View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2912_high_8 (Length: 354)
Name: NF2912_high_8
Description: NF2912
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2912_high_8 |
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Alignment Details
Target: chr2 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 34 - 334
Target Start/End: Complemental strand, 10088766 - 10088466
Alignment:
| Q |
34 |
ttgcacttttccatagtccaaaatgtaccaaacaagaatacatggatcacagtgctatagcgctatggtgtagcagaatttaaacaaatcgctattgttc |
133 |
Q |
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| T |
10088766 |
ttgcacttttccatagtccaaaatgtaccaaacaagaataaatggatcacagtgctataacgctatggcgtagcagaatttaaacaaatcgctattgttc |
10088667 |
T |
|
| Q |
134 |
cgcaatacagtatttaatttatgtagaaaatattgtcaaatagtagcggctataatggcactataagactgctgcgcagtgtaatttgaacaaactgcta |
233 |
Q |
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| T |
10088666 |
cgcaatacagtatttaatttatgtagaaaatattgtcaaatagcatcggctataatggcactataagactgctgcgcagtgtaatttgaacaaaccgcta |
10088567 |
T |
|
| Q |
234 |
ttttccgctacccacagttaacgacactgatggaacacaatattctcatttgtaaattgtcatctaaaatacatcaaagttgcacaacaacttcatgatg |
333 |
Q |
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| T |
10088566 |
ttttccgctacccacagttaacgacactgatggaacacaatattctcatttgtaaattgtcatctaaaatacatcaaagttgcacaacaacttcatgatg |
10088467 |
T |
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| Q |
334 |
a |
334 |
Q |
| |
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| T |
10088466 |
a |
10088466 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 87 - 135
Target Start/End: Complemental strand, 55470013 - 55469965
Alignment:
| Q |
87 |
gctatagcgctatggtgtagcagaatttaaacaaatcgctattgttccg |
135 |
Q |
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| T |
55470013 |
gctataccgctatagtgtagcggaatttaaacaaaccgctattgttccg |
55469965 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000008; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 85 - 136
Target Start/End: Original strand, 27743125 - 27743176
Alignment:
| Q |
85 |
gtgctatagcgctatggtgtagcagaatttaaacaaatcgctattgttccgc |
136 |
Q |
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| T |
27743125 |
gtgctatagcgctatcgtgtgtcagaattttaacaaattgctattgttccgc |
27743176 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 216 - 261
Target Start/End: Original strand, 7108269 - 7108314
Alignment:
| Q |
216 |
aatttgaacaaactgctattttccgctacccacagttaacgacact |
261 |
Q |
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| T |
7108269 |
aatttgaacaaactgctattttccgctatccacgattaacaacact |
7108314 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 88 - 133
Target Start/End: Original strand, 42581863 - 42581908
Alignment:
| Q |
88 |
ctatagcgctatggtgtagcagaatttaaacaaatcgctattgttc |
133 |
Q |
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| T |
42581863 |
ctatagcgctatgatgtagcagaattccaacaaatcgctcttgttc |
42581908 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 103 - 148
Target Start/End: Original strand, 21891005 - 21891050
Alignment:
| Q |
103 |
gtagcagaatttaaacaaatcgctattgttccgcaatacagtattt |
148 |
Q |
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| T |
21891005 |
gtagcagaatttcaacaaattgctattgttccacaatacaatattt |
21891050 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 95 - 140
Target Start/End: Complemental strand, 32427188 - 32427143
Alignment:
| Q |
95 |
gctatggtgtagcagaatttaaacaaatcgctattgttccgcaata |
140 |
Q |
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| T |
32427188 |
gctatggtgtagcagaatttgaacaaaccattattgttccgcaata |
32427143 |
T |
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