View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2912_low_18 (Length: 248)
Name: NF2912_low_18
Description: NF2912
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2912_low_18 |
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Alignment Details
Target: chr5 (Bit Score: 177; Significance: 2e-95; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 3 - 236
Target Start/End: Original strand, 37244115 - 37244353
Alignment:
| Q |
3 |
gagtaaagtacattttgatgatttcatcgtatcaaaagatggtcttcattcttcgtaggtgagattttcaagcctccctctagttacccatctaccctcg |
102 |
Q |
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| T |
37244115 |
gagtaaagtacattttgatgatttcatcgtatcaaaagatggtcttcatttttcgtaggtgagattttcaagcctccctttagttacccgtctaccctcg |
37244214 |
T |
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| Q |
103 |
tttcaacagtttattcaaacacttgaagca------ttatactcatcaaattttcctttgaatttttatactcatcaaggaccattcaaatttcaataaa |
196 |
Q |
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|||||||||||||||||| ||||||||||| || || || ||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
37244215 |
tttcaacagtttattcaaccacttgaagcatacccctttgacaca-caaattttcctttgaatttttatactcatgaaggaccattcaaatttcaataaa |
37244313 |
T |
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| Q |
197 |
taacaaataccattatttttcctattcaatgatgtttatg |
236 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
37244314 |
taacaaataccattatttttcctattcaatgatgtttatg |
37244353 |
T |
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