014432 - 34014840
Alignment:
| Q |
1 |
tctacatgtttagctagtgctgataactatgaatttggagtttatgaatggagtgttcaacttgttacaaataatagtcgaattgaaaagatactccttc |
100 |
Q |
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| T |
34014432 |
tctacatgtttagctagtgctgataactatgaatttggagtttatgaatggagtgttcaacttgttacaaataatagtcgaattgaaaagatactccttc |
34014531 |
T |
|
| Q |
101 |
ctatcttttggggcctaatgactctcaggtattttctcatcacattgtacacttcatgattttaaattgtagttgcgatgatgactaatgactatggtta |
200 |
Q |
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| T |
34014532 |
ctatcttttggggcctaatgactctcaggtattttctcatcacattgtacatttcatgattttaaattgtagttgcgatgatgactaatgactatggtta |
34014631 |
T |
|
| Q |
201 |
cgctgcaaacctttatattacggtaaaatgtggacaattcatgatgacatattgaattgaatagtaacaaaataccatgtacgtgattcatgcattattg |
300 |
Q |
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| T |
34014632 |
cgctgcaaacctttatattatggtaaaatgtggacaattcatgatgacatattgaattgaatagtaacaaaataccatgtacgtgattcatgcattattg |
34014731 |
T |
|
| Q |
301 |
gtaccgttgttgtagttaaggatgcttcatatgcactttatatatctcattgtcacaaaagttttttgttgatgtggtcagcacttttgggaacctccag |
400 |
Q |
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| T |
34014732 |
gtaccgttgttgtagttaaggatgcttcatatgcacattatatatctcattgtcacaaaagttttttgttgatgtggtcagcacttttgggaacctccag |
34014831 |
T |
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| Q |
401 |
agtacaacg |
409 |
Q |
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| T |
34014832 |
agtacaacg |
34014840 |
T |
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Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 195 - 229
Target Start/End: Complemental strand, 10164137 - 10164103
Alignment:
| Q |
195 |
tggttacgctgcaaacctttatattacggtaaaat |
229 |
Q |
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| T |
10164137 |
tggttacgctgcaaacctttatattgcggtaaaat |
10164103 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 193 - 233
Target Start/End: Complemental strand, 26331745 - 26331705
Alignment:
| Q |
193 |
tatggttacgctgcaaacctttatattacggtaaaatgtgg |
233 |
Q |
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| T |
26331745 |
tatggttacactgcgaacctttatattgcggtaaaatgtgg |
26331705 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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