View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2912_low_4 (Length: 481)
Name: NF2912_low_4
Description: NF2912
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2912_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 412; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 412; E-Value: 0
Query Start/End: Original strand, 16 - 472
Target Start/End: Complemental strand, 1765153 - 1764696
Alignment:
| Q |
16 |
gaaatatggctacagagctctggtctggcatagtattactattttatccctgattaaactctttctgtgatgctttaggatgtgcattctcggaaaggtc |
115 |
Q |
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| T |
1765153 |
gaaatatggctacagagctctggtctggcatagtattactattttatccctgattaaactctttctgtgatgctttaggatgtgcattctcggaaaggtc |
1765054 |
T |
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| Q |
116 |
tgatagcaatggttcaaaagaggaaaaagttgctgaaatacctcagaagaaccgactgggattcctattgttttgttctctctaagttaggtctacgtga |
215 |
Q |
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| T |
1765053 |
tgatagcaatggttcaaaagaggaaaaagttgctgaaatacctcagaagaaccgactgggattcctattgttttgttctctctaagttaggtctacgtga |
1764954 |
T |
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| Q |
216 |
taatccagaatatacttataaagcccggactggtaaatcgggtgacgtagccaattaaataaaccccaacataaactaattg-nnnnnnnnnngaacacc |
314 |
Q |
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| T |
1764953 |
taatccagaatatacttataaagcccggactggtaaatcgggtgacgtagccaattaaataaaccccaacataaactaattgaaaaaaaaaaagaacacc |
1764854 |
T |
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| Q |
315 |
cacctgattttatccggtccgagtgtttgactagccagttcaagcagcttagtcaatggttttccatattttgcttctacaagtgttgtttccatatatc |
414 |
Q |
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|| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1764853 |
cagctgattttatccggtctgagtgtttgactagccagttcaagcagcttagtcaatggttttccatattttgcttctacaagtgttgtttccatatatc |
1764754 |
T |
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| Q |
415 |
catggctgaagaaatgtgttgctccattttcttttttctgtatgaagatgagaataat |
472 |
Q |
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| T |
1764753 |
catggctgaagaaatgtgttgctccattttcttttttctgtatgaagatgagaataat |
1764696 |
T |
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