View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2913_low_3 (Length: 259)
Name: NF2913_low_3
Description: NF2913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2913_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 16 - 243
Target Start/End: Complemental strand, 43673574 - 43673347
Alignment:
| Q |
16 |
actttttattggtatttctggtttgattttttgtccatgttgtgtgaggatataaaaagcctagaaggttaataaatgtgcaagcagaattaatggaaaa |
115 |
Q |
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| T |
43673574 |
actttttattggtatttctggtttgattttttgtccatgttgtgtgaggatataaaaagcctagaaggttaagaaatgtgcaagcagaattaatggaaaa |
43673475 |
T |
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| Q |
116 |
aagaaatgttattttcaatgattataatatttgtgtatatgaatagaaagaacaatgaatttcagatcatggcgaacatttaaagactgctgaaagaatg |
215 |
Q |
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| T |
43673474 |
aagaaatgttattttcaatgattataatatttgtgtatatgaatagaaagaacaatgaatttcagatcatggcgaacatttaaagactgctgaaagaatg |
43673375 |
T |
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| Q |
216 |
tgaattaagttccttcttctcaggatct |
243 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
43673374 |
tgaattaagttccttcttctcaggatct |
43673347 |
T |
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