View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2913_low_4 (Length: 250)
Name: NF2913_low_4
Description: NF2913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2913_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 139; Significance: 8e-73; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 102 - 240
Target Start/End: Original strand, 37577740 - 37577878
Alignment:
| Q |
102 |
gagcatctttgtctttgtgtactcaacggagcatagaaagaacagaaagcagaacaaagcaaagagaagatggagggtgctacaactgcaactgcaatca |
201 |
Q |
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| T |
37577740 |
gagcatctttgtctttgtgtactcaacggagcatagaaagaacagaaagcagaacaaagcaaagagaagatggagggtgctacaactgcaactgcaatca |
37577839 |
T |
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| Q |
202 |
tgaaaatcaacggtggattattaggaaggattatctgtg |
240 |
Q |
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| T |
37577840 |
tgaaaatcaacggtggattattaggaaggattatctgtg |
37577878 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 102 - 240
Target Start/End: Original strand, 37584999 - 37585137
Alignment:
| Q |
102 |
gagcatctttgtctttgtgtactcaacggagcatagaaagaacagaaagcagaacaaagcaaagagaagatggagggtgctacaactgcaactgcaatca |
201 |
Q |
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| T |
37584999 |
gagcatctttgtctttgtgtactcaacggagcatagaaagaacagaaagcagaacaaagcaaagagaagatggagggtgctacaactgcaactgcaatca |
37585098 |
T |
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| Q |
202 |
tgaaaatcaacggtggattattaggaaggattatctgtg |
240 |
Q |
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| T |
37585099 |
tgaaaatcaacggtggattattaggaaggattatctgtg |
37585137 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 167 - 240
Target Start/End: Original strand, 37583928 - 37584001
Alignment:
| Q |
167 |
gaagatggagggtgctacaactgcaactgcaatcatgaaaatcaacggtggattattaggaaggattatctgtg |
240 |
Q |
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| T |
37583928 |
gaagatggagggtgctacaactgcaactgcaatcatgaaaatcaacggtggattattaggaaggattatctgtg |
37584001 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 27 - 68
Target Start/End: Original strand, 37583850 - 37583891
Alignment:
| Q |
27 |
tatctaaacgtggaatcacggtctatatataacagtatctag |
68 |
Q |
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| T |
37583850 |
tatctaaacgtggaatctcagtctatatataatagtatctag |
37583891 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 156 - 218
Target Start/End: Complemental strand, 3104060 - 3103998
Alignment:
| Q |
156 |
caaagcaaagagaagatggagggtgctacaactgcaactgcaatcatgaaaatcaacggtgga |
218 |
Q |
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| T |
3104060 |
caaaacaaagagaagatgaatggtggtacaactccagctgcaatcatgaaaatcaacggtgga |
3103998 |
T |
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