View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2912_low_10 (Length: 345)
Name: NF2912_low_10
Description: NF2912
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2912_low_10 |
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| [»] chr8 (5 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 325; Significance: 0; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 1 - 345
Target Start/End: Complemental strand, 28264469 - 28264125
Alignment:
| Q |
1 |
aagtacaggtaaggctagcaaagagtcagatgtgtatagttttggggttgttgccttggaaatcgcaactggaaagaaagctgttcaagttatgaaggaa |
100 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28264469 |
aagtacaggtaagactagcaaagagtcagatgtgtatagttttggggttgttgccttggaaatcgcaactggaaagaaagctgttcaagttatgaaggaa |
28264370 |
T |
|
| Q |
101 |
caaggtgaagataagggattaattgactgggtttgggatcattatggaagaggagaactacttgtgactatggatgagaatttgcaaaaggattttgatg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28264369 |
caaggtgaagataagggattaattgactgggtttgggatcattatggaagaggagaactacttgtgactatggatgagaatttgcaaaaggattttgatg |
28264270 |
T |
|
| Q |
201 |
agaaacaagtagagtttttgttgattgttggattatggtgtgctcatcctgatgtaagtttaagaccatcaattgtgcaagcaattcaagtgcttaattt |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28264269 |
agaaacaagtagagtttttgttgattgttggattatggtgtgctcatccggatgtaagtttaagaccatcaattgtgcaagcaattcaagtgcttaattt |
28264170 |
T |
|
| Q |
301 |
tgaggttgccttgccaaatcttccaccaaggaagactgttgcaac |
345 |
Q |
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||||||||| ||||||||||||||||||| |||| |||||||||| |
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| T |
28264169 |
tgaggttgcattgccaaatcttccaccaaagaagcctgttgcaac |
28264125 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 324
Target Start/End: Original strand, 28289267 - 28289590
Alignment:
| Q |
1 |
aagtacaggtaaggctagcaaagagtcagatgtgtatagttttggggttgttgccttggaaatcgcaactggaaagaaagctgttcaagttatgaaggaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||| |||||||||| ||||||||| ||| |
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| T |
28289267 |
aagtacaggtaaggctagcaaagagtcagatgtgtatagttttggggttgttgccttggagatcacaactggacggaaagctgttgaagttatgagggat |
28289366 |
T |
|
| Q |
101 |
caaggtgaagataagggattaattgactgggtttgggatcattatggaagaggagaactacttgtgactatggatgagaatttgcaaaaggattttgatg |
200 |
Q |
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||| || |||||||||||| ||||| ||||||||||||||| ||||||||||||| ||||||||||| |||||||||||||||| ||||||||| |||| |
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| T |
28289367 |
aaagatggagataagggattgattgagtgggtttgggatcatcatggaagaggagagctacttgtgaccatggatgagaatttgcgaaaggatttcgatg |
28289466 |
T |
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| Q |
201 |
agaaacaagtagagtttttgttgattgttggattatggtgtgctcatcctgatgtaagtttaagaccatcaattgtgcaagcaattcaagtgcttaattt |
300 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||| ||||||||||||||||| ||||| |
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| T |
28289467 |
agaaacaagtagagtgtttgttgattgttggattatggtgtgctcatcctgatgtaagtctaagaccatccattagacaagcaattcaagtgctaaattt |
28289566 |
T |
|
| Q |
301 |
tgaggttgccttgccaaatcttcc |
324 |
Q |
| |
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|||| |||| |||||||||||||| |
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| T |
28289567 |
tgagattgctttgccaaatcttcc |
28289590 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 181; E-Value: 9e-98
Query Start/End: Original strand, 1 - 329
Target Start/End: Original strand, 28279402 - 28279730
Alignment:
| Q |
1 |
aagtacaggtaaggctagcaaagagtcagatgtgtatagttttggggttgttgccttggaaatcgcaactggaaagaaagctgttcaagttatgaaggaa |
100 |
Q |
| |
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|||||||||||||||||||||||| || ||||| ||||| ||||||||||| | |||||| ||| ||||||||| |||||| ||| |||||||| |||| |
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| T |
28279402 |
aagtacaggtaaggctagcaaagaatctgatgtctatagctttggggttgtcgtcttggagatcacaactggaaggaaagccgttgaagttatggaggac |
28279501 |
T |
|
| Q |
101 |
caaggtgaagataagggattaattgactgggtttgggatcattatggaagaggagaactacttgtgactatggatgagaatttgcaaaaggattttgatg |
200 |
Q |
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||| || |||||||||||| ||||| ||||||||||||||||||||||||| |||| |||| ||||| |||||||||||||||| ||||||||| |||| |
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| T |
28279502 |
aaagatggagataagggattgattgagtgggtttgggatcattatggaagagaagaaatactcgtgaccatggatgagaatttgcgaaaggatttcgatg |
28279601 |
T |
|
| Q |
201 |
agaaacaagtagagtttttgttgattgttggattatggtgtgctcatcctgatgtaagtttaagaccatcaattgtgcaagcaattcaagtgcttaattt |
300 |
Q |
| |
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||||||||||||||| |||||||||||||||||||||||||| |||||||||||| ||| |||||||||| ||| |||||||| |||||||||||||| |
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| T |
28279602 |
agaaacaagtagagtgtttgttgattgttggattatggtgtgttcatcctgatgttagtctaagaccatcgattagacaagcaatccaagtgcttaattt |
28279701 |
T |
|
| Q |
301 |
tgaggttgccttgccaaatcttccaccaa |
329 |
Q |
| |
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|||||||| | |||||||| | ||||||| |
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| T |
28279702 |
tgaggttgacatgccaaatttgccaccaa |
28279730 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 5 - 329
Target Start/End: Complemental strand, 28294280 - 28293956
Alignment:
| Q |
5 |
acaggtaaggctagcaaagagtcagatgtgtatagttttggggttgttgccttggaaatcgcaactggaaagaaagctgttcaagttatgaaggaacaag |
104 |
Q |
| |
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||||||| ||| || ||||||||||||||||||||||||||| | ||||| ||||| || | ||||| ||||||||| | |||| |||||| || || |
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| T |
28294280 |
acaggtagggcaagtaaagagtcagatgtgtatagttttgggatagttgctttggagataactactggtaagaaagctactaaagtgatgaagcaaaaaa |
28294181 |
T |
|
| Q |
105 |
gtgaagataagggattaattgactgggtttgggatcattatggaagaggagaactacttgtgactatggatgagaatttgcaaaaggattttgatgagaa |
204 |
Q |
| |
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|||||| ||||| | ||||| ||| ||||||||||||||||||| ||||| |||||||| | |||||||| ||||||||||| |||||||||||||| |
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| T |
28294180 |
atgaagagcagggaatgattgaatggatttgggatcattatggaagtggagagctacttgtcgccatggatgaaaatttgcaaaatgattttgatgagaa |
28294081 |
T |
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| Q |
205 |
acaagtagagtttttgttgattgttggattatggtgtgctcatcctgatgtaagtttaagaccatcaattgtgcaagcaattcaagtgcttaattttgag |
304 |
Q |
| |
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| ||||||||| ||| ||||||||||||| |||||||||||||||||||| ||| | |||||||| ||| ||||||||||||||||||||||||||| |
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| T |
28294080 |
agaagtagagtgcttgatgattgttggattgtggtgtgctcatcctgatgttagtcttagaccatcgattagacaagcaattcaagtgcttaattttgag |
28293981 |
T |
|
| Q |
305 |
gttgccttgccaaatcttccaccaa |
329 |
Q |
| |
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||||||||||||||||||||||||| |
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| T |
28293980 |
gttgccttgccaaatcttccaccaa |
28293956 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 2 - 329
Target Start/End: Complemental strand, 28304485 - 28304158
Alignment:
| Q |
2 |
agtacaggtaaggctagcaaagagtcagatgtgtatagttttggggttgttgccttggaaatcgcaactggaaagaaagctgttcaagttatgaaggaac |
101 |
Q |
| |
|
|||||||| | ||| || |||||||||||||| |||||||||||| | |||| ||| || || | | ||||| |||||| | ||||||||||||| |
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| T |
28304485 |
agtacaggaagggcgagtaaagagtcagatgtttatagttttgggatagttgtcttagagataacctccggaaaaaaagctactgaagttatgaaggaga |
28304386 |
T |
|
| Q |
102 |
aaggtgaagataagggattaattgactgggtttgggatcattatggaagaggagaactacttgtgactatggatgagaatttgcaaaaggattttgatga |
201 |
Q |
| |
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||| |||||| |||||| | ||||| |||||||||||||||||||||| |||||| ||||||||| | ||||||||||||||| || ||||||||||| |
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| T |
28304385 |
aagatgaagagaagggaatgattgagtgggtttgggatcattatggaaaaggagagctacttgtggcaatggatgagaatttgaggaaagattttgatga |
28304286 |
T |
|
| Q |
202 |
gaaacaagtagagtttttgttgattgttggattatggtgtgctcatcctgatgtaagtttaagaccatcaattgtgcaagcaattcaagtgcttaatttt |
301 |
Q |
| |
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|||||||||||||| ||| |||||||||||||||||||||||||||||||||| ||| |||||||||||||| ||||| |||||||||||||||||| |
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| T |
28304285 |
gaaacaagtagagtgcttgatgattgttggattatggtgtgctcatcctgatgttagtctaagaccatcaattagacaagccattcaagtgcttaatttt |
28304186 |
T |
|
| Q |
302 |
gaggttgccttgccaaatcttccaccaa |
329 |
Q |
| |
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|||||| || ||||||||||||| |||| |
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| T |
28304185 |
gaggtttccatgccaaatcttccgccaa |
28304158 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 278 - 330
Target Start/End: Complemental strand, 36941378 - 36941326
Alignment:
| Q |
278 |
caagcaattcaagtgcttaattttgaggttgccttgccaaatcttccaccaag |
330 |
Q |
| |
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||||| |||||||||||||||||||| ||| | ||||| ||||||||| |||| |
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| T |
36941378 |
caagctattcaagtgcttaattttgaagttccattgcctaatcttccatcaag |
36941326 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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