View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2912_low_5 (Length: 429)
Name: NF2912_low_5
Description: NF2912
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2912_low_5 |
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Alignment Details
Target: chr6 (Bit Score: 424; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 424; E-Value: 0
Query Start/End: Original strand, 1 - 428
Target Start/End: Complemental strand, 7801179 - 7800752
Alignment:
| Q |
1 |
gcgtaattacaagtgtcggtgtcgggacacgcctaatccgaagagtgtgtgctccataggtcacaaccagtaacattagtacaataattatttttagaga |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7801179 |
gcgtaattacaagtgtcggtgtcgggacacgcctaatccgaagagtgtgtgctccataggtcacaaccagtaacattagtacaataattatttttagaga |
7801080 |
T |
|
| Q |
101 |
agggaaaaatatgttcatggaaaacaacaatccctataaataaaaattatgcaagccataaacaacataccaaagaaacatagagaaagagggaacctga |
200 |
Q |
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| T |
7801079 |
agggaaaaatatgttcatggaaaacaagaatccctataaataaaaattatgcaagccataaacaacataccaaagaaacatagagaaagagggaacctga |
7800980 |
T |
|
| Q |
201 |
gagttgttcaagcgtgatgacaacggaacaaagctgctgataaaggatttcacgaccctggcaaatgaaaatcacaatgtgaacgaaagaactttgatac |
300 |
Q |
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| T |
7800979 |
gagttgttcaagcgtgatgacaacggaacaaagctgctgataaaggatttcacgaccctggcaaatgaaaatcacaatgtgaacgaaagaactttgatac |
7800880 |
T |
|
| Q |
301 |
aggttaattgaagaagaaaatgaattcgttgttaccgtgcaggaaaaaggagaaggcaccgaatcgcagaatgtgaatctttcttgatagtgaagatgca |
400 |
Q |
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| T |
7800879 |
aggttaattgaagaagaaaatgaattcgttgttaccgtgcaggaaaaaggagaaggcaccgaatcgcagaatgtgaatctttcttgatagtgaagatgca |
7800780 |
T |
|
| Q |
401 |
gaaacggtgatggaatttgagtttcaag |
428 |
Q |
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| T |
7800779 |
gaaacggtgatggaatttgagtttcaag |
7800752 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 3 - 48
Target Start/End: Complemental strand, 426535 - 426491
Alignment:
| Q |
3 |
gtaattacaagtgtcggtgtcgggacacgcctaatccgaagagtgt |
48 |
Q |
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| T |
426535 |
gtaattacaagtgtcggtgtc-ggacacgcctaatctgaggagtgt |
426491 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 3 - 48
Target Start/End: Complemental strand, 19536418 - 19536374
Alignment:
| Q |
3 |
gtaattacaagtgtcggtgtcgggacacgcctaatccgaagagtgt |
48 |
Q |
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||||||||||||||||||||| ||||||||||||||||| |||||| |
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| T |
19536418 |
gtaattacaagtgtcggtgtc-ggacacgcctaatccgaggagtgt |
19536374 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 3 - 48
Target Start/End: Original strand, 10298607 - 10298656
Alignment:
| Q |
3 |
gtaattacaagtgtcggtgtcg----ggacacgcctaatccgaagagtgt |
48 |
Q |
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|||||||||||||||||||||| ||||||||||||||||| |||||| |
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| T |
10298607 |
gtaattacaagtgtcggtgtcgtatcggacacgcctaatccgaggagtgt |
10298656 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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