View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2912_low_7 (Length: 372)
Name: NF2912_low_7
Description: NF2912
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2912_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 218; Significance: 1e-120; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 9 - 238
Target Start/End: Original strand, 45641930 - 45642159
Alignment:
| Q |
9 |
attcacgttttgagtcattgttatttataaaattagcaactgaaacacaagtctttgttactgttgttcagttggattgagtggcatgctctgattctta |
108 |
Q |
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| T |
45641930 |
attcatgttttgagtcattgttatttataaaattagcaactgaaacacaagtctttgttactgtcgttcagttggattgagtggcatgctctgattctta |
45642029 |
T |
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| Q |
109 |
tgtatatgtttttgaggatatatgttaatgcctcacatattttaatcttcatatatttggaaagctgtagagaacttagaaacaaaatttgcattctgga |
208 |
Q |
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| T |
45642030 |
tgtatatgtttttgaggatatatgttaatgcctcacatattttaatcttcatatatttggaaagctgtagagaacttagaaacaaaatttgcattctgga |
45642129 |
T |
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| Q |
209 |
ttgtatacttgggtcatagattggtatggc |
238 |
Q |
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| T |
45642130 |
ttgtatacttggctcatagattggtatggc |
45642159 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 301 - 365
Target Start/End: Original strand, 45642222 - 45642286
Alignment:
| Q |
301 |
gactgatgacattaaagggttccaatgataataactatgcaatcagtattctattgttctctgct |
365 |
Q |
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| T |
45642222 |
gactgatgacattaaagggttccaatgataataactatgcaatcagtattctattgttctctgct |
45642286 |
T |
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