View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2915_high_1 (Length: 415)

Name: NF2915_high_1
Description: NF2915
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2915_high_1
NF2915_high_1
[»] chr1 (1 HSPs)
chr1 (90-380)||(43224045-43224338)


Alignment Details
Target: chr1 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 90 - 380
Target Start/End: Complemental strand, 43224338 - 43224045
Alignment:
Q  90 gagattaatggtaatgccattcataaaactctatatataccctacatgataaattatttttctttcttttattctattcggtatatttactgcattacga 189  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  43224338 gagattaatggtaatgccattcataaaactctatatataccctatatgataaattatttttctttcttttattctattcggtatatttactgcattaaga 43224239  T
Q  190 aaattctataaaaactccctacattaacacagaaaatttggtgagaattgtactattttcgaaggatagtaactctctatactagcagagtctaagtctt 289  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43224238 aaattctataaaaactccctacattaacacagaaaatttggtgagaattgtactattttcgaaggatagtaactctctatactagcagagtctaagtctt 43224139  T
Q  290 aggtaagttttctaatctctatattgttgcttgcacctttcattatgcttcttcttcnnnnnnn---cttgctttgatgtgccttccatttccc 380  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||          |||||||||||||||||||||||||||    
T  43224138 aggtaagttttctaatctctatattgttgcttgcacctttcattatgcttcttcttcttctttttttcttgctttgatgtgccttccatttccc 43224045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University