View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2912_low_21 (Length: 237)
Name: NF2912_low_21
Description: NF2912
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2912_low_21 |
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Alignment Details
Target: chr6 (Bit Score: 67; Significance: 7e-30; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 94 - 219
Target Start/End: Original strand, 27663546 - 27663672
Alignment:
| Q |
94 |
aaaattaatcaaccacaatacaaataacttatagagctagaacatgtaca-gcaattaagtctaaaaagaactagaacgagatgttcatatataagttca |
192 |
Q |
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| T |
27663546 |
aaaattaatcaaccataatacaaataacatatagagcttgaacatgtacatgtaattaagtgtaaaaagatttagtatgagatggtcatatataagtcca |
27663645 |
T |
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| Q |
193 |
aaaagagcaaagtcatggtacgctaaa |
219 |
Q |
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| T |
27663646 |
aaaagaggaaagtcatggtaagctaaa |
27663672 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 46 - 212
Target Start/End: Complemental strand, 26951630 - 26951463
Alignment:
| Q |
46 |
agatatattatttcaattttactacttcccttttaacnnnnnnnnnttaaaa-ttaatcaaccacaatacaaataacttatagagctagaacatgtac-a |
143 |
Q |
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| T |
26951630 |
agatatatcatttcaattttactagttcccttttaacaaaaaataaataaaaattaatcaaccacaatacaaataacttatagagcttgaacatgtactt |
26951531 |
T |
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| Q |
144 |
gcaattaagtctaaaaagaactagaacgagatgttcatatataagttcaaaaagagcaaagtcatggta |
212 |
Q |
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| T |
26951530 |
gtaattaag-gtaaaaacaagtagtatgagatagtcatatataagtccaaaataagcaaagtcatggta |
26951463 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 94 - 143
Target Start/End: Complemental strand, 26960909 - 26960860
Alignment:
| Q |
94 |
aaaattaatcaaccacaatacaaataacttatagagctagaacatgtaca |
143 |
Q |
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| T |
26960909 |
aaaattaatcaaccacaatacaaataacatatagagctagaacatgtaca |
26960860 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 46 - 133
Target Start/End: Complemental strand, 26979269 - 26979180
Alignment:
| Q |
46 |
agatatattatttcaattttactacttcccttttaac--nnnnnnnnnttaaaattaatcaaccacaatacaaataacttatagagctag |
133 |
Q |
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| T |
26979269 |
agatatatcatttcaattttactagttcccttttaacaaaaaataaaataaaaattaatcaaccacaatacaaataacatatagagctag |
26979180 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 97 - 131
Target Start/End: Complemental strand, 26850491 - 26850457
Alignment:
| Q |
97 |
attaatcaaccacaatacaaataacttatagagct |
131 |
Q |
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| T |
26850491 |
attaatcaaccacaatacaaataacttttagagct |
26850457 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 46 - 82
Target Start/End: Complemental strand, 26813378 - 26813342
Alignment:
| Q |
46 |
agatatattatttcaattttactacttcccttttaac |
82 |
Q |
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| T |
26813378 |
agatatatcatttcaattttactagttcccttttaac |
26813342 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 46 - 82
Target Start/End: Original strand, 27663496 - 27663532
Alignment:
| Q |
46 |
agatatattatttcaattttactacttcccttttaac |
82 |
Q |
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|||||||| ||||||||||||||| |||||||||||| |
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|
| T |
27663496 |
agatatatcatttcaattttactagttcccttttaac |
27663532 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 157 - 208
Target Start/End: Original strand, 28131901 - 28131952
Alignment:
| Q |
157 |
aaaagaactagaacgagatgttcatatataagttcaaaaagagcaaagtcat |
208 |
Q |
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| T |
28131901 |
aaaaaaactagaacgagatggtcatatataagtccaaaaagagccaagtcat |
28131952 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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