View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2913_high_2 (Length: 336)

Name: NF2913_high_2
Description: NF2913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2913_high_2
NF2913_high_2
[»] chr8 (8 HSPs)
chr8 (16-317)||(17088717-17089018)
chr8 (25-230)||(17082643-17082850)
chr8 (228-291)||(17028436-17028499)
chr8 (228-291)||(17558872-17558935)
chr8 (187-230)||(34477133-34477176)
chr8 (80-230)||(37043716-37043867)
chr8 (186-230)||(9054747-9054791)
chr8 (228-272)||(38676895-38676939)
[»] scaffold0076 (1 HSPs)
scaffold0076 (228-317)||(6709-6796)
[»] chr5 (4 HSPs)
chr5 (228-298)||(39292180-39292250)
chr5 (189-229)||(31336221-31336261)
chr5 (193-229)||(31304613-31304649)
chr5 (228-313)||(18594896-18594979)
[»] chr3 (5 HSPs)
chr3 (229-308)||(26445050-26445129)
chr3 (229-291)||(42253535-42253597)
chr3 (229-308)||(2353278-2353357)
chr3 (229-291)||(19930009-19930071)
chr3 (189-228)||(44658396-44658435)
[»] chr7 (3 HSPs)
chr7 (229-291)||(13815820-13815882)
chr7 (228-291)||(22301124-22301187)
chr7 (187-229)||(23580826-23580868)
[»] chr6 (4 HSPs)
chr6 (229-291)||(24044906-24044968)
chr6 (191-230)||(30684016-30684055)
chr6 (190-230)||(31418929-31418969)
chr6 (187-229)||(33690736-33690778)
[»] chr4 (7 HSPs)
chr4 (189-230)||(18912276-18912317)
chr4 (190-226)||(39593874-39593910)
chr4 (228-291)||(895524-895587)
chr4 (187-230)||(34670576-34670619)
chr4 (186-230)||(5112380-5112424)
chr4 (228-272)||(13010525-13010569)
chr4 (228-272)||(20058095-20058139)
[»] scaffold0028 (2 HSPs)
scaffold0028 (228-272)||(110202-110246)
scaffold0028 (228-272)||(127781-127825)
[»] chr1 (5 HSPs)
chr1 (229-291)||(49387579-49387641)
chr1 (229-267)||(43254197-43254235)
chr1 (187-220)||(918390-918423)
chr1 (171-228)||(3021881-3021938)
chr1 (70-122)||(1050660-1050712)
[»] chr2 (6 HSPs)
chr2 (229-285)||(10941405-10941460)
chr2 (229-285)||(10947274-10947329)
chr2 (228-272)||(21189483-21189527)
chr2 (228-291)||(14433572-14433635)
chr2 (187-230)||(44732094-44732137)
chr2 (229-275)||(10938054-10938099)


Alignment Details
Target: chr8 (Bit Score: 262; Significance: 1e-146; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 16 - 317
Target Start/End: Complemental strand, 17089018 - 17088717
Alignment:
Q  16 acacaatagaagcattcttttatcatttatcgagtaatcttgaaaagccaaaggaacttatacactaagtgttgagtttctttgggtgagattcttggat 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  17089018 acacaatagaagcattcttttatcatttatcgagtaatcttgaaaagccaaaggaacttatacactaagtgttgagtttctttggatgagattcttggat 17088919  T
Q  116 tgggaaatacttcatgaacatattggatattgagatctcattagaagaagaattacaaaaacttgttttcatgttttctcttaggatttattgtgggttt 215  Q
    ||||||||||||| ||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||    
T  17088918 tgggaaatacttcgtgaacatgttggatattgagatctcattagaagaagaatcacaaaaacttgttttcatgttttcttttaggatttattgtgggttt 17088819  T
Q  216 gagtgacttgaaaaaatccttaaggacagtgactatgtcaagcctcatgttagataatggtttattgttttgcaggctacatatgagatgttgatagagt 315  Q
    || ||||||||||||||||| ||||||||||||||||||| |||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  17088818 gactgacttgaaaaaatcctcaaggacagtgactatgtcacgcctcaggttagataattgtttattgttttgcaggctacatatgagatgttgatagagt 17088719  T
Q  316 tg 317  Q
    ||    
T  17088718 tg 17088717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 25 - 230
Target Start/End: Complemental strand, 17082850 - 17082643
Alignment:
Q  25 aagcattcttttatcatttatcgagtaatcttgaaaagccaaaggaacttatacactaagtgttgagtttctttgggtgagattcttggattgggaaata 124  Q
    ||||||| ||||||||||| | |||||||||||||| ||||||| |||||| |||||||  ||   || ||||||| ||||||| |||||  || || ||    
T  17082850 aagcattattttatcatttgttgagtaatcttgaaatgccaaagtaacttagacactaaaagtgttgtgtctttggttgagatttttggaaaggaaagta 17082751  T
Q  125 cttcatgaacatattggatattgagatctcattagaagaagaattacaaaaa----cttgttttcatgttttctcttaggatttattgtgggtttgagtg 220  Q
    |||||| ||| | ||   || |||||||||||||||||||  || | |||||    ||| ||||| |||||||||| |||||| | |||  |||||| ||    
T  17082750 cttcataaacctttt--ttagtgagatctcattagaagaatgatgaaaaaaaacttctttttttcttgttttctctgaggattcagtgtatgtttgaatg 17082653  T
Q  221 acttgaaaaa 230  Q
    |||| |||||    
T  17082652 acttaaaaaa 17082643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 228 - 291
Target Start/End: Original strand, 17028436 - 17028499
Alignment:
Q  228 aaaatccttaaggacagtgactatgtcaagcctcatgttagataatggtttattgttttgcagg 291  Q
    |||||||| ||||||||||||| ||||| |||||| |||| ||||| || | ||||||||||||    
T  17028436 aaaatcctcaaggacagtgactgtgtcacgcctcaggttacataatagtattttgttttgcagg 17028499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 228 - 291
Target Start/End: Original strand, 17558872 - 17558935
Alignment:
Q  228 aaaatccttaaggacagtgactatgtcaagcctcatgttagataatggtttattgttttgcagg 291  Q
    |||||||| ||||||||||||| ||||| |||||| |||| ||||| || | ||||||||||||    
T  17558872 aaaatcctcaaggacagtgactgtgtcacgcctcaggttacataatagtattttgttttgcagg 17558935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 187 - 230
Target Start/End: Original strand, 34477133 - 34477176
Alignment:
Q  187 tgttttctcttaggatttattgtgggtttgagtgacttgaaaaa 230  Q
    ||||||||||| ||||| ||||||| ||||||||||||||||||    
T  34477133 tgttttctctttggattcattgtggatttgagtgacttgaaaaa 34477176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 80 - 230
Target Start/End: Complemental strand, 37043867 - 37043716
Alignment:
Q  80 ctaagtgttgagtttctttgggtgagattcttggattgggaaatacttcatgaacatattggatattgagatctcattagaagaagaattacaaaaactt 179  Q
    ||||| ||||||| |||||| ||||||||||||||  || ||| |||| |  ||||  ||||||  |||||| |||||||| ||| ||| | ||||||||    
T  37043867 ctaagggttgagtgtctttgagtgagattcttggaccggaaaacacttgacaaacaccttggatggtgagatttcattagaggaaaaatcaaaaaaactt 37043768  T
Q  180 gttttcatg-ttttctcttaggatttattgtgggtttgagtgacttgaaaaa 230  Q
      | |  || |||||| |||| ||| |||| |||||||||||||||||||||    
T  37043767 tatcttttgtttttctattagtattcattgcgggtttgagtgacttgaaaaa 37043716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 186 - 230
Target Start/End: Original strand, 9054747 - 9054791
Alignment:
Q  186 atgttttctcttaggatttattgtgggtttgagtgacttgaaaaa 230  Q
    |||||||||||||||||| |||| | || ||||||||||||||||    
T  9054747 atgttttctcttaggattcattgagagtgtgagtgacttgaaaaa 9054791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 228 - 272
Target Start/End: Original strand, 38676895 - 38676939
Alignment:
Q  228 aaaatccttaaggacagtgactatgtcaagcctcatgttagataa 272  Q
    |||||||| ||||||||||||||||||| |||||| |||| ||||    
T  38676895 aaaatcctcaaggacagtgactatgtcacgcctcaggttatataa 38676939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0076 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: scaffold0076
Description:

Target: scaffold0076; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 228 - 317
Target Start/End: Complemental strand, 6796 - 6709
Alignment:
Q  228 aaaatccttaaggacagtgactatgtcaagcctcatgttagataatggtttattgttttgcaggctacatatgagatgttgatagagttg 317  Q
    |||||||| || |||||||||||||||| ||||||  ||||||||||||||||||||||||||| ||||||  || ||||||||||||||    
T  6796 aaaatcctcaatgacagtgactatgtcacgcctcagtttagataatggtttattgttttgcaggttacata--agttgttgatagagttg 6709  T

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Target: chr5 (Bit Score: 51; Significance: 3e-20; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 228 - 298
Target Start/End: Original strand, 39292180 - 39292250
Alignment:
Q  228 aaaatccttaaggacagtgactatgtcaagcctcatgttagataatggtttattgttttgcaggctacata 298  Q
    |||||||||||||||||||||||| |||  ||||| |||||||||||||||||||||||||||| ||||||    
T  39292180 aaaatccttaaggacagtgactatatcacacctcaggttagataatggtttattgttttgcaggttacata 39292250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 189 - 229
Target Start/End: Complemental strand, 31336261 - 31336221
Alignment:
Q  189 ttttctcttaggatttattgtgggtttgagtgacttgaaaa 229  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  31336261 ttttctcttaggatttattgtgggtttgagtgacttgaaaa 31336221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 193 - 229
Target Start/End: Complemental strand, 31304649 - 31304613
Alignment:
Q  193 ctcttaggatttattgtgggtttgagtgacttgaaaa 229  Q
    |||||||||||||||||||||||||||||||||||||    
T  31304649 ctcttaggatttattgtgggtttgagtgacttgaaaa 31304613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 228 - 313
Target Start/End: Original strand, 18594896 - 18594979
Alignment:
Q  228 aaaatccttaaggacagtgactatgtcaagcctcatgttagataatggtttattgttttgcaggctacatatgagatgttgataga 313  Q
    |||||| | |||||||||||| |||||| |||||| |||| ||||| || | |||||||||||| |||  ||||| ||||||||||    
T  18594896 aaaatcttcaaggacagtgacaatgtcacgcctcaggttacataatagtattttgttttgcaggttac--atgagttgttgataga 18594979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 5e-16; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 229 - 308
Target Start/End: Complemental strand, 26445129 - 26445050
Alignment:
Q  229 aaatccttaaggacagtgactatgtcaagcctcatgttagataatggtttattgttttgcaggctacatatgagatgttg 308  Q
    ||||||||||||||||||||| ||||| ||||||||||| |||   ||||||| ||||||||| |||||||||| |||||    
T  26445129 aaatccttaaggacagtgactttgtcatgcctcatgttatatatccgtttattattttgcaggttacatatgagttgttg 26445050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 229 - 291
Target Start/End: Complemental strand, 42253597 - 42253535
Alignment:
Q  229 aaatccttaaggacagtgactatgtcaagcctcatgttagataatggtttattgttttgcagg 291  Q
    ||||||||||||||||||||| ||||| ||||||||||| |||| |||||| | |||||||||    
T  42253597 aaatccttaaggacagtgactttgtcacgcctcatgttatataacggtttactattttgcagg 42253535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 229 - 308
Target Start/End: Original strand, 2353278 - 2353357
Alignment:
Q  229 aaatccttaaggacagtgactatgtcaagcctcatgttagataatggtttattgttttgcaggctacatatgagatgttg 308  Q
    ||||||||||||||| |||||   ||| |||||| |||| |||| |||||||| ||||||||| |||||||||| |||||    
T  2353278 aaatccttaaggacaatgacttcatcatgcctcaggttatataacggtttattattttgcaggttacatatgagttgttg 2353357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 229 - 291
Target Start/End: Complemental strand, 19930071 - 19930009
Alignment:
Q  229 aaatccttaaggacagtgactatgtcaagcctcatgttagataatggtttattgttttgcagg 291  Q
    |||||||||||||| |||||| ||||| ||||||||||| |||| |||||| | |||||||||    
T  19930071 aaatccttaaggacggtgactttgtcacgcctcatgttatataacggtttactattttgcagg 19930009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 189 - 228
Target Start/End: Original strand, 44658396 - 44658435
Alignment:
Q  189 ttttctcttaggatttattgtgggtttgagtgacttgaaa 228  Q
    ||||||||| ||||| ||||||||||||||||||||||||    
T  44658396 ttttctcttgggattaattgtgggtttgagtgacttgaaa 44658435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 229 - 291
Target Start/End: Original strand, 13815820 - 13815882
Alignment:
Q  229 aaatccttaaggacagtgactatgtcaagcctcatgttagataatggtttattgttttgcagg 291  Q
    ||||||||||||||||||||| ||||| ||||||||||| ||||||| ||| ||||| |||||    
T  13815820 aaatccttaaggacagtgactttgtcacgcctcatgttatataatggattactgtttggcagg 13815882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 228 - 291
Target Start/End: Complemental strand, 22301187 - 22301124
Alignment:
Q  228 aaaatccttaaggacagtgactatgtcaagcctcatgttagataatggtttattgttttgcagg 291  Q
    |||||||| ||||||||||||||||||| |||||| |||| ||||| || | ||||||||||||    
T  22301187 aaaatcctcaaggacagtgactatgtcacgcctcaggttacataatagtattttgttttgcagg 22301124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 187 - 229
Target Start/End: Original strand, 23580826 - 23580868
Alignment:
Q  187 tgttttctcttaggatttattgtgggtttgagtgacttgaaaa 229  Q
    |||||||||||| |||  |||||||||||||||||||||||||    
T  23580826 tgttttctcttatgatccattgtgggtttgagtgacttgaaaa 23580868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 229 - 291
Target Start/End: Complemental strand, 24044968 - 24044906
Alignment:
Q  229 aaatccttaaggacagtgactatgtcaagcctcatgttagataatggtttattgttttgcagg 291  Q
    ||||||||||||||||||||| ||||| ||||||||||| ||||||| ||| ||||| |||||    
T  24044968 aaatccttaaggacagtgactttgtcacgcctcatgttatataatggattactgtttggcagg 24044906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 191 - 230
Target Start/End: Complemental strand, 30684055 - 30684016
Alignment:
Q  191 ttctcttaggatttattgtgggtttgagtgacttgaaaaa 230  Q
    ||||||| ||||||||||||||||||||||||||||||||    
T  30684055 ttctcttcggatttattgtgggtttgagtgacttgaaaaa 30684016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 190 - 230
Target Start/End: Original strand, 31418929 - 31418969
Alignment:
Q  190 tttctcttaggatttattgtgggtttgagtgacttgaaaaa 230  Q
    |||||||||| |||| |||||||||||||||||||||||||    
T  31418929 tttctcttagaatttgttgtgggtttgagtgacttgaaaaa 31418969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 187 - 229
Target Start/End: Original strand, 33690736 - 33690778
Alignment:
Q  187 tgttttctcttaggatttattgtgggtttgagtgacttgaaaa 229  Q
    |||||| |||||||||| || ||||||||||||||||||||||    
T  33690736 tgttttttcttaggattcatcgtgggtttgagtgacttgaaaa 33690778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 189 - 230
Target Start/End: Original strand, 18912276 - 18912317
Alignment:
Q  189 ttttctcttaggatttattgtgggtttgagtgacttgaaaaa 230  Q
    ||||||||||||||| ||||||||||||||||||||||||||    
T  18912276 ttttctcttaggattcattgtgggtttgagtgacttgaaaaa 18912317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 190 - 226
Target Start/End: Complemental strand, 39593910 - 39593874
Alignment:
Q  190 tttctcttaggatttattgtgggtttgagtgacttga 226  Q
    |||||||||||||| ||||||||||||||||||||||    
T  39593910 tttctcttaggattcattgtgggtttgagtgacttga 39593874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 228 - 291
Target Start/End: Original strand, 895524 - 895587
Alignment:
Q  228 aaaatccttaaggacagtgactatgtcaagcctcatgttagataatggtttattgttttgcagg 291  Q
    |||||||| ||||||||||||||||||| | |||| |||||||||  ||||| | |||||||||    
T  895524 aaaatcctcaaggacagtgactatgtcacgactcaggttagataacagtttactattttgcagg 895587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 187 - 230
Target Start/End: Original strand, 34670576 - 34670619
Alignment:
Q  187 tgttttctcttaggatttattgtgggtttgagtgacttgaaaaa 230  Q
    ||||||||||||||||| |||||| || ||||||||||||||||    
T  34670576 tgttttctcttaggattcattgtgagtgtgagtgacttgaaaaa 34670619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 186 - 230
Target Start/End: Complemental strand, 5112424 - 5112380
Alignment:
Q  186 atgttttctcttaggatttattgtgggtttgagtgacttgaaaaa 230  Q
    |||||||||||||||||| |||||| || |||||||||| |||||    
T  5112424 atgttttctcttaggattcattgtgagtgtgagtgacttaaaaaa 5112380  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 228 - 272
Target Start/End: Complemental strand, 13010569 - 13010525
Alignment:
Q  228 aaaatccttaaggacagtgactatgtcaagcctcatgttagataa 272  Q
    |||||||| ||||||||||||||||||| |||||| |||| ||||    
T  13010569 aaaatcctcaaggacagtgactatgtcacgcctcaggttatataa 13010525  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 228 - 272
Target Start/End: Complemental strand, 20058139 - 20058095
Alignment:
Q  228 aaaatccttaaggacagtgactatgtcaagcctcatgttagataa 272  Q
    |||||||| ||||||||||||||||||| |||||| |||| ||||    
T  20058139 aaaatcctcaaggacagtgactatgtcacgcctcaggttacataa 20058095  T

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Target: scaffold0028 (Bit Score: 37; Significance: 0.000000000008; HSPs: 2)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 228 - 272
Target Start/End: Original strand, 110202 - 110246
Alignment:
Q  228 aaaatccttaaggacagtgactatgtcaagcctcatgttagataa 272  Q
    |||||||| ||||||||||||||||||| ||||||||||||||||    
T  110202 aaaatcctcaaggacagtgactatgtcacgcctcatgttagataa 110246  T

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Target: scaffold0028; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 228 - 272
Target Start/End: Original strand, 127781 - 127825
Alignment:
Q  228 aaaatccttaaggacagtgactatgtcaagcctcatgttagataa 272  Q
    |||||||| ||||||||||||||||||| |||||| |||||||||    
T  127781 aaaatcctcaaggacagtgactatgtcacgcctcaggttagataa 127825  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 229 - 291
Target Start/End: Complemental strand, 49387641 - 49387579
Alignment:
Q  229 aaatccttaaggacagtgactatgtcaagcctcatgttagataatggtttattgttttgcagg 291  Q
    |||||||||||| |||||||| ||||| ||||||||||| ||||||| ||| ||||| |||||    
T  49387641 aaatccttaaggccagtgactttgtcacgcctcatgttatataatggattactgtttggcagg 49387579  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 229 - 267
Target Start/End: Original strand, 43254197 - 43254235
Alignment:
Q  229 aaatccttaaggacagtgactatgtcaagcctcatgtta 267  Q
    ||||||||||||||||||||| ||||| |||||||||||    
T  43254197 aaatccttaaggacagtgactttgtcacgcctcatgtta 43254235  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 187 - 220
Target Start/End: Original strand, 918390 - 918423
Alignment:
Q  187 tgttttctcttaggatttattgtgggtttgagtg 220  Q
    ||||||||||||||||| ||||||||||||||||    
T  918390 tgttttctcttaggattcattgtgggtttgagtg 918423  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 171 - 228
Target Start/End: Complemental strand, 3021938 - 3021881
Alignment:
Q  171 caaaaacttgttttcatgttttctcttaggatttattgtgggtttgagtgacttgaaa 228  Q
    ||||||||| ||||  |||||||| |||| ||| |||||||||||||| |||||||||    
T  3021938 caaaaactttttttattgttttctattagcattcattgtgggtttgagggacttgaaa 3021881  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 70 - 122
Target Start/End: Complemental strand, 1050712 - 1050660
Alignment:
Q  70 aacttatacactaagtgttgagtttctttgggtgagattcttggattgggaaa 122  Q
    ||||||||  ||||| ||||||| || ||||||||||||||||| ||||||||    
T  1050712 aacttataggctaagagttgagtgtcattgggtgagattcttgggttgggaaa 1050660  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 229 - 285
Target Start/End: Complemental strand, 10941460 - 10941405
Alignment:
Q  229 aaatccttaaggacagtgactatgtcaagcctcatgttagataatggtttattgttt 285  Q
    ||||||||||||||||||||| ||||| ||||||||||| ||||||| ||| |||||    
T  10941460 aaatccttaaggacagtgact-tgtcacgcctcatgttatataatggattactgttt 10941405  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 229 - 285
Target Start/End: Complemental strand, 10947329 - 10947274
Alignment:
Q  229 aaatccttaaggacagtgactatgtcaagcctcatgttagataatggtttattgttt 285  Q
    ||||||||||||||||||||| ||||| ||||||||||| ||||||| ||| |||||    
T  10947329 aaatccttaaggacagtgact-tgtcacgcctcatgttatataatggattactgttt 10947274  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 228 - 272
Target Start/End: Original strand, 21189483 - 21189527
Alignment:
Q  228 aaaatccttaaggacagtgactatgtcaagcctcatgttagataa 272  Q
    |||||||| ||||||||||||||||||| |||||| |||||||||    
T  21189483 aaaatcctcaaggacagtgactatgtcacgcctcaggttagataa 21189527  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 228 - 291
Target Start/End: Complemental strand, 14433635 - 14433572
Alignment:
Q  228 aaaatccttaaggacagtgactatgtcaagcctcatgttagataatggtttattgttttgcagg 291  Q
    |||||||  ||||||||||||||||||| |||||| |||| ||||  || ||||||||||||||    
T  14433635 aaaatccacaaggacagtgactatgtcacgcctcaggttacataacagtgtattgttttgcagg 14433572  T

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Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 187 - 230
Target Start/End: Complemental strand, 44732137 - 44732094
Alignment:
Q  187 tgttttctcttaggatttattgtgggtttgagtgacttgaaaaa 230  Q
    ||||||||||||||||| ||||||||||||||||| || |||||    
T  44732137 tgttttctcttaggattcattgtgggtttgagtgatttaaaaaa 44732094  T

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Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 229 - 275
Target Start/End: Complemental strand, 10938099 - 10938054
Alignment:
Q  229 aaatccttaaggacagtgactatgtcaagcctcatgttagataatgg 275  Q
    ||||||||||||||||||||| ||||| ||||||||||| |||||||    
T  10938099 aaatccttaaggacagtgact-tgtcacgcctcatgttatataatgg 10938054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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