View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2915_high_2 (Length: 232)

Name: NF2915_high_2
Description: NF2915
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2915_high_2
NF2915_high_2
[»] chr3 (22 HSPs)
chr3 (14-232)||(7502074-7502292)
chr3 (106-232)||(53785626-53785754)
chr3 (49-189)||(46940880-46941020)
chr3 (50-222)||(32546656-32546830)
chr3 (50-203)||(44198628-44198783)
chr3 (48-232)||(39583291-39583477)
chr3 (102-227)||(13582423-13582550)
chr3 (97-220)||(38145964-38146089)
chr3 (97-207)||(52411978-52412090)
chr3 (66-203)||(26856853-26856992)
chr3 (143-232)||(52741574-52741665)
chr3 (55-222)||(3443384-3443553)
chr3 (102-227)||(37992246-37992372)
chr3 (97-232)||(38978861-38978998)
chr3 (50-232)||(26772619-26772803)
chr3 (53-123)||(22799885-22799954)
chr3 (49-176)||(4472922-4473049)
chr3 (102-168)||(4669791-4669857)
chr3 (103-221)||(25324943-25325063)
chr3 (48-187)||(3643012-3643149)
chr3 (50-199)||(4763888-4764038)
chr3 (102-223)||(37133070-37133193)
[»] chr7 (22 HSPs)
chr7 (103-232)||(43856788-43856919)
chr7 (97-232)||(9281193-9281335)
chr7 (97-232)||(9292164-9292306)
chr7 (49-162)||(2904241-2904353)
chr7 (102-232)||(19277204-19277338)
chr7 (103-223)||(41117841-41117963)
chr7 (103-232)||(27521385-27521516)
chr7 (62-223)||(982822-982985)
chr7 (102-232)||(36558930-36559061)
chr7 (50-221)||(21326911-21327084)
chr7 (102-232)||(48539094-48539226)
chr7 (55-219)||(5825139-5825305)
chr7 (139-232)||(10905068-10905163)
chr7 (62-223)||(22197860-22198022)
chr7 (62-223)||(22239799-22239961)
chr7 (50-202)||(28517379-28517533)
chr7 (102-223)||(42295255-42295378)
chr7 (103-177)||(34772696-34772770)
chr7 (102-166)||(27027760-27027824)
chr7 (130-226)||(4501200-4501298)
chr7 (136-189)||(26770068-26770121)
chr7 (102-232)||(45613904-45614036)
[»] chr8 (18 HSPs)
chr8 (55-220)||(38815160-38815327)
chr8 (50-227)||(18804474-18804652)
chr8 (53-232)||(25021876-25022057)
chr8 (50-232)||(22589399-22589582)
chr8 (130-232)||(24124969-24125073)
chr8 (102-220)||(3187883-3188002)
chr8 (102-220)||(28196105-28196225)
chr8 (102-165)||(6618198-6618261)
chr8 (130-232)||(3821165-3821269)
chr8 (49-161)||(24320197-24320309)
chr8 (114-222)||(6592501-6592610)
chr8 (139-231)||(39671235-39671329)
chr8 (123-174)||(42922225-42922276)
chr8 (158-221)||(40223476-40223541)
chr8 (48-226)||(3825495-3825674)
chr8 (48-77)||(31150329-31150358)
chr8 (134-232)||(36004067-36004167)
chr8 (157-222)||(35740058-35740125)
[»] chr6 (12 HSPs)
chr6 (48-227)||(24016194-24016377)
chr6 (102-203)||(32115631-32115734)
chr6 (54-213)||(28009068-28009229)
chr6 (104-220)||(4165996-4166114)
chr6 (104-220)||(4206670-4206788)
chr6 (104-220)||(29338153-29338271)
chr6 (96-181)||(3137362-3137447)
chr6 (49-166)||(34168781-34168897)
chr6 (130-232)||(959522-959625)
chr6 (130-189)||(3714858-3714917)
chr6 (50-205)||(33220800-33220957)
chr6 (102-220)||(34304409-34304529)
[»] chr2 (13 HSPs)
chr2 (50-203)||(13413212-13413367)
chr2 (103-205)||(16351933-16352037)
chr2 (50-222)||(17344499-17344673)
chr2 (102-189)||(3262249-3262336)
chr2 (113-220)||(41867982-41868091)
chr2 (139-220)||(5532370-5532453)
chr2 (50-232)||(4413128-4413312)
chr2 (48-123)||(41702131-41702206)
chr2 (50-232)||(18745016-18745200)
chr2 (146-232)||(20142787-20142875)
chr2 (48-123)||(30602348-30602423)
chr2 (50-123)||(3208417-3208490)
chr2 (139-205)||(29808025-29808093)
[»] chr4 (25 HSPs)
chr4 (58-205)||(4419133-4419281)
chr4 (50-202)||(53619447-53619601)
chr4 (49-187)||(45661551-45661689)
chr4 (113-232)||(56462168-56462289)
chr4 (102-188)||(23242813-23242899)
chr4 (50-232)||(53098282-53098466)
chr4 (101-205)||(54190940-54191046)
chr4 (50-232)||(3329857-3330041)
chr4 (130-232)||(25504236-25504340)
chr4 (50-223)||(600763-600938)
chr4 (48-227)||(26521348-26521528)
chr4 (102-222)||(7536643-7536765)
chr4 (50-221)||(34107769-34107942)
chr4 (157-203)||(50464387-50464435)
chr4 (52-168)||(50442607-50442723)
chr4 (55-134)||(12053333-12053412)
chr4 (130-218)||(16955401-16955491)
chr4 (99-202)||(23255622-23255728)
chr4 (50-189)||(30940839-30940978)
chr4 (104-220)||(38535643-38535760)
chr4 (55-202)||(39001263-39001412)
chr4 (48-90)||(41945018-41945060)
chr4 (103-205)||(55933549-55933653)
chr4 (50-182)||(50001040-50001172)
chr4 (102-232)||(53170425-53170558)
[»] scaffold0009 (1 HSPs)
scaffold0009 (50-232)||(102967-103151)
[»] chr5 (11 HSPs)
chr5 (102-232)||(37873700-37873832)
chr5 (50-203)||(33692146-33692298)
chr5 (102-232)||(42921611-42921742)
chr5 (50-166)||(35310309-35310425)
chr5 (153-197)||(3114239-3114283)
chr5 (103-216)||(22188733-22188848)
chr5 (103-221)||(32269870-32269990)
chr5 (50-203)||(13167001-13167156)
chr5 (186-232)||(43129533-43129579)
chr5 (103-173)||(43349974-43350044)
chr5 (49-89)||(35455834-35455874)
[»] chr1 (15 HSPs)
chr1 (130-227)||(38731550-38731649)
chr1 (49-167)||(30688417-30688535)
chr1 (103-220)||(34644480-34644599)
chr1 (104-232)||(50314686-50314815)
chr1 (96-223)||(2898609-2898738)
chr1 (139-222)||(21472953-21473038)
chr1 (159-221)||(4862062-4862126)
chr1 (50-232)||(24177573-24177757)
chr1 (157-232)||(29169855-29169932)
chr1 (50-232)||(22346756-22346940)
chr1 (48-124)||(18802914-18802989)
chr1 (102-220)||(2764392-2764512)
chr1 (62-195)||(11128355-11128488)
chr1 (150-232)||(20259859-20259943)
chr1 (48-77)||(50063807-50063836)
[»] scaffold0148 (1 HSPs)
scaffold0148 (50-232)||(33111-33295)
[»] scaffold0490 (1 HSPs)
scaffold0490 (139-222)||(6284-6369)
[»] scaffold0470 (1 HSPs)
scaffold0470 (102-165)||(7516-7579)
[»] scaffold0186 (1 HSPs)
scaffold0186 (156-220)||(10328-10393)


Alignment Details
Target: chr3 (Bit Score: 179; Significance: 9e-97; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 179; E-Value: 9e-97
Query Start/End: Original strand, 14 - 232
Target Start/End: Complemental strand, 7502292 - 7502074
Alignment:
Q  14 caaacatgagcaattacagaaagaaagcactaccggattaattacacatgaatagaagacaagcaagcaacaagctgagtcactaagactttttggatag 113  Q
    |||||||||||||||||||||||||||||||| | |||||||||||||||||||||| ||||||||||||||||||||||||||| | ||||||||||||    
T  7502292 caaacatgagcaattacagaaagaaagcactaactgattaattacacatgaatagaatacaagcaagcaacaagctgagtcactaggtctttttggatag 7502193  T
Q  114 caaaaccaattatcgaaaacataatattcatggacctatgagtcatgacattgttgtgcatgaccctttaaactctgtagaaggtcaacaacatttggtg 213  Q
    ||||| ||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||    
T  7502192 caaaatcaattatcgtaaacataatattcatggatctatgagtcatgacattgttgtgcatgaccctttaaactctgtagaaggtcaacaacctctggtg 7502093  T
Q  214 ctaggaaaccaaaaatgtc 232  Q
    |||||||||||||||||||    
T  7502092 ctaggaaaccaaaaatgtc 7502074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 106 - 232
Target Start/End: Original strand, 53785626 - 53785754
Alignment:
Q  106 ttggatagcaaaaccaattatcgaaaacataatattcatggacctatgagtcatgacattgttgtgcatgaccctttaaactc--tgtagaaggtcaaca 203  Q
    |||||| |||||||||||  ||| |||||||| ||||||||||||| ||| |||||||||| | ||||||||| ||| |||||  |||||||||||||||    
T  53785626 ttggatggcaaaaccaatcctcgtaaacataacattcatggacctaggagacatgacattgctatgcatgaccttttgaactctatgtagaaggtcaaca 53785725  T
Q  204 acatttggtgctaggaaaccaaaaatgtc 232  Q
    || | ||||||||||||||| ||| ||||    
T  53785726 acctctggtgctaggaaaccgaaagtgtc 53785754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 49 - 189
Target Start/End: Complemental strand, 46941020 - 46940880
Alignment:
Q  49 gattaattacacatgaatagaagacaagcaagcaacaagctgagtcactaagactttttggatagcaaaaccaattatcgaaaacataatattcatggac 148  Q
    |||||||||||||||||||||||  || || |||||||| ||   | ||| | ||||||||||| ||||| ||||| ||| ||||| || ||||||| ||    
T  46941020 gattaattacacatgaatagaaggtaaacaggcaacaagttgcaccgctaggtctttttggataacaaaatcaattttcgtaaacacaacattcatgaac 46940921  T
Q  149 ctatgagtcatgacattgttgtgcatgaccctttaaactct 189  Q
    ||||||||||||||||||| |||||||| ||||| ||||||    
T  46940920 ctatgagtcatgacattgtcgtgcatgatcctttgaactct 46940880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 50 - 222
Target Start/End: Original strand, 32546656 - 32546830
Alignment:
Q  50 attaattacacatgaatagaagacaagcaagcaacaagctgagtcactaagactttttggatagcaaaaccaattatcgaaaacataatattcatggacc 149  Q
    |||| |||||| |||||||||| |||||  ||||||||||| | | |||   |||||||||| |||||||||||  |||  |||| || |||||||||||    
T  32546656 attatttacacttgaatagaaggcaagcgggcaacaagctgcgccgctagacctttttggatggcaaaaccaatcctcgtgaacacaacattcatggacc 32546755  T
Q  150 tatgagtcatgacattgttgtgcatgaccctttaaactc--tgtagaaggtcaacaacatttggtgctaggaaac 222  Q
    || ||| |||||||||  | ||||||||  ||| |||||  ||||||||||||||| | ||||||||||||||||    
T  32546756 taggagacatgacattactatgcatgactttttgaactctatgtagaaggtcaacagcctttggtgctaggaaac 32546830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 50 - 203
Target Start/End: Original strand, 44198628 - 44198783
Alignment:
Q  50 attaattacacatgaatagaagacaagcaagcaacaagctgagtcactaagactttttggatagcaaaaccaattatcgaaaacataatattcatggacc 149  Q
    |||| |||||| |||||||||| |||||   |||||||||| ||| || |  |||||||||| |||||| ||||||||| ||||| || |||||||||||    
T  44198628 attatttacacttgaatagaaggcaagcggacaacaagctgtgtcgctcaacctttttggatggcaaaatcaattatcgcaaacacaacattcatggacc 44198727  T
Q  150 tatgagtcatgacattgttgtgcatgaccctttaaactc--tgtagaaggtcaaca 203  Q
    || ||| |||||||||| | ||||| ||| | | |||||  |||||||||||||||    
T  44198728 taggagacatgacattgctatgcataaccttctgaactctatgtagaaggtcaaca 44198783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 48 - 232
Target Start/End: Complemental strand, 39583477 - 39583291
Alignment:
Q  48 ggattaattacacatgaatagaagacaagcaagcaacaagctgagtcactaagactttttggatagcaaaaccaattatcgaaaacataatattcatgga 147  Q
    |||||| ||||||||||||||||  ||||||  ||||||| || | | |||   |||||||||| |||||| ||||  ||| |||||  | ||||||| |    
T  39583477 ggattacttacacatgaatagaaagcaagcagacaacaagttgcgccgctagacctttttggatggcaaaatcaatcctcgtaaacacgacattcatgaa 39583378  T
Q  148 cctatgagtcatgacattgttgtgcatgaccctttaaactc--tgtagaaggtcaacaacatttggtgctaggaaaccaaaaatgtc 232  Q
    |||| ||| |||||||||| | ||||||||||||| |||||  || |||||||||||||| | || |||||||||||| ||| ||||    
T  39583377 cctaggagacatgacattgctatgcatgaccctttgaactctatgcagaaggtcaacaacctatgatgctaggaaaccgaaagtgtc 39583291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 102 - 227
Target Start/End: Original strand, 13582423 - 13582550
Alignment:
Q  102 ctttttggatagcaaaaccaattatcgaaaacataatattcatggacctatgagtcatgacattgttgtgcatgaccctttaaa--ctctgtagaaggtc 199  Q
    |||||||||| || ||| ||||  ||| ||||| || |||||||| |||| ||| |||||||||||| ||||||||| ||| ||  ||||||||||||||    
T  13582423 ctttttggatggctaaatcaatcttcgtaaacacaacattcatggtcctaggagacatgacattgttatgcatgaccttttgaactctctgtagaaggtc 13582522  T
Q  200 aacaacatttggtgctaggaaaccaaaa 227  Q
    |||||   |||||||||||||| |||||    
T  13582523 aacaattgttggtgctaggaaatcaaaa 13582550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 97 - 220
Target Start/End: Original strand, 38145964 - 38146089
Alignment:
Q  97 taagactttttggatagcaaaaccaattatcgaaaacataatattcatggacctatgagtcatgacattgttgtgcatgaccctttaaactct--gtaga 194  Q
    |||| |||||| |||  ||||| |||| |||| ||||| ||  |||||||||||| ||| |||||||||||| ||||||||||||| ||||||  |||||    
T  38145964 taagtctttttagatgacaaaatcaatcatcgtaaacacaacgttcatggacctaggagacatgacattgttatgcatgaccctttgaactctaagtaga 38146063  T
Q  195 aggtcaacaacatttggtgctaggaa 220  Q
    | || |||||| | ||||||||||||    
T  38146064 atgtaaacaacctctggtgctaggaa 38146089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 97 - 207
Target Start/End: Complemental strand, 52412090 - 52411978
Alignment:
Q  97 taagactttttggatagcaaaaccaattatcgaaaacataatattcatggacctatgagtcatgacattgttgtgcatgaccctttaaactc--tgtaga 194  Q
    |||| |||||||||| |||||| |||| || | ||||| |||||| ||||  ||| ||| |||||||||||| ||||||||||||| |||||  ||||||    
T  52412090 taagcctttttggatggcaaaatcaatcattgtaaacacaatatttatgggtctaggagacatgacattgttatgcatgaccctttgaactctatgtaga 52411991  T
Q  195 aggtcaacaacat 207  Q
    |||||||| ||||    
T  52411990 aggtcaacgacat 52411978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 66 - 203
Target Start/End: Complemental strand, 26856992 - 26856853
Alignment:
Q  66 tagaagacaagcaagcaacaagctgagtcactaagactttttggatagcaaaaccaattatcgaaaacataatattcatggacctatgagtcatgacatt 165  Q
    |||||| ||||| |||||||||||| | | ||| | |||||||||| | |||||||||  ||| || || || ||||||  ||||| ||| |||||||||    
T  26856992 tagaaggcaagcgagcaacaagctgcgccgctaggcctttttggatggtaaaaccaatcctcgcaagcacaacattcataaacctaggagacatgacatt 26856893  T
Q  166 gttgtgcatgaccctttaaactc--tgtagaaggtcaaca 203  Q
    | | ||||||||||||| |||||  |||||||||||||||    
T  26856892 gctatgcatgaccctttgaactctatgtagaaggtcaaca 26856853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 143 - 232
Target Start/End: Complemental strand, 52741665 - 52741574
Alignment:
Q  143 atggacctatgagtcatgacattgttgtgcatgaccctttaaactct--gtagaaggtcaacaacatttggtgctaggaaaccaaaaatgtc 232  Q
    ||||| ||| ||| |||||||||| | ||||||||| ||| ||||||  |||||||||||||||| | ||||||||||||||||||| ||||    
T  52741665 atggatctaggagacatgacattgctatgcatgaccttttgaactctatgtagaaggtcaacaacctctggtgctaggaaaccaaaagtgtc 52741574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 55 - 222
Target Start/End: Complemental strand, 3443553 - 3443384
Alignment:
Q  55 ttacacatgaatagaagacaagcaagcaacaagctgagtcactaagactttttggatagcaaaaccaattatcgaaaacataatattcatggacctatga 154  Q
    |||||||| ||||||| |||||||  | ||||| || |||| || | |||| ||||| ||||||||||| |||| ||||| || |||||| ||  || ||    
T  3443553 ttacacattaatagaaaacaagcagacgacaaggtgtgtcattaggtctttgtggatggcaaaaccaatcatcgtaaacacaacattcatagatttagga 3443454  T
Q  155 gtcatgacattgttgtgcatgaccctttaaactc--tgtagaaggtcaacaacatttggtgctaggaaac 222  Q
    | || ||||||  |  |||||||||||| |||||  ||||||||||||||||| | | ||||||||||||    
T  3443453 gacaagacattcctacgcatgaccctttgaactctatgtagaaggtcaacaacctctagtgctaggaaac 3443384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 102 - 227
Target Start/End: Original strand, 37992246 - 37992372
Alignment:
Q  102 ctttttggatagcaaaaccaattatcgaaaacataatattcatggacctatgagtcatgacattgttgtgcatgaccctttaa-actctgtagaaggtca 200  Q
    ||||||||||   |||||||||  ||||||||| || ||||||| || || |||||||||||||  |||||||||||||| ||  || ||||||||||||    
T  37992246 ctttttggatgataaaaccaatcttcgaaaacacaacattcatgcacgtacgagtcatgacattactgtgcatgacccttgaactctttgtagaaggtca 37992345  T
Q  201 acaacatttggtgctaggaaaccaaaa 227  Q
    ||||| | | |||||| ||| ||||||    
T  37992346 acaacctctagtgctatgaagccaaaa 37992372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 97 - 232
Target Start/End: Complemental strand, 38978998 - 38978861
Alignment:
Q  97 taagactttttggatagcaaaaccaattatcgaaaacataatattcatggacctatgagtcatgacattgttgtgcatgaccctttaaac--tctgtaga 194  Q
    |||| |||||||||| ||||||| |||| ||| ||||| || ||| ||  ||||||||| |||||||||||| ||||| ||| ||| |||  | ||||||    
T  38978998 taagcctttttggatggcaaaactaattttcgtaaacacaacattgataaacctatgagacatgacattgttatgcatcaccttttgaactatatgtaga 38978899  T
Q  195 aggtcaacaacatttggtgctaggaaaccaaaaatgtc 232  Q
    ||||||||  | |  |||||||||||||||||| ||||    
T  38978898 aggtcaacggcctcaggtgctaggaaaccaaaagtgtc 38978861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 50 - 232
Target Start/End: Original strand, 26772619 - 26772803
Alignment:
Q  50 attaattacacatgaatagaagacaagcaagcaacaagctgagtcactaagactttttggatagcaaaaccaattatcgaaaacataatattcatggacc 149  Q
    |||| |||||||||||||| || |||||  ||||||||||| | | |||   |||||||||| |||||| ||||  ||| ||||| || |||||||||||    
T  26772619 attacttacacatgaataggaggcaagcgggcaacaagctgcgccgctagacctttttggatggcaaaatcaatcctcgtaaacacaacattcatggacc 26772718  T
Q  150 tatgagtcatgacattgttgtgcatgaccctttaaactc--tgtagaaggtcaacaacatttggtgctaggaaaccaaaaatgtc 232  Q
    || ||| ||| |||||||| ||||| | |||||  ||||  | ||||||||||||  | | || ||||||||| |||||| ||||    
T  26772719 taggagacataacattgttatgcataatcctttgtactctatatagaaggtcaactgcctctgatgctaggaagccaaaagtgtc 26772803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 53 - 123
Target Start/End: Original strand, 22799885 - 22799954
Alignment:
Q  53 aattacacatgaatagaagacaagcaagcaacaagctgagtcactaagactttttggatagcaaaaccaat 123  Q
    ||||||||||||||  ||||||||| || ||||||||| | ||||||| |||||| |||||||||||||||    
T  22799885 aattacacatgaatgaaagacaagcgaggaacaagctgtgccactaagccttttt-gatagcaaaaccaat 22799954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 49 - 176
Target Start/End: Original strand, 4472922 - 4473049
Alignment:
Q  49 gattaattacacatgaatagaagacaagcaagcaacaagctgagtcactaagacttttt-ggatagcaaaaccaattatcgaaaacataatattcatgga 147  Q
    ||||| |||||||||||||||||||||||    ||||||||   ||| || |||||||| ||||  ||||||||||| ||| ||||| ||||||||| ||    
T  4472922 gattacttacacatgaatagaagacaagcggataacaagctatatcatta-gacttttttggatgacaaaaccaattctcgtaaacacaatattcataga 4473020  T
Q  148 cctatgagtcatgacattgttgtgcatga 176  Q
    |||| ||| ||||| |||| | |||||||    
T  4473021 cctaggagacatgaaattgctatgcatga 4473049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 102 - 168
Target Start/End: Complemental strand, 4669857 - 4669791
Alignment:
Q  102 ctttttggatagcaaaaccaattatcgaaaacataatattcatggacctatgagtcatgacattgtt 168  Q
    ||||||||||| ||||| |||| |||| ||||| || ||||||||||| | ||| ||||||||||||    
T  4669857 ctttttggataacaaaatcaatcatcgtaaacacaacattcatggaccaaggagacatgacattgtt 4669791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 103 - 221
Target Start/End: Original strand, 25324943 - 25325063
Alignment:
Q  103 tttttggatagcaaaaccaattatcgaaaacataatattcatggacctatgagtcatgacattgttgtgcatgaccctttaaactc--tgtagaaggtca 200  Q
    ||||||||| |||||| |||| |||| || || ||||||||||||  || ||  | |||||||| | ||||||| | ||| |||||  ||||||||||||    
T  25324943 tttttggatggcaaaagcaatcatcgtaagcacaatattcatggatttaggaaacttgacattgctatgcatgatcatttgaactctatgtagaaggtca 25325042  T
Q  201 acaacatttggtgctaggaaa 221  Q
    ||||  | |||||||||||||    
T  25325043 acaatctatggtgctaggaaa 25325063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 48 - 187
Target Start/End: Original strand, 3643012 - 3643149
Alignment:
Q  48 ggattaattacacatgaatagaagacaagcaagcaacaagctgagtcactaagactttttggatagcaaaaccaattatcgaaaacataatattcatgga 147  Q
    ||||||||||||||  |||||||| |||||  |||| |||||| |||  || | ||||| ||||  ||||| |||| |||  ||||| || |||||||||    
T  3643012 ggattaattacacaataatagaaggcaagcgggcaataagctgcgtcgttaggccttttcggatgacaaaatcaatcatc--aaacacaacattcatgga 3643109  T
Q  148 cctatgagtcatgacattgttgtgcatgaccctttaaact 187  Q
    ||||  |  |||||||||||| ||||||| ||||| ||||    
T  3643110 cctaaaaaacatgacattgttatgcatgatcctttgaact 3643149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 50 - 199
Target Start/End: Complemental strand, 4764038 - 4763888
Alignment:
Q  50 attaattacacatgaatagaagacaagcaagcaacaagctgagtcactaagactttttggatagcaaaaccaattatcgaaaacataatattcatggacc 149  Q
    |||| |||||| |||||||||| |||||  |||||||| || | ||| ||| |||||||||| ||||  | |||  ||| ||||| || |||||||||||    
T  4764038 attatttacacttgaatagaaggcaagcgggcaacaagttgcgccaccaagcctttttggatggcaattctaatcctcgtaaacacaacattcatggacc 4763939  T
Q  150 tatgagtcatgacattgttgtgcatgaccctttaaactc--tgtagaaggtc 199  Q
     | ||| |||||||||| | ||||| ||| ||| |||||  |||||||||||    
T  4763938 -aggagacatgacattgctatgcataaccttttgaactctatgtagaaggtc 4763888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 102 - 223
Target Start/End: Complemental strand, 37133193 - 37133070
Alignment:
Q  102 ctttttggatagcaaaaccaattatcgaaaacataatattcatggacctatgagtcatgacattgttgtgcatgaccctttaaactct--gtagaaggtc 199  Q
    |||||||||| |||||||||||  |   ||||| || ||||||  || || ||| |||||||||| | ||||||||| ||  ||||||  ||||||||||    
T  37133193 ctttttggatcgcaaaaccaatccttataaacacaacattcattaacttaggagacatgacattgctatgcatgacctttagaactctatgtagaaggtc 37133094  T
Q  200 aacaacatttggtgctaggaaacc 223  Q
    |||||| | |||||||| ||||||    
T  37133093 aacaacctctggtgctaagaaacc 37133070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 85; Significance: 1e-40; HSPs: 22)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 103 - 232
Target Start/End: Original strand, 43856788 - 43856919
Alignment:
Q  103 tttttggatagcaaaaccaattatcgaaaacataatattcatggacctatgagtcatgacattgttgtgcatgaccctttaaactc--tgtagaaggtca 200  Q
    |||||||||||||||| ||||| ||| |||||||| ||||||||||||| |||||||||||||||||||||||||||||| |||||  ||||||||||||    
T  43856788 tttttggatagcaaaatcaattctcgtaaacataacattcatggacctaggagtcatgacattgttgtgcatgaccctttgaactctatgtagaaggtca 43856887  T
Q  201 acaacatttggtgctaggaaaccaaaaatgtc 232  Q
    ||||| | ||||| ||||||||||||||||||    
T  43856888 acaacctctggtgttaggaaaccaaaaatgtc 43856919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 97 - 232
Target Start/End: Complemental strand, 9281335 - 9281193
Alignment:
Q  97 taagactttttggatagcaaaaccaattatcgaaaacataatattcatggacctatgagtcatgacattgttgtg-----catgaccctttaaactc--t 189  Q
    |||| |||||||||| |||||||||||| ||  ||||| || ||| |||||| || |||||||||||||||||||     ||||||||||| |||||  |    
T  9281335 taagcctttttggattgcaaaaccaattctcctaaacacaacattaatggacttaagagtcatgacattgttgtgctgtacatgaccctttgaactctat 9281236  T
Q  190 gtagaaggtcaacaacatttggtgctaggaaaccaaaaatgtc 232  Q
    |||||||||||||||||| |||||||||||| | |||||||||    
T  9281235 gtagaaggtcaacaacatctggtgctaggaagcaaaaaatgtc 9281193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 97 - 232
Target Start/End: Complemental strand, 9292306 - 9292164
Alignment:
Q  97 taagactttttggatagcaaaaccaattatcgaaaacataatattcatggacctatgagtcatgacattgttgtg-----catgaccctttaaactc--t 189  Q
    |||| |||||||||| |||||||||||| ||  ||||| || ||| |||||| || |||||||||||||||||||     ||||||||||| |||||  |    
T  9292306 taagcctttttggattgcaaaaccaattctcctaaacacaacattaatggacttaagagtcatgacattgttgtgctgtacatgaccctttgaactctat 9292207  T
Q  190 gtagaaggtcaacaacatttggtgctaggaaaccaaaaatgtc 232  Q
    |||||||||||||||||| |||||||||||| | |||||||||    
T  9292206 gtagaaggtcaacaacatctggtgctaggaagcaaaaaatgtc 9292164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 49 - 162
Target Start/End: Original strand, 2904241 - 2904353
Alignment:
Q  49 gattaattacacatgaatagaagacaagcaagcaacaagctgagtcactaagactttttggatagcaaaaccaattatcgaaaacataatattcatggac 148  Q
    ||||||||||||||||||||||||||  ||  |||||||||  | ||||||  ||||||||||||||||||||||||||| ||||| || |||||| |||    
T  2904241 gattaattacacatgaatagaagacatacagacaacaagctacgccactaac-ctttttggatagcaaaaccaattatcgtaaacacaacattcatagac 2904339  T
Q  149 ctatgagtcatgac 162  Q
    ||| ||||||||||    
T  2904340 ctaggagtcatgac 2904353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 102 - 232
Target Start/End: Original strand, 19277204 - 19277338
Alignment:
Q  102 ctttttggatagcaaaaccaattatcgaa--aacataatattcatggacctatgagtcatgacattgttgtgcatgaccctttaaactct--gtagaagg 197  Q
    |||||||||| |||||||||||| |||    |||| || ||||||||||||| ||| |||||||||| | ||||||||| ||| ||||||  ||||||||    
T  19277204 ctttttggatggcaaaaccaattttcgtgtgaacacaacattcatggacctaggagacatgacattgctatgcatgaccttttgaactctatgtagaagg 19277303  T
Q  198 tcaacaacatttggtgctaggaaaccaaaaatgtc 232  Q
    |||||||| | ||||||||||||||| ||| ||||    
T  19277304 tcaacaacctctggtgctaggaaaccgaaagtgtc 19277338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 103 - 223
Target Start/End: Complemental strand, 41117963 - 41117841
Alignment:
Q  103 tttttggatagcaaaaccaattatcgaaaacataatattcatggacctatgagtcatgacattgttgtgcatgaccctttaaactc--tgtagaaggtca 200  Q
    |||||||||||||||| |||| ||||  |||| || ||||||||||||| ||  |||||||||| | ||||||| | |||||||||  |||||||||| |    
T  41117963 tttttggatagcaaaatcaatcatcgtgaacacaacattcatggacctaggaaacatgacattgctatgcatgatcttttaaactctatgtagaaggtta 41117864  T
Q  201 acaacatttggtgctaggaaacc 223  Q
    ||||||| ||||| |||||||||    
T  41117863 acaacatctggtgttaggaaacc 41117841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 103 - 232
Target Start/End: Original strand, 27521385 - 27521516
Alignment:
Q  103 tttttggatagcaaaaccaattatcgaaaacataatattcatggacctatgagtcatgacattgttgtgcatgaccctttaaactct--gtagaaggtca 200  Q
    ||||| ||| |||||| ||||  ||| ||||| || |||||| ||| || ||| |||||||||||| ||||||||| ||| ||||||  |||||||||||    
T  27521385 tttttcgatggcaaaatcaatcctcgtaaacacaacattcatagacttaggagacatgacattgttatgcatgaccttttgaactctatgtagaaggtca 27521484  T
Q  201 acaacatttggtgctaggaaaccaaaaatgtc 232  Q
    ||||| | || |||||||||||||||| ||||    
T  27521485 acaacctctgatgctaggaaaccaaaagtgtc 27521516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 62 - 223
Target Start/End: Original strand, 982822 - 982985
Alignment:
Q  62 tgaatagaagacaagcaagcaacaagctgagtcactaagactttttggatagcaaaaccaattatcgaaaacataatattcatggacctatgagtcatga 161  Q
    |||||||||| ||| || ||||||||||| ||| |||   |||||||||| |||| ||||||  |||  |||| || |||||||||| ||  || |||||    
T  982822 tgaatagaaggcaaacaggcaacaagctgtgtcgctagacctttttggatggcaataccaatcctcgtgaacacaacattcatggacatagaagacatga 982921  T
Q  162 cattgttgtgcatgaccctttaaactc--tgtagaaggtcaacaacatttggtgctaggaaacc 223  Q
    ||||| | ||||||||| ||| |||||  ||||||||| ||||||| | ||||||||| |||||    
T  982922 cattgatatgcatgaccttttgaactctatgtagaaggccaacaacctctggtgctagaaaacc 982985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 102 - 232
Target Start/End: Complemental strand, 36559061 - 36558930
Alignment:
Q  102 ctttttggatagcaaaaccaattatcgaaaacataatattcatggacctatgagtcatgacattgttgtgcatgaccctttaa-actctgtagaaggtca 200  Q
    |||||| |||||||||| || | |||| ||||| || |||||||||||||| || ||||| |||  | ||||||||| |||||  || || |||| ||||    
T  36559061 ctttttagatagcaaaatcattcatcgtaaacacaacattcatggacctataagacatgatatttatatgcatgaccatttaactctatggagaaagtca 36558962  T
Q  201 acaacatttggtgctaggaaaccaaaaatgtc 232  Q
    || || ||||||||||| ||||||||||||||    
T  36558961 acgacttttggtgctagaaaaccaaaaatgtc 36558930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 50 - 221
Target Start/End: Complemental strand, 21327084 - 21326911
Alignment:
Q  50 attaattacacatgaatagaagacaagcaagcaacaagctgagtcactaagactttttggatagcaaaaccaattatcgaaaacataatattcatggacc 149  Q
    |||| |||||| |||||||||| ||||||  |||||||||| | |  ||   |||||||||| |||||| ||||  |||  |||| || |||||||||||    
T  21327084 attatttacacttgaatagaaggcaagcagacaacaagctgcgccgttagacctttttggatggcaaaatcaatcctcgtgaacacaacattcatggacc 21326985  T
Q  150 tatgagtcatgacattgttgtgcatgaccctttaaactc--tgtagaaggtcaacaacatttggtgctaggaaa 221  Q
    || ||| ||| |||||| | ||||||||| ||| |||||  |||| |||||||||| | | |||||||||||||    
T  21326984 taggagacataacattgctatgcatgaccttttgaactctatgtaaaaggtcaacagcctctggtgctaggaaa 21326911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 102 - 232
Target Start/End: Original strand, 48539094 - 48539226
Alignment:
Q  102 ctttttggatagcaaaaccaattatcgaaaacataatattcatggacctatgagtcatgacattgttgtgcatgaccctttaaactc--tgtagaaggtc 199  Q
    |||||||||| |||||||||||  ||| ||||| || ||||||||||||| ||| |||||||||| | ||||||||| |||  ||||  |||||| | ||    
T  48539094 ctttttggatggcaaaaccaatcctcgtaaacacaacattcatggacctaggagacatgacattgctatgcatgaccttttggactctatgtagacgatc 48539193  T
Q  200 aacaacatttggtgctaggaaaccaaaaatgtc 232  Q
    |||| | | ||||||||| ||||| ||| ||||    
T  48539194 aacagcctctggtgctagaaaaccgaaagtgtc 48539226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 55 - 219
Target Start/End: Original strand, 5825139 - 5825305
Alignment:
Q  55 ttacacatgaatagaagacaagcaagcaacaagctgagtcactaaga-ctttttggatagcaaaaccaattatcgaaaacataatattcatggacctatg 153  Q
    |||||||||||||| || |||||| | ||||||||| | |  ||||| |||||| ||| |||||||||||  ||| ||||| || || ||| |||||| |    
T  5825139 ttacacatgaataggaggcaagcaggtaacaagctgcg-ccgtaagacctttttcgatggcaaaaccaatcctcgtaaacacaacatccatagacctagg 5825237  T
Q  154 agtcatgacattgttgtgcatgaccctttaaactc--tgtagaaggtcaacaacatttggtgctagga 219  Q
    || ||| |||||| | ||||| |||||||  ||||  ||||||||||||||||| | |||||||||||    
T  5825238 agacataacattgctatgcataaccctttcgactctatgtagaaggtcaacaacctctggtgctagga 5825305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 139 - 232
Target Start/End: Original strand, 10905068 - 10905163
Alignment:
Q  139 attcatggacctatgagtcatgacattgttgtgcatgaccctttaaactc--tgtagaaggtcaacaacatttggtgctaggaaaccaaaaatgtc 232  Q
    ||||||||||||| ||| |||||||||||| |||||| | |||| |||||  |||||||||||||||   | |||||||||| |||||||| ||||    
T  10905068 attcatggacctaggagacatgacattgttatgcatggctctttgaactctatgtagaaggtcaacatactctggtgctaggcaaccaaaagtgtc 10905163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 62 - 223
Target Start/End: Original strand, 22197860 - 22198022
Alignment:
Q  62 tgaatagaagacaagcaagcaacaagctgagtcactaagactttttggatagcaaaaccaattatcgaaaacataatattcatggacctatgagtcatga 161  Q
    ||||||||||||||||  |||||||| ||   | | ||| ||||||||||  ||||| ||||||||| ||||| || |||||| |||||| ||| |||||    
T  22197860 tgaatagaagacaagcgggcaacaagttgcaccgccaagcctttttggatgacaaaatcaattatcgtaaacacaacattcattgacctaggagacatga 22197959  T
Q  162 cattgttgtgcatgaccctttaaactct--gtagaaggtcaacaacatttggtgctaggaaacc 223  Q
    | ||| | | ||| ||| ||| ||||||  |||||||||||||||| | || ||||||||||||    
T  22197960 cgttgctat-cataaccttttgaactctatgtagaaggtcaacaacctctgatgctaggaaacc 22198022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 62 - 223
Target Start/End: Complemental strand, 22239961 - 22239799
Alignment:
Q  62 tgaatagaagacaagcaagcaacaagctgagtcactaagactttttggatagcaaaaccaattatcgaaaacataatattcatggacctatgagtcatga 161  Q
    ||||||||||||||||  |||||||| ||   | | ||| ||||||||||  ||||| ||||||||| ||||| || |||||| |||||| ||| |||||    
T  22239961 tgaatagaagacaagcgggcaacaagttgcaccgccaagcctttttggatgacaaaatcaattatcgtaaacacaacattcattgacctaggagacatga 22239862  T
Q  162 cattgttgtgcatgaccctttaaactct--gtagaaggtcaacaacatttggtgctaggaaacc 223  Q
    | ||| | | ||| ||| ||| ||||||  |||||||||||||||| | || ||||||||||||    
T  22239861 cgttgctat-cataaccttttgaactctatgtagaaggtcaacaacctctgatgctaggaaacc 22239799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 50 - 202
Target Start/End: Complemental strand, 28517533 - 28517379
Alignment:
Q  50 attaattacacatgaatagaagacaagcaagcaacaagctgagtcactaagacttttt-ggatagcaaaaccaattatcgaaaacataatattcatggac 148  Q
    |||| |||||||||||||| || ||  |  ||||||||||| ||| ||| |||||||| |||| |||||||||||  ||| ||||| || ||||||||||    
T  28517533 attacttacacatgaataggaggcagacgggcaacaagctgtgtcgcta-gacttttttggatggcaaaaccaatcctcgtaaacacaacattcatggac 28517435  T
Q  149 ctatgagtcatgacattgttgtgcatgaccctttaaactc--tgtagaaggtcaac 202  Q
     || ||| ||| |||||||| ||||| |||||||  ||||  ||||||||||||||    
T  28517434 ttaggagacataacattgttatgcataaccctttggactctatgtagaaggtcaac 28517379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 102 - 223
Target Start/End: Complemental strand, 42295378 - 42295255
Alignment:
Q  102 ctttttggatagcaaaaccaattatcgaaaacataatattcatggacctatgagtcatgacattgttgtgcatgaccctttaaa--ctctgtagaaggtc 199  Q
    ||||||||||| |||||| ||| |||| ||||| || ||||||||||||| ||| ||||||| |||| |||||||   ||| ||  || |||||||||||    
T  42295378 ctttttggataacaaaactaatcatcgtaaacacaagattcatggacctaggagacatgacaatgttatgcatgatattttgaacgctatgtagaaggtc 42295279  T
Q  200 aacaacatttggtgctaggaaacc 223  Q
    ||||||   ||||| |||||||||    
T  42295278 aacaacccctggtgttaggaaacc 42295255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 103 - 177
Target Start/End: Original strand, 34772696 - 34772770
Alignment:
Q  103 tttttggatagcaaaaccaattatcgaaaacataatattcatggacctatgagtcatgacattgttgtgcatgac 177  Q
    |||||| || |||||||||||||||| ||||| ||||||||||||||||  |  |||||||||| | ||||||||    
T  34772696 tttttgaatggcaaaaccaattatcgtaaacacaatattcatggacctagaaaacatgacattgatatgcatgac 34772770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 102 - 166
Target Start/End: Complemental strand, 27027824 - 27027760
Alignment:
Q  102 ctttttggatagcaaaaccaattatcgaaaacataatattcatggacctatgagtcatgacattg 166  Q
    ||||||||||||||||||||||  |||  |||| || ||||||||||||| ||| ||||||||||    
T  27027824 ctttttggatagcaaaaccaatcctcgtgaacacaacattcatggacctaggagacatgacattg 27027760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 130 - 226
Target Start/End: Original strand, 4501200 - 4501298
Alignment:
Q  130 aaacataatattcatggacctatgagtcatgacattgttgtgcatgaccctttaaactct--gtagaaggtcaacaacatttggtgctaggaaaccaaa 226  Q
    ||||| || ||||||| | ||| ||| |||||||||| | ||||||| | ||| ||||||  |||||||||||||||| | ||||||||| ||||||||    
T  4501200 aaacacaacattcatgaatctaggagacatgacattgctatgcatgaacttttgaactctatgtagaaggtcaacaacctctggtgctagaaaaccaaa 4501298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 136 - 189
Target Start/End: Original strand, 26770068 - 26770121
Alignment:
Q  136 aatattcatggacctatgagtcatgacattgttgtgcatgaccctttaaactct 189  Q
    |||||| ||||||||| ||||||||| |||||||||||||| | ||| ||||||    
T  26770068 aatatttatggacctaagagtcatgatattgttgtgcatgatcttttgaactct 26770121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 102 - 232
Target Start/End: Complemental strand, 45614036 - 45613904
Alignment:
Q  102 ctttttggatagcaaaaccaattatcgaaaacataatattcatggacctatgagtcatgacattgttgtgcatgaccctttaaactc--tgtagaaggtc 199  Q
    ||||| |||| |||||||||||  ||| ||||| || ||||||||||||| |||   |||||||||| ||||||| | ||| |||||  |||||||||      
T  45614036 cttttcggatggcaaaaccaatcctcgtaaacacaacattcatggacctaggagatttgacattgttatgcatgaacttttgaactctatgtagaaggct 45613937  T
Q  200 aacaacatttggtgctaggaaaccaaaaatgtc 232  Q
    |||| | | ||||||| ||||||| ||| ||||    
T  45613936 aacagcctctggtgcttggaaaccgaaagtgtc 45613904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 69; Significance: 4e-31; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 55 - 220
Target Start/End: Original strand, 38815160 - 38815327
Alignment:
Q  55 ttacacatgaatagaagacaagcaagcaacaagctgagtcactaagactttttggatagcaaaaccaattatcgaaaacataatattcatggacctatga 154  Q
    ||||||||||||||||| |||||  ||||||||||| | | ||||| |||||||||| | |||||||||  ||| ||||| || ||||||||||||| ||    
T  38815160 ttacacatgaatagaaggcaagcgggcaacaagctgcgccgctaagcctttttggatggaaaaaccaatcctcgtaaacacaacattcatggacctagga 38815259  T
Q  155 gtcatgacattgttgtgcatgaccctttaaactc--tgtagaaggtcaacaacatttggtgctaggaa 220  Q
    | |||||||||| | ||||||||||||| |||||  ||||||||||||||| | | ||||||||||||    
T  38815260 gacatgacattgctatgcatgaccctttgaactctatgtagaaggtcaacaccctctggtgctaggaa 38815327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 50 - 227
Target Start/End: Original strand, 18804474 - 18804652
Alignment:
Q  50 attaattacacatgaatagaagacaagcaagcaacaagctgagtcactaagactttttggatagcaaaaccaattatcgaaaacataatattcatggacc 149  Q
    |||| |||||| |||||||||| |||||| ||||||||||| | | |||   |||||||||| |||||||||||  ||| ||||| || | || || |||    
T  18804474 attatttacacttgaatagaaggcaagcaggcaacaagctgcgccgctagacctttttggatggcaaaaccaatcctcgtaaacaaaacactc-tgaacc 18804572  T
Q  150 tatgagtcatgacattgttgtgcatgacccttt--aaactctgtagaaggtcaacaacatttggtgctaggaaaccaaaa 227  Q
    || |||||||||||||||| ||||||||| |||  || || ||||||||||||||| | | ||||||||||||| |||||    
T  18804573 taggagtcatgacattgttatgcatgaccttttgaaatctatgtagaaggtcaacagcctctggtgctaggaaatcaaaa 18804652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 53 - 232
Target Start/End: Complemental strand, 25022057 - 25021876
Alignment:
Q  53 aattacacatgaatagaagacaagcaagcaacaagctgagtcactaagactttttggatagcaaaaccaattatcgaaaacataatattcatggacctat 152  Q
    |||| |||||||||||||| ||| ||| |||||||||  ||| |||  | |||||||||   |||| |||| || | ||||| || |||| ||||||||     
T  25022057 aatttcacatgaatagaaggcaaacaaacaacaagctacgtcgctagaattttttggatgataaaatcaatcattgtaaacacaacattcctggacctag 25021958  T
Q  153 gagtcatgacattgttgtgcatgaccctttaaac--tctgtagaaggtcaacaacatttggtgctaggaaaccaaaaatgtc 232  Q
    |||  ||||||||||||||||||||||||| |||  | ||| || |||||||||| | |||||||||||| |||||||||||    
T  25021957 gagatatgacattgttgtgcatgaccctttgaactttgtgtggatggtcaacaacctctggtgctaggaagccaaaaatgtc 25021876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 50 - 232
Target Start/End: Complemental strand, 22589582 - 22589399
Alignment:
Q  50 attaattacacatgaatagaagacaagcaagcaacaagctgagtcactaagactttttggatagcaaaaccaattatcgaaaacataatattcatggacc 149  Q
    |||| |||||| |||||| ||| |||||  ||||||||||| | | |||   |||||||||| |||||||||||  |||  |||| || |||||| ||||    
T  22589582 attatttacacttgaataaaaggcaagcgggcaacaagctgcgccgctagacctttttggatggcaaaaccaatcctcgtgaacacaacattcatagacc 22589483  T
Q  150 tatgagtcatgacattgttgtgcatgaccctttaaactc--tgtagaaggtcaacaacatttggtgctaggaaaccaaaaatgtc 232  Q
    |||||| |||||||||| | ||||||||| ||| |||||  |||| || ||||||| | | ||||||||||||||| ||| ||||    
T  22589482 tatgagacatgacattgctatgcatgaccttttgaactctatgta-aaagtcaacagcctctggtgctaggaaaccgaaagtgtc 22589399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 130 - 232
Target Start/End: Original strand, 24124969 - 24125073
Alignment:
Q  130 aaacataatattcatggacctatgagtcatgacattgttgtgcatgaccctttaaac--tctgtagaaggtcaacaacatttggtgctaggaaaccaaaa 227  Q
    ||||| || ||||||||||||||||| |||||||||| | ||||||||| ||| |||  | ||||||||| ||||||| | ||||||||||||| |||||    
T  24124969 aaacacaacattcatggacctatgagacatgacattgctatgcatgaccttttgaactttatgtagaaggccaacaacctctggtgctaggaaatcaaaa 24125068  T
Q  228 atgtc 232  Q
     ||||    
T  24125069 ttgtc 24125073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 102 - 220
Target Start/End: Original strand, 3187883 - 3188002
Alignment:
Q  102 ctttttggatagcaaaaccaattatcgaaaacataatattcatggacctatgagtcatgacattgttgtgcatgacccttt-aaactctgtagaaggtca 200  Q
    |||||||||| |||||||||||| ||| ||||| || ||||||||||||| ||| ||| |||||| | ||||| ||||||| |  || |||||||||| |    
T  3187883 ctttttggatggcaaaaccaattctcgtaaacacaacattcatggacctaggagacataacattgctatgcataaccctttgactctatgtagaaggtta 3187982  T
Q  201 acaacatttggtgctaggaa 220  Q
    ||||| | || |||||||||    
T  3187983 acaacctctgatgctaggaa 3188002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 102 - 220
Target Start/End: Original strand, 28196105 - 28196225
Alignment:
Q  102 ctttttggatagcaaaaccaattatcgaaaacataatattcatggacctatgagtcatgacattgttgtgcatgaccctttaaactct--gtagaaggtc 199  Q
    ||||||||||  ||||| |||||  || ||||| || || | |||| ||| ||| |||||||||||||||||||| ||||| ||||||  ||||| ||||    
T  28196105 ctttttggatgacaaaatcaattcccgtaaacacaacatccgtggatctaggagacatgacattgttgtgcatgatcctttgaactctacgtagatggtc 28196204  T
Q  200 aacaacatttggtgctaggaa 220  Q
    |||||| | ||||||||||||    
T  28196205 aacaacctatggtgctaggaa 28196225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 102 - 165
Target Start/End: Original strand, 6618198 - 6618261
Alignment:
Q  102 ctttttggatagcaaaaccaattatcgaaaacataatattcatggacctatgagtcatgacatt 165  Q
    ||||||||||  ||||||||||  ||| |||||||| ||||||||||||||||| |||||||||    
T  6618198 ctttttggatgacaaaaccaatactcgtaaacataacattcatggacctatgagacatgacatt 6618261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 130 - 232
Target Start/End: Original strand, 3821165 - 3821269
Alignment:
Q  130 aaacataatattcatggacctatgagtcatgacattgttgtgcatgaccctttaaactct--gtagaaggtcaacaacatttggtgctaggaaaccaaaa 227  Q
    |||||||| ||| ||| ||||| ||| |||||||||| | ||||| ||||||| ||||||  |||||||||||||||| | |||| ||||||  ||||||    
T  3821165 aaacataacatttatgaacctaggagacatgacattgctatgcattaccctttgaactctatgtagaaggtcaacaacctctggttctaggatgccaaaa 3821264  T
Q  228 atgtc 232  Q
     ||||    
T  3821265 gtgtc 3821269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 49 - 161
Target Start/End: Original strand, 24320197 - 24320309
Alignment:
Q  49 gattaattacacatgaatagaagacaagcaagcaacaagctgagtcactaagactttttggatagcaaaaccaattatcgaaaacataatattcatggac 148  Q
    ||||||||||||| ||||||||||||| || |||||||||||     |||   ||||||||||| ||||| ||||  ||| ||||| || ||||||| ||    
T  24320197 gattaattacacacgaatagaagacaaacaggcaacaagctgcactgctagacctttttggatatcaaaatcaatcctcgtaaacacaacattcatgaac 24320296  T
Q  149 ctatgagtcatga 161  Q
    | |||||||||||    
T  24320297 caatgagtcatga 24320309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 114 - 222
Target Start/End: Original strand, 6592501 - 6592610
Alignment:
Q  114 caaaaccaattatcgaaaacataatattcatggacctatgagtcatgacattgttgtgcatgaccctttaaactctgt--agaaggtcaacaacatttgg 211  Q
    ||||||||||  ||| ||||| || ||||||| ||||||||| ||||||||| |  ||||||||| ||| |||||| |  |||||||||||||| | |||    
T  6592501 caaaaccaatactcgtaaacacaacattcatgaacctatgagacatgacattata-tgcatgaccttttgaactctatgcagaaggtcaacaacctctgg 6592599  T
Q  212 tgctaggaaac 222  Q
     ||||||||||    
T  6592600 agctaggaaac 6592610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 139 - 231
Target Start/End: Complemental strand, 39671329 - 39671235
Alignment:
Q  139 attcatggacctatgagtcatgacattgttgtgcatgaccctttaaactct--gtagaaggtcaacaacatttggtgctaggaaaccaaaaatgt 231  Q
    ||||||||| ||| ||| ||||||||| || | ||||||||||| ||||||  ||| ||||| |||||| | |||||||||||| || |||||||    
T  39671329 attcatggatctaggagacatgacatttttattcatgacccttttaactctacgtaaaaggttaacaacctctggtgctaggaagccgaaaatgt 39671235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 123 - 174
Target Start/End: Complemental strand, 42922276 - 42922225
Alignment:
Q  123 ttatcgaaaacataatattcatggacctatgagtcatgacattgttgtgcat 174  Q
    |||||| ||||| |||||||||||||| | |||| |||||||||||||||||    
T  42922276 ttatcgtaaacacaatattcatggaccgaggagttatgacattgttgtgcat 42922225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 158 - 221
Target Start/End: Complemental strand, 40223541 - 40223476
Alignment:
Q  158 atgacattgttgtgcatgaccctttaaactct--gtagaaggtcaacaacatttggtgctaggaaa 221  Q
    ||||||||||| ||||||||| ||| ||||||  |||||||||||||||| |  ||||||||||||    
T  40223541 atgacattgttatgcatgaccttttgaactctatgtagaaggtcaacaacctccggtgctaggaaa 40223476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 48 - 226
Target Start/End: Original strand, 3825495 - 3825674
Alignment:
Q  48 ggattaattacacatgaatagaagacaagcaagcaacaagctgagtcactaagactttttggatagcaaaaccaattatcgaaaacataatattcatgga 147  Q
    ||||||||||||||| |||| ||||||| | ||||||||| || | | ||| |  |||||  || |||| |  ||| |||| ||||| ||||||||||||    
T  3825495 ggattaattacacataaataaaagacaaacgagcaacaagttgcgccgctaggttttttta-atggcaatattaatcatcgtaaacacaatattcatgga 3825593  T
Q  148 cctatgagtcatgacattgttgtgcatgaccctttaaactctgt--agaaggtcaacaacatttggtgctaggaaaccaaa 226  Q
     ||||||  |||||| ||| | ||||| || |||| || |||||  |||||||||||||| | |||| ||||||| |||||    
T  3825594 tctatgaaacatgacgttgctatgcattactctttgaattctgtgtagaaggtcaacaacctatggttctaggaagccaaa 3825674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 48 - 77
Target Start/End: Complemental strand, 31150358 - 31150329
Alignment:
Q  48 ggattaattacacatgaatagaagacaagc 77  Q
    ||||||||||||||||||||||||||||||    
T  31150358 ggattaattacacatgaatagaagacaagc 31150329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 134 - 232
Target Start/End: Original strand, 36004067 - 36004167
Alignment:
Q  134 ataatattcatggacctatgagtcatgacattgttgtgcatgaccctttaaactc--tgtagaaggtcaacaacatttggtgctaggaaaccaaaaatgt 231  Q
    |||| ||||||||||||||||| ||| |  ||||| | |||||||||| ||||||  | |||| |||||||||| | ||||| ||||||  |||||||||    
T  36004067 ataacattcatggacctatgagacataatgttgttatccatgacccttgaaactctttttagatggtcaacaacctctggtgataggaagtcaaaaatgt 36004166  T
Q  232 c 232  Q
    |    
T  36004167 c 36004167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 222
Target Start/End: Complemental strand, 35740125 - 35740058
Alignment:
Q  157 catgacattgttgtgcatgaccctttaaactct--gtagaaggtcaacaacatttggtgctaggaaac 222  Q
    |||||||||||| ||||||||  ||| ||||||  |||||||||||||||  | ||||||||||||||    
T  35740125 catgacattgttatgcatgactttttgaactctatgtagaaggtcaacaatctctggtgctaggaaac 35740058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 62; Significance: 6e-27; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 48 - 227
Target Start/End: Original strand, 24016194 - 24016377
Alignment:
Q  48 ggattaattacacatgaatagaagacaagcaagcaacaagctgagtcactaagactttttgg--atagcaaaaccaattatcgaaaacataatattcatg 145  Q
    |||||||| ||| |||||||||||||||| | | ||||| ||| |||| ||   ||||||    ||||||||||||||||||| |||||||||||| |||    
T  24016194 ggattaatcacatatgaatagaagacaagtaggtaacaatctgcgtcattagatcttttttttaatagcaaaaccaattatcgtaaacataatatttatg 24016293  T
Q  146 gacctatgagtcatgacattgttgtgcatgaccctttaaactc--tgtagaaggtcaacaacatttggtgctaggaaaccaaaa 227  Q
     || || ||| ||||||||| |||||||||||||||| |||||  |||| ||  |||||||||| |||||||||||||||||||    
T  24016294 tacttaggagacatgacattcttgtgcatgaccctttgaactctatgtaaaaaatcaacaacatctggtgctaggaaaccaaaa 24016377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 102 - 203
Target Start/End: Original strand, 32115631 - 32115734
Alignment:
Q  102 ctttttggatagcaaaaccaattatcgaaaacataatattcatggacctatgagtcatgacattgttgtgcatgaccctttaaactc--tgtagaaggtc 199  Q
    |||||| |||||||||| |||| |||| ||||| || ||||||||||||| ||| |||||||||||| ||||||||| ||| |||||  |||||||||||    
T  32115631 ctttttagatagcaaaatcaatcatcgtaaacacaacattcatggacctaggagacatgacattgttatgcatgaccttttgaactctttgtagaaggtc 32115730  T
Q  200 aaca 203  Q
    ||||    
T  32115731 aaca 32115734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 54 - 213
Target Start/End: Complemental strand, 28009229 - 28009068
Alignment:
Q  54 attacacatgaatagaagacaagcaagcaacaagctgagtcactaagactttttggatagcaaaaccaattatcgaaaacataatattcatggacctatg 153  Q
    |||||||||||||||||| ||| |   ||| |||||| |||  || | |||||||||| |||||| ||||| | | ||| | ||  |||||||||||| |    
T  28009229 attacacatgaatagaaggcaaacggacaataagctgcgtcgttaggcctttttggattgcaaaatcaattctggtaaagacaacgttcatggacctagg 28009130  T
Q  154 agtcatgacattgttgtgcatgaccctttaaactctgt--agaaggtcaacaacatttggtg 213  Q
    |||||||||||||||||| |||||||||| |||| | |  |||||||||||||| |||||||    
T  28009129 agtcatgacattgttgtgtatgaccctttgaactatatacagaaggtcaacaacttttggtg 28009068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 104 - 220
Target Start/End: Complemental strand, 4166114 - 4165996
Alignment:
Q  104 ttttggatagcaaaaccaattatcgaaaacataatattcatggacctatgagtcatgacattgttgtgcatgaccctttaaactc--tgtagaaggtcaa 201  Q
    |||||||| |||||||||||  ||| |||||  ||||| || |||||| | | |||||||||||  ||||||||| |||||||||  |||||||||||||    
T  4166114 ttttggatggcaaaaccaatcctcgtaaacactatatttattgacctaggtgacatgacattgtcatgcatgaccttttaaactctatgtagaaggtcaa 4166015  T
Q  202 caacatttggtgctaggaa 220  Q
    |||| | ||||||||||||    
T  4166014 caacctctggtgctaggaa 4165996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 104 - 220
Target Start/End: Complemental strand, 4206788 - 4206670
Alignment:
Q  104 ttttggatagcaaaaccaattatcgaaaacataatattcatggacctatgagtcatgacattgttgtgcatgaccctttaaactc--tgtagaaggtcaa 201  Q
    |||||||| |||||||||||  ||| |||||  |||||||| |||||| | | |||||||||||  ||||||||| ||| |||||  |||||||||||||    
T  4206788 ttttggatggcaaaaccaatcctcgtaaacactatattcattgacctaggtgacatgacattgtcatgcatgaccttttgaactctatgtagaaggtcaa 4206689  T
Q  202 caacatttggtgctaggaa 220  Q
    |||| | ||||||||||||    
T  4206688 caacctctggtgctaggaa 4206670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 104 - 220
Target Start/End: Complemental strand, 29338271 - 29338153
Alignment:
Q  104 ttttggatagcaaaaccaattatcgaaaacataatattcatggacctatgagtcatgacattgttgtgcatgaccctttaaac--tctgtagaaggtcaa 201  Q
    |||||||||| |||| ||||  | | ||||| || ||||||||||||| |||||||||||||| ||||||||||||||| |||  | |||||||||||||    
T  29338271 ttttggatagaaaaatcaatccttgtaaacacaacattcatggacctaggagtcatgacattgatgtgcatgaccctttgaaccatatgtagaaggtcaa 29338172  T
Q  202 caacatttggtgctaggaa 220  Q
    | |  | ||||||||||||    
T  29338171 cgatctctggtgctaggaa 29338153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 96 - 181
Target Start/End: Complemental strand, 3137447 - 3137362
Alignment:
Q  96 ctaagactttttggatagcaaaaccaattatcgaaaacataatattcatggacctatgagtcatgacattgttgtgcatgaccctt 181  Q
    ||||| |||||||||| |||||||||||  ||| ||||| || ||||||||||||| ||| |||||||||| | ||||||||||||    
T  3137447 ctaagcctttttggatggcaaaaccaatcctcgtaaacacaacattcatggacctaggagacatgacattgctatgcatgaccctt 3137362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 49 - 166
Target Start/End: Original strand, 34168781 - 34168897
Alignment:
Q  49 gattaattacacatgaatagaagacaagcaagcaacaagctgagtcactaagactttttggatagcaaaaccaattatcgaaaacataatattcatggac 148  Q
    ||||||||||||||||||||||| |||||  || ||||| || | | ||| | ||||||||||||||||||||||  |||  |||| || |||||||||     
T  34168781 gattaattacacatgaatagaaggcaagcgggcgacaagttgcgccgctaggcctttttggatagcaaaaccaatcctcg-taacacaacattcatggat 34168879  T
Q  149 ctatgagtcatgacattg 166  Q
    ||| ||||||||||||||    
T  34168880 ctaggagtcatgacattg 34168897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 130 - 232
Target Start/End: Original strand, 959522 - 959625
Alignment:
Q  130 aaacataatattcatggacctatgagtcatgacattgttgtgcatgaccctttaaactct-gtagaaggtcaacaacatttggtgctaggaaaccaaaaa 228  Q
    ||||| || ||||||||||||| ||| ||  |||||| | ||||||||| ||| ||||   |||||||||||||||| | ||||||||||||||| ||||    
T  959522 aaacacaacattcatggacctaggagacacaacattgctatgcatgaccttttgaacttacgtagaaggtcaacaacctctggtgctaggaaaccgaaaa 959621  T
Q  229 tgtc 232  Q
    ||||    
T  959622 tgtc 959625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 130 - 189
Target Start/End: Original strand, 3714858 - 3714917
Alignment:
Q  130 aaacataatattcatggacctatgagtcatgacattgttgtgcatgaccctttaaactct 189  Q
    ||||| || |||||||||  |||||| ||||||||||||||||||||  |||||||||||    
T  3714858 aaacacaacattcatggatttatgagacatgacattgttgtgcatgattctttaaactct 3714917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 50 - 205
Target Start/End: Complemental strand, 33220957 - 33220800
Alignment:
Q  50 attaattacacatgaatagaagacaagcaagcaacaagctgagtcactaagactttttggatagcaaaaccaattatcgaaaacataatattcatggacc 149  Q
    |||| |||||||||||||| || |||||   |||||||||| | | |||   ||||| |||| |||||||||||||||| ||||  || |||||||||||    
T  33220957 attacttacacatgaataggaggcaagcggccaacaagctgcgccgctagaccttttaggatggcaaaaccaattatcgtaaacgcaacattcatggacc 33220858  T
Q  150 tatgagtcatgacattgttgtgcatgaccctttaaac--tctgtagaaggtcaacaac 205  Q
    ||  || ||  |||||| | ||||| |||||||  ||  | |||||||||||||||||    
T  33220857 tagaagacacaacattgctatgcataaccctttggactatatgtagaaggtcaacaac 33220800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 102 - 220
Target Start/End: Original strand, 34304409 - 34304529
Alignment:
Q  102 ctttttggatagcaaaaccaattatcgaaaacataatattcatggacctatgagtcatgacattgttgtgcatgaccctttaaactct--gtagaaggtc 199  Q
    |||||||||| |||||| ||||  ||| ||| | || |||||| |||||||||| ||||| |||| | ||||| || ||||  |||||  ||||||||||    
T  34304409 ctttttggattgcaaaatcaatcctcgtaaatacaacattcatagacctatgagacatgatattgctatgcataactctttggactctatgtagaaggtc 34304508  T
Q  200 aacaacatttggtgctaggaa 220  Q
    |||| ||| || |||||||||    
T  34304509 aacatcatctgatgctaggaa 34304529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 61; Significance: 2e-26; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 50 - 203
Target Start/End: Original strand, 13413212 - 13413367
Alignment:
Q  50 attaattacacatgaatagaagacaagcaagcaacaagctgagtcactaagactttttggatagcaaaaccaattatcgaaaacataatattcatggacc 149  Q
    |||| |||||| ||||||||||||||||   |||||||||||| |  || | |||||||||| |||||||||||| ||  ||||| || |||||||||||    
T  13413212 attatttacacttgaatagaagacaagcggacaacaagctgagccgttaggcctttttggatggcaaaaccaattctcataaacacaacattcatggacc 13413311  T
Q  150 tatgagtcatgacattgttgtgcatgaccctttaaactc--tgtagaaggtcaaca 203  Q
    || ||| |||||||||||| ||||||||| ||| |||||  |||||||||||||||    
T  13413312 taggagacatgacattgttatgcatgaccttttgaactctatgtagaaggtcaaca 13413367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 103 - 205
Target Start/End: Complemental strand, 16352037 - 16351933
Alignment:
Q  103 tttttggatagcaaaaccaattatcgaaaacataatattcatggacctatgagtcatgacattgttgtgcatgaccctttaaactc--tgtagaaggtca 200  Q
    ||||| ||| |||||| |||| |||| |||||||||||||||| ||||| ||| |||||||||||||||||||||| ||| |||||  ||||||||||||    
T  16352037 tttttagatggcaaaaacaatcatcgtaaacataatattcatgtacctaagagacatgacattgttgtgcatgaccatttgaactctatgtagaaggtca 16351938  T
Q  201 acaac 205  Q
    |||||    
T  16351937 acaac 16351933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 50 - 222
Target Start/End: Original strand, 17344499 - 17344673
Alignment:
Q  50 attaattacacatgaatagaagacaagcaagcaacaagctgagtcactaagactttttggatagcaaaaccaattatcgaaaacataatattcatggacc 149  Q
    |||| |||||| |||||||||| |||||  ||||||||||| | |  ||   |||||||||| | |||| ||||  ||| ||||| || |||||||||||    
T  17344499 attatttacacttgaatagaaggcaagccggcaacaagctgcgccgatagacctttttggatcgaaaaatcaatcctcgtaaacacaacattcatggacc 17344598  T
Q  150 tatgagtcatgacattgttgtgcatgaccctttaaactc--tgtagaaggtcaacaacatttggtgctaggaaac 222  Q
    || ||| |||||||||||| ||||||||| ||| |||||  ||||||||||||||| | | ||||||||||||||    
T  17344599 taggagacatgacattgttatgcatgaccttttgaactctatgtagaaggtcaacagcctatggtgctaggaaac 17344673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 102 - 189
Target Start/End: Complemental strand, 3262336 - 3262249
Alignment:
Q  102 ctttttggatagcaaaaccaattatcgaaaacataatattcatggacctatgagtcatgacattgttgtgcatgaccctttaaactct 189  Q
    |||||| ||| |||||| ||||| ||| |||||||||||| ||||||||||||||||||||| || |||||| |||||||| ||||||    
T  3262336 cttttttgatggcaaaatcaattctcgtaaacataatatttatggacctatgagtcatgacactgatgtgcaagaccctttgaactct 3262249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 113 - 220
Target Start/End: Complemental strand, 41868091 - 41867982
Alignment:
Q  113 gcaaaaccaattatcgaaaacataatattcatggacctatgagtcatgacattgttgtgcatgaccctttaaactc--tgtagaaggtcaacaacatttg 210  Q
    |||||||||||  ||| ||||| || ||||||||||||  ||| |||||||||||| ||||||||| ||| |||||  ||||||||||||||| | | ||    
T  41868091 gcaaaaccaatcctcgtaaacacaacattcatggacctgggagacatgacattgttatgcatgaccttttgaactctatgtagaaggtcaacagcctctg 41867992  T
Q  211 gtgctaggaa 220  Q
    ||||||||||    
T  41867991 gtgctaggaa 41867982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 139 - 220
Target Start/End: Original strand, 5532370 - 5532453
Alignment:
Q  139 attcatggacctatgagtcatgacattgttgtgcatgaccctttaaactc--tgtagaaggtcaacaacatttggtgctaggaa 220  Q
    ||||||| || || |||||||| ||||||||||||||||||||| |||||  |||||||| |||||||| | ||||||||||||    
T  5532370 attcatgaacttaggagtcatggcattgttgtgcatgaccctttgaactctatgtagaagctcaacaacctatggtgctaggaa 5532453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 50 - 232
Target Start/End: Complemental strand, 4413312 - 4413128
Alignment:
Q  50 attaattacacatgaatagaagacaagcaagcaacaagctgagtcactaagactttttggatagcaaaaccaattatcgaaaacataatattcatggacc 149  Q
    |||| |||||| |||||||||| ||||   ||||||||||| | | |||   |||||||||| |||||| ||||  ||   |||| || |||||||||||    
T  4413312 attatttacacttgaatagaaggcaagtgggcaacaagctgcgccgctagacctttttggatggcaaaatcaatcctcatgaacacaacattcatggacc 4413213  T
Q  150 tatgagtcatgacattgttgtgcatgaccctttaaactct--gtagaaggtcaacaacatttggtgctaggaaaccaaaaatgtc 232  Q
    || ||| |||||| ||| | ||||||||| ||| ||| ||  |||||||||||||||  | ||||||||||||||| ||| ||||    
T  4413212 taggagacatgactttgctatgcatgaccttttgaaccctatgtagaaggtcaacaatctctggtgctaggaaaccgaaagtgtc 4413128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 48 - 123
Target Start/End: Original strand, 41702131 - 41702206
Alignment:
Q  48 ggattaattacacatgaatagaagacaagcaagcaacaagctgagtcactaagactttttggatagcaaaaccaat 123  Q
    |||||| ||||||||||||||||| ||||   ||||||||||| | ||||| | |||||||||| |||||||||||    
T  41702131 ggattacttacacatgaatagaaggcaagtgggcaacaagctgcgccactaggcctttttggatggcaaaaccaat 41702206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 50 - 232
Target Start/End: Complemental strand, 18745200 - 18745016
Alignment:
Q  50 attaattacacatgaatagaagacaagcaagcaacaagctgagtcactaagactttttggatagcaaaaccaattatcgaaaacataatattcatggacc 149  Q
    |||| |||||| |||||||||||||||| ||||| |||||| | | |||   |||||||||| |||||||||||  |   ||||| || |||||| ||||    
T  18745200 attatttacacttgaatagaagacaagcgagcaataagctgcgccgctagacctttttggatggcaaaaccaatccttataaacacaacattcatagacc 18745101  T
Q  150 tatgagtcatgacattgttgtgcatgaccctttaaactc--tgtagaaggtcaacaacatttggtgctaggaaaccaaaaatgtc 232  Q
    || ||   ||||||||| | ||||||| | ||| |||||  ||||||||| ||||| | | ||||||||| ||| | ||||||||    
T  18745100 taggaaatatgacattgctatgcatgatcttttgaactctatgtagaaggccaacagcctatggtgctagaaaatcgaaaatgtc 18745016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 146 - 232
Target Start/End: Complemental strand, 20142875 - 20142787
Alignment:
Q  146 gacctatgagtcatgacattgttgtgcatgaccctttaaactct--gtagaaggtcaacaacatttggtgctaggaaaccaaaaatgtc 232  Q
    |||||| ||| |||||||||||| || |||||| ||| ||||||  ||| |||||||||||| |||| |||||| ||||||||| ||||    
T  20142875 gacctaggagacatgacattgttatgtatgaccttttgaactctatgtataaggtcaacaacctttgatgctagaaaaccaaaagtgtc 20142787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 48 - 123
Target Start/End: Original strand, 30602348 - 30602423
Alignment:
Q  48 ggattaattacacatgaatagaagacaagcaagcaacaagctgagtcactaagactttttggatagcaaaaccaat 123  Q
    |||||||||||||||||||||||| || ||  ||||||||||| |   ||| | |||||||||| |||||||||||    
T  30602348 ggattaattacacatgaatagaaggcatgcgggcaacaagctgcgctgctaggcctttttggatggcaaaaccaat 30602423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 50 - 123
Target Start/End: Complemental strand, 3208490 - 3208417
Alignment:
Q  50 attaattacacatgaatagaagacaagcaagcaacaagctgagtcactaagactttttggatagcaaaaccaat 123  Q
    |||| |||||| |||||||||| |||||  ||||||||||| | | ||||  |||||||||| |||||||||||    
T  3208490 attatttacacttgaatagaaggcaagcgggcaacaagctgcgccgctaaacctttttggatggcaaaaccaat 3208417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 139 - 205
Target Start/End: Original strand, 29808025 - 29808093
Alignment:
Q  139 attcatggacctatgagtcatgacattgttgtgcatgaccctttaaactc--tgtagaaggtcaacaac 205  Q
    ||||||||||||| || ||||||  |||||||||||||||  ||||||||  |||| ||||||||||||    
T  29808025 attcatggacctaggattcatgatgttgttgtgcatgaccacttaaactctatgtaaaaggtcaacaac 29808093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 55; Significance: 9e-23; HSPs: 25)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 58 - 205
Target Start/End: Original strand, 4419133 - 4419281
Alignment:
Q  58 cacatgaatagaagacaagcaagcaacaagctgagtcactaagactttttggatagcaaaaccaattatcgaaaacataatattcatggacctatgagtc 157  Q
    ||||||||||| || |||||  ||||||||||| | | ||| || ||||||||| ||||||||||| |||| ||||| || ||||||||||||| ||| |    
T  4419133 cacatgaataggaggcaagcgggcaacaagctgcgccgcta-gattttttggatggcaaaaccaatcatcgtaaacacaacattcatggacctaggagac 4419231  T
Q  158 atgacattgttgtgcatgaccctttaaactc--tgtagaaggtcaacaac 205  Q
    || |||||||| ||||| ||||||| |||||  |||||||||||||||||    
T  4419232 ataacattgttatgcataaccctttgaactctatgtagaaggtcaacaac 4419281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 50 - 202
Target Start/End: Original strand, 53619447 - 53619601
Alignment:
Q  50 attaattacacatgaatagaagacaagcaagcaacaagctgagtcactaagactttttggatagcaaaaccaattatcgaaaacataatattcatggacc 149  Q
    |||| |||||||||||||| ||  ||| | ||||||||||| | | |||   |||||||||| |||||||||||| ||| ||||| || |||||||||||    
T  53619447 attacttacacatgaataggaggtaagtaggcaacaagctgcgccgctagacctttttggatggcaaaaccaattctcgtaaacacaacattcatggacc 53619546  T
Q  150 tatgagtcatgacattgttgtgcatgaccctttaaactc--tgtagaaggtcaac 202  Q
    || ||| ||| |||||||| ||||| |||||||| ||||  ||||||||||||||    
T  53619547 taagagacataacattgttatgcataaccctttagactctatgtagaaggtcaac 53619601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 49 - 187
Target Start/End: Original strand, 45661551 - 45661689
Alignment:
Q  49 gattaattacacatgaatagaagacaagcaagcaacaagctgagtcactaagactttttggatagcaaaaccaattatcgaaaacataatattcatggac 148  Q
    ||||||||||| |||| |||||| |||||  ||||||| |||   |  || | |||||||||||| |||||||||  ||| ||||| |||||||||||||    
T  45661551 gattaattacatatgagtagaaggcaagcgtgcaacaaactgtaccgttaggtctttttggatagtaaaaccaatcctcgtaaacacaatattcatggac 45661650  T
Q  149 ctatgagtcatgacattgttgtgcatgaccctttaaact 187  Q
    ||| |||| |||||||||||||| |||||||||| ||||    
T  45661651 ctacgagttatgacattgttgtgtatgaccctttgaact 45661689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 113 - 232
Target Start/End: Complemental strand, 56462289 - 56462168
Alignment:
Q  113 gcaaaaccaattatcgaaaacataatattcatggacctatgagtcatgacattgttgtgcatgaccctttaaactct--gtagaaggtcaacaacatttg 210  Q
    |||||||||||| ||| ||||| || ||| |||||| || ||| |||||||||||  ||||||| ||||| ||||||  |||||||||||||||| | ||    
T  56462289 gcaaaaccaattctcgtaaacacaacatttatggacttaggagacatgacattgtcatgcatgatcctttgaactctatgtagaaggtcaacaacctctg 56462190  T
Q  211 gtgctaggaaaccaaaaatgtc 232  Q
    ||||||||||||||||| ||||    
T  56462189 gtgctaggaaaccaaaagtgtc 56462168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 102 - 188
Target Start/End: Original strand, 23242813 - 23242899
Alignment:
Q  102 ctttttggatagcaaaaccaattatcgaaaacataatattcatggacctatgagtcatgacattgttgtgcatgaccctttaaactc 188  Q
    ||||||||||| ||||| |||| |||| ||||| |||||| ||||||||| |||  ||||||||||| |||||||||||||||||||    
T  23242813 ctttttggataacaaaatcaatcatcgtaaacacaatatttatggacctaagagaaatgacattgttatgcatgaccctttaaactc 23242899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 50 - 232
Target Start/End: Original strand, 53098282 - 53098466
Alignment:
Q  50 attaattacacatgaatagaagacaagcaagcaacaagctgagtcactaagactttttggatagcaaaaccaattatcgaaaacataatattcatggacc 149  Q
    |||||||||||||||||||||||||| || |||| |||||  | | | | |  ||||||||| | |||| ||||  ||| ||||| | ||||| |||||     
T  53098282 attaattacacatgaatagaagacaaacatgcaataagctatgccgcgaggcatttttggattgtaaaatcaatcctcgtaaacacagtattcttggaca 53098381  T
Q  150 tatgagtcatgacattgttgtgcatgaccctttaaactct--gtagaaggtcaacaacatttggtgctaggaaaccaaaaatgtc 232  Q
    ||  ||||| ||||||| || |||||||| ||| ||||||  ||||||||| |||||| | || |||||||||||||||||||||    
T  53098382 taaaagtcacgacattgatgggcatgaccatttgaactctatgtagaaggttaacaacctctgatgctaggaaaccaaaaatgtc 53098466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 101 - 205
Target Start/End: Complemental strand, 54191046 - 54190940
Alignment:
Q  101 actttttggatagcaaaaccaattatcgaaaacataatattcatggacctatgagtcatgacattgttgtgcatgaccctttaaactc--tgtagaaggt 198  Q
    |||||||||||||||||||||||  | | ||| | |||||| |||||| || |||||||||||||||| |||||| |||||| |||||  ||| ||||||    
T  54191046 actttttggatagcaaaaccaatctttgtaaatacaatatttatggacttaagagtcatgacattgttatgcatggccctttgaactctatgtggaaggt 54190947  T
Q  199 caacaac 205  Q
    |||||||    
T  54190946 caacaac 54190940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 50 - 232
Target Start/End: Original strand, 3329857 - 3330041
Alignment:
Q  50 attaattacacatgaatagaagacaagcaagcaacaagctgagtcactaagactttttggatagcaaaaccaattatcgaaaacataatattcatggacc 149  Q
    |||| |||||| ||||||| || |||||  ||||||||||| | | |||   |||||||||| ||||||||||| |||| ||||| |  |||||||||||    
T  3329857 attacttacacgtgaataggaggcaagcgggcaacaagctgcgccgctagacctttttggatggcaaaaccaatcatcgtaaacacagcattcatggacc 3329956  T
Q  150 tatgagtcatgacattgttgtgcatgaccctttaaactc--tgtagaaggtcaacaacatttggtgctaggaaaccaaaaatgtc 232  Q
    || ||| ||| |||||| | ||||| |||||||  ||||  ||||||||||||||  | | || ||||||||| |||||| ||||    
T  3329957 taggagacataacattgctatgcataaccctttggactctatgtagaaggtcaactgcctctgatgctaggaagccaaaagtgtc 3330041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 130 - 232
Target Start/End: Original strand, 25504236 - 25504340
Alignment:
Q  130 aaacataatattcatggacctatgagtcatgacattgttgtgcatgaccctttaaactctgt--agaaggtcaacaacatttggtgctaggaaaccaaaa 227  Q
    ||||| |||||||||||||||||||| |||||||||  | ||||||||| |||||||||| |  | ||||||||||   | | |||||||||||||||||    
T  25504236 aaacacaatattcatggacctatgagacatgacattactatgcatgaccttttaaactctatttaaaaggtcaacagtctctagtgctaggaaaccaaaa 25504335  T
Q  228 atgtc 232  Q
    |||||    
T  25504336 atgtc 25504340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 50 - 223
Target Start/End: Complemental strand, 600938 - 600763
Alignment:
Q  50 attaattacacatgaatagaagacaagcaagcaacaagctgagtcactaagactttttggatagcaaaaccaattatcgaaaacataatattcatggacc 149  Q
    |||| |||||| |||||||||| |||||   |||||||||  ||| |||    ||||||||| ||||||| ||| |||| ||||| |  ||| |||||||    
T  600938 attatttacacttgaatagaaggcaagcggacaacaagctacgtcgctatacatttttggatggcaaaactaatcatcgtaaacacagcattaatggacc 600839  T
Q  150 tatgagtcatgacattgttgtgcatgaccctttaaactct--gtagaaggtcaacaacatttggtgctaggaaacc 223  Q
    || ||| |||||||| ||| | ||||||| ||| ||||||  |||||||||||||||| | ||||| |||||||||    
T  600838 taggagacatgacatagttatacatgaccttttgaactctatgtagaaggtcaacaacctctggtgttaggaaacc 600763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 48 - 227
Target Start/End: Original strand, 26521348 - 26521528
Alignment:
Q  48 ggattaattacacatgaatagaagacaagcaagcaacaagctgagtcactaagactttttggatagcaaaaccaattatcgaaaacataatattcatgga 147  Q
    |||||| ||||||||| ||||||| |||||   ||| |||||| | | ||||  ||||||||||  ||||||||||  ||| ||||| || || |||||     
T  26521348 ggattacttacacatggatagaaggcaagcggacaaaaagctgtgccgctaaacctttttggatgacaaaaccaatcctcgtaaacacaacat-catggg 26521446  T
Q  148 cctatgagtcatgacattgttgtgcatgaccctttaaactct--gtagaaggtcaacaacatttggtgctaggaaaccaaaa 227  Q
    |||| ||  |||||||||| |  |||||||||||| |||| |  |||||||||||||| | | |||||||||||||||||||    
T  26521447 cctaggatacatgacattgctacgcatgaccctttgaactgtatgtagaaggtcaacagcctctggtgctaggaaaccaaaa 26521528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 102 - 222
Target Start/End: Complemental strand, 7536765 - 7536643
Alignment:
Q  102 ctttttggatagcaaaaccaattatcgaaaacataatattcatggacctatgagtcatgacattgttgtgcatgaccctttaaactct--gtagaaggtc 199  Q
    ||||||||||  |||||||||| || | |||||||| ||||||||| ||| ||| ||| | |||| | |||| || | ||| ||||||  ||||||||||    
T  7536765 ctttttggatcacaaaaccaatcattgtaaacataacattcatggatctacgagacataaaattgctatgcacgatcatttgaactctatgtagaaggtc 7536666  T
Q  200 aacaacatttggtgctaggaaac 222  Q
    |||||| | ||||||||||||||    
T  7536665 aacaacctctggtgctaggaaac 7536643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 50 - 221
Target Start/End: Complemental strand, 34107942 - 34107769
Alignment:
Q  50 attaattacacatgaatagaagacaagcaagcaacaagctgagtcactaagactttttggatagcaaaaccaattatcgaaaacataatattcatggacc 149  Q
    |||| |||||| ||||||||| |||||   ||||||||||| | |  |||   |||||||||  ||||||||||  |||  |||| || ||||||||| |    
T  34107942 attatttacacttgaatagaaaacaagtgggcaacaagctgtgccgttaaacttttttggatgacaaaaccaatcctcgtgaacacaacattcatggatc 34107843  T
Q  150 tatgagtcatgacattgttgtgcatgaccctttaaactct--gtagaaggtcaacaacatttggtgctaggaaa 221  Q
    || ||| ||| |||||||| ||||||||  ||| ||||||  |||||||||||||| | | |||||||||||||    
T  34107842 taggagacataacattgttatgcatgactttttgaactctatgtagaaggtcaacagcctctggtgctaggaaa 34107769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 157 - 203
Target Start/End: Complemental strand, 50464435 - 50464387
Alignment:
Q  157 catgacattgttgtgcatgaccctttaaactct--gtagaaggtcaaca 203  Q
    |||||||||||| ||||||||||||||||||||  ||||||||||||||    
T  50464435 catgacattgttatgcatgaccctttaaactctacgtagaaggtcaaca 50464387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 52 - 168
Target Start/End: Complemental strand, 50442723 - 50442607
Alignment:
Q  52 taattacacatgaatagaagacaagcaagcaacaagctgagtcactaagactttttggatagcaaaaccaattatcgaaaacataatattcatggaccta 151  Q
    |||||||| | |||| ||||||||||  ||||||||||| | ||||||  |||||||||| |||||||||||  ||  ||||| || || |||| |||||    
T  50442723 taattacaaaggaatggaagacaagcgggcaacaagctgcgccactaaccctttttggatggcaaaaccaatcctcttaaacacaacatccatgaaccta 50442624  T
Q  152 tgagtcatgacattgtt 168  Q
     ||| ||| ||||||||    
T  50442623 ggagacataacattgtt 50442607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 55 - 134
Target Start/End: Original strand, 12053333 - 12053412
Alignment:
Q  55 ttacacatgaatagaagacaagcaagcaacaagctgagtcactaagactttttggatagcaaaaccaattatcgaaaaca 134  Q
    ||||||||||||||||| ||||||  |||||||||| ||| ||  | |||||| ||| |||||||||||| ||| |||||    
T  12053333 ttacacatgaatagaaggcaagcagacaacaagctgcgtcgctcggcctttttcgatggcaaaaccaattctcgtaaaca 12053412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 130 - 218
Target Start/End: Original strand, 16955401 - 16955491
Alignment:
Q  130 aaacataatattcatggacctatgagtcatgacattgttgtgcatgaccctttaaactct--gtagaaggtcaacaacatttggtgctagg 218  Q
    ||||| || |||||||| |||| ||| |||||||||| | ||||||||| ||| ||||||  ||||||||||| |||| | ||||||||||    
T  16955401 aaacacaacattcatgggcctaggagacatgacattgctatgcatgaccttttgaactctatgtagaaggtcagcaacctctggtgctagg 16955491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 99 - 202
Target Start/End: Original strand, 23255622 - 23255728
Alignment:
Q  99 agactttt-tggatagcaaaaccaattatcgaaaacataatattcatggacctatgagtcatgacattgttgtgcatgaccctttaaactc--tgtagaa 195  Q
    |||||||| ||||| |||||| ||||  ||| ||||| ||||||||||||| || ||| ||| |||||||| ||||| |||||||  ||||  |||||||    
T  23255622 agacttttctggatggcaaaatcaatcctcgtaaacacaatattcatggacttaggagacataacattgttatgcataaccctttggactctatgtagaa 23255721  T
Q  196 ggtcaac 202  Q
    |||||||    
T  23255722 ggtcaac 23255728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 50 - 189
Target Start/End: Complemental strand, 30940978 - 30940839
Alignment:
Q  50 attaattacacatgaatagaagacaagcaagcaacaagctgagtcactaagactttttggatagcaaaaccaattatcgaaaacataatattcatggacc 149  Q
    |||| |||||| |||||||||| |||||  ||||||||||| ||| |||   |||||||||| |||||| ||||  ||   |||| || |||||| ||||    
T  30940978 attatttacacttgaatagaaggcaagcgggcaacaagctgcgtcgctagacctttttggatggcaaaatcaatcctcatgaacacaacattcatagacc 30940879  T
Q  150 tatgagtcatgacattgttgtgcatgaccctttaaactct 189  Q
    || ||   ||||||||||| ||||||||| ||| ||||||    
T  30940878 taggatatatgacattgttatgcatgaccttttgaactct 30940839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 104 - 220
Target Start/End: Complemental strand, 38535760 - 38535643
Alignment:
Q  104 ttttggatagcaaaaccaattatcgaaaacataatattcatggacctatgagtcatgacattgttgtgcatgaccctttaaactc--tgtagaaggtcaa 201  Q
    |||||||| ||||||| |||  ||| ||||| || || ||||||||||| || |||||||||| | |||||||| |||| |||||  |||||| ||| ||    
T  38535760 ttttggat-gcaaaactaatcctcgtaaacacaacatccatggacctataagacatgacattgctatgcatgactctttgaactctatgtagagggtgaa 38535662  T
Q  202 caacatttggtgctaggaa 220  Q
    |||| | ||||||||||||    
T  38535661 caacctctggtgctaggaa 38535643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 55 - 202
Target Start/End: Original strand, 39001263 - 39001412
Alignment:
Q  55 ttacacatgaatagaagacaagcaagcaacaagctgagtcactaagactttttggatagcaaaaccaattatcgaaaacataatattcatggacctatga 154  Q
    |||||||||||||| || |||||  ||||||| ||| | | |||   ||||||||||  ||||||||||  ||| ||||| || ||||||||||||| ||    
T  39001263 ttacacatgaataggaggcaagcgggcaacaaactgcgccgctagacctttttggatgacaaaaccaatcctcgtaaacacaacattcatggacctagga 39001362  T
Q  155 gtcatgacattgttgtgcatgaccctttaaactc--tgtagaaggtcaac 202  Q
    | ||  |||||||| ||||| | |||||  ||||  ||||||||||||||    
T  39001363 gacacaacattgttatgcataatcctttggactctatgtagaaggtcaac 39001412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 48 - 90
Target Start/End: Original strand, 41945018 - 41945060
Alignment:
Q  48 ggattaattacacatgaatagaagacaagcaagcaacaagctg 90  Q
    |||||| ||||||||||||||||||||  ||||||||||||||    
T  41945018 ggattacttacacatgaatagaagacacacaagcaacaagctg 41945060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 103 - 205
Target Start/End: Complemental strand, 55933653 - 55933549
Alignment:
Q  103 tttttggatagcaaaaccaattatcgaaaacataatattcatggacctatgagtcatgacattgttgtgcatgaccctttaaactct--gtagaaggtca 200  Q
    ||||||||| |||||| |||| |||| ||||| || ||||| ||||||| ||| ||| | |||||| || || |||||||  |||||  |||||||||||    
T  55933653 tttttggatggcaaaatcaatcatcgtaaacacaacattcacggacctaggagacataatattgttatgtataaccctttggactctatgtagaaggtca 55933554  T
Q  201 acaac 205  Q
    |||||    
T  55933553 acaac 55933549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 50 - 182
Target Start/End: Complemental strand, 50001172 - 50001040
Alignment:
Q  50 attaattacacatgaatagaagacaagcaagcaacaagctgagtcactaagactttttggatagcaaaaccaattatcgaaaacataatattcatggacc 149  Q
    |||| |||||||||||||| || |||||  ||||||||||| | | |||   |||||||||| |||||| ||||  ||| ||||| || ||| ||||| |    
T  50001172 attacttacacatgaataggaggcaagcgggcaacaagctgcgccgctagatctttttggatggcaaaatcaatcttcgtaaacacaacatttatggatc 50001073  T
Q  150 tatgagtcatgacattgttgtgcatgacccttt 182  Q
    || ||| ||| |||||| | ||||| |||||||    
T  50001072 taggagacataacattgctatgcataacccttt 50001040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 102 - 232
Target Start/End: Original strand, 53170425 - 53170558
Alignment:
Q  102 ctttttggatagcaaaaccaattatcgaaaacataatattcatggacctat--gagtcatgacattgttgtgcatgaccctttaaactct--gtagaagg 197  Q
    |||||| |||||||||| ||||  |||  |||| || ||||||| ||||||  ||| |||||||||| | ||||||||| ||| ||||||  ||||||||    
T  53170425 ctttttagatagcaaaatcaatcctcgtgaacacaacattcatg-acctataggagacatgacattgctatgcatgaccttttgaactctatgtagaagg 53170523  T
Q  198 tcaacaacatttggtgctaggaaaccaaaaatgtc 232  Q
    |||||| | | ||||||||| ||||| ||| ||||    
T  53170524 tcaacagcctctggtgctagcaaaccgaaagtgtc 53170558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 50 - 232
Target Start/End: Original strand, 102967 - 103151
Alignment:
Q  50 attaattacacatgaatagaagacaagcaagcaacaagctgagtcactaagactttttggatagcaaaaccaattatcgaaaacataatattcatggacc 149  Q
    |||| |||||| |||||||||| |||||  |||||||| || | | |||   |||||||||| |||||||||||  ||| ||||| || |||||||||||    
T  102967 attatttacacttgaatagaaggcaagcgggcaacaagttgcgccgctagacctttttggatggcaaaaccaatcctcgtaaacacaacattcatggacc 103066  T
Q  150 tatgagtcatgacattgttgtgcatgaccctttaaactc--tgtagaaggtcaacaacatttggtgctaggaaaccaaaaatgtc 232  Q
    || ||| || ||||||||| ||||||||| ||| | |||  ||||||||||||||| | | ||||||||||||||| ||| ||||    
T  103067 taggagacacgacattgttatgcatgaccttttgagctcgatgtagaaggtcaacagcctctggtgctaggaaaccgaaagtgtc 103151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 54; Significance: 4e-22; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 102 - 232
Target Start/End: Complemental strand, 37873832 - 37873700
Alignment:
Q  102 ctttttggatagcaaaaccaattatcgaaaacataatattcatggacctatgagtcatgacattgttgtgcatgaccctttaaactc--tgtagaaggtc 199  Q
    |||||| |||||||||| ||||  ||  ||||| || |||||| ||||||  ||||||||||||||| ||||||||||||| |||||  |||||||||||    
T  37873832 cttttttgatagcaaaatcaatcctcttaaacacaacattcatagacctagaagtcatgacattgttctgcatgaccctttgaactctatgtagaaggtc 37873733  T
Q  200 aacaacatttggtgctaggaaaccaaaaatgtc 232  Q
    |||||| | |||||||||||| |||||| ||||    
T  37873732 aacaacctctggtgctaggaagccaaaagtgtc 37873700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 50 - 203
Target Start/End: Complemental strand, 33692298 - 33692146
Alignment:
Q  50 attaattacacatgaatagaagacaagcaagcaacaagctgagtcactaagactttttggatagcaaaaccaattatcgaaaacataatattcatggacc 149  Q
    |||| |||||||||||||| || |||||| ||||||||||| | | |||   |||||||||| | ||||||||  |||| ||||| || ||||||| |||    
T  33692298 attacttacacatgaataggaggcaagcaggcaacaagctgcgccgctagatctttttggatggaaaaaccaa--atcgtaaacagaacattcatgaacc 33692201  T
Q  150 tatgagtcatgacattgttgtgcatgacccttt--aaactctgtagaaggtcaaca 203  Q
    |||||| ||| |||||||| ||||| |||||||  | ||| |||||||||||||||    
T  33692200 tatgagacataacattgttatgcat-accctttggacactatgtagaaggtcaaca 33692146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 102 - 232
Target Start/End: Original strand, 42921611 - 42921742
Alignment:
Q  102 ctttttggatagcaaaaccaattatcgaaaacataatattcatggacctatgagtcatgacattgttgtgcatgaccctttaaactct--gtagaaggtc 199  Q
    |||||||||| |||||||||||  | | ||||| |||||| |||||| || ||| |||||||||||| ||||||||| | | ||||||  |||||||| |    
T  42921611 ctttttggatggcaaaaccaatccttgtaaacacaatatt-atggacttaggagacatgacattgttatgcatgaccttctgaactctatgtagaaggcc 42921709  T
Q  200 aacaacatttggtgctaggaaaccaaaaatgtc 232  Q
    |||||| | ||||||||||||||| ||| ||||    
T  42921710 aacaacctctggtgctaggaaaccgaaagtgtc 42921742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 50 - 166
Target Start/End: Original strand, 35310309 - 35310425
Alignment:
Q  50 attaattacacatgaatagaagacaagcaagcaacaagctgagtcactaagactttttggatagcaaaaccaattatcgaaaacataatattcatggacc 149  Q
    |||| |||||||||||||| || |||||  ||||||||||| |||  |||  || ||||||| |||||||||||| ||| ||||| || |||||||||||    
T  35310309 attacttacacatgaataggaggcaagcgggcaacaagctgcgtcgttaaacctctttggatggcaaaaccaattctcgtaaacacaacattcatggacc 35310408  T
Q  150 tatgagtcatgacattg 166  Q
    || ||| ||| ||||||    
T  35310409 taggagacataacattg 35310425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 153 - 197
Target Start/End: Complemental strand, 3114283 - 3114239
Alignment:
Q  153 gagtcatgacattgttgtgcatgaccctttaaactctgtagaagg 197  Q
    |||| ||||||||||||||||||||||||| ||||||||||||||    
T  3114283 gagttatgacattgttgtgcatgaccctttgaactctgtagaagg 3114239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 103 - 216
Target Start/End: Complemental strand, 22188848 - 22188733
Alignment:
Q  103 tttttggatagcaaaaccaattatcgaaaacataatattcatggacctatgagtcatgacattgttgtgcatgaccctttaaactc--tgtagaaggtca 200  Q
    |||||||||  ||||||||||| ||| ||||| || ||||||| | ||| ||| ||||| |||||| ||||||||| ||| |||||  ||||||||||||    
T  22188848 tttttggatgacaaaaccaattctcgtaaacacaacattcatgaatctaggagacatgatattgttatgcatgaccttttgaactctatgtagaaggtca 22188749  T
Q  201 acaacatttggtgcta 216  Q
    ||| | | ||||||||    
T  22188748 acagcctctggtgcta 22188733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 103 - 221
Target Start/End: Complemental strand, 32269990 - 32269870
Alignment:
Q  103 tttttggatagcaaaaccaattatcgaaaacataatattcatggacctatgagtcatgacattgttgtgcatgaccctttaaact--ctgtagaaggtca 200  Q
    ||||||||| || ||| ||||  ||| ||||| || ||||||||||||| ||| |||||||||| | ||||||||| ||| ||||   || |||||||||    
T  32269990 tttttggatggcgaaatcaatcctcgtaaacacaacattcatggacctaggagacatgacattgctatgcatgaccttttgaacttcatgcagaaggtca 32269891  T
Q  201 acaacatttggtgctaggaaa 221  Q
    ||||| | | |||||||||||    
T  32269890 acaacctctagtgctaggaaa 32269870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 50 - 203
Target Start/End: Complemental strand, 13167156 - 13167001
Alignment:
Q  50 attaattacacatgaatagaagacaagcaagcaacaagctgagtcactaagactttttggatagcaaaaccaattatcgaaaacataatattcatggacc 149  Q
    ||||||||||||||||||| || ||||   ||||||||||| | | |||   ||||||||||| || || |||| |||| ||||  || |||||||||||    
T  13167156 attaattacacatgaataggaggcaagtgggcaacaagctgcgccgctagatctttttggataacagaatcaatcatcgtaaacccaacattcatggacc 13167057  T
Q  150 tatgagtcatgacattgttgtgcatgaccctttaaactc--tgtagaaggtcaaca 203  Q
    || ||| |||  ||||| | ||||| |||||||  ||||  |||||||||||||||    
T  13167056 taggagacataccattgctatgcataaccctttggactctatgtagaaggtcaaca 13167001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 186 - 232
Target Start/End: Original strand, 43129533 - 43129579
Alignment:
Q  186 ctctgtagaaggtcaacaacatttggtgctaggaaaccaaaaatgtc 232  Q
    |||||||||||||||| ||||| ||||| ||||||||| ||||||||    
T  43129533 ctctgtagaaggtcaaaaacatctggtgttaggaaaccgaaaatgtc 43129579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 103 - 173
Target Start/End: Original strand, 43349974 - 43350044
Alignment:
Q  103 tttttggatagcaaaaccaattatcgaaaacataatattcatggacctatgagtcatgacattgttgtgca 173  Q
    ||||| |||||||||| |||| || | ||||| || |||||| ||| || |||||||||||||||||||||    
T  43349974 tttttagatagcaaaatcaatcattgtaaacacaacattcattgacttaagagtcatgacattgttgtgca 43350044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 89
Target Start/End: Original strand, 35455834 - 35455874
Alignment:
Q  49 gattaattacacatgaatagaagacaagcaagcaacaagct 89  Q
    |||||||||||||||||||||||| || || ||||||||||    
T  35455834 gattaattacacatgaatagaagataaacatgcaacaagct 35455874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 53; Significance: 1e-21; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 130 - 227
Target Start/End: Original strand, 38731550 - 38731649
Alignment:
Q  130 aaacataatattcatggacctatgagtcatgacattgttgtgcatgaccctttaaactc--tgtagaaggtcaacaacatttggtgctaggaaaccaaaa 227  Q
    ||||| |||||||||||||||| ||||||||||||| |||||||||||||||| |||||  |||||||||| |||||| | |||||||| ||| ||||||    
T  38731550 aaacacaatattcatggacctaggagtcatgacattattgtgcatgaccctttgaactctatgtagaaggttaacaacctctggtgctaagaagccaaaa 38731649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 49 - 167
Target Start/End: Original strand, 30688417 - 30688535
Alignment:
Q  49 gattaattacacatgaatagaagacaagcaagcaacaagctgagtcactaagactttttggatagcaaaaccaattatcgaaaacataatattcatggac 148  Q
    ||||||||||||||||||||| | |||||  ||||||||||| | | ||| | ||||||||||| ||||||||||  ||| ||||| || ||||||||||    
T  30688417 gattaattacacatgaatagatggcaagcgggcaacaagctgcgccgctaggcctttttggataacaaaaccaatcctcgtaaacacaacattcatggac 30688516  T
Q  149 ctatgagtcatgacattgt 167  Q
    | | |||||||||||||||    
T  30688517 ccaggagtcatgacattgt 30688535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 103 - 220
Target Start/End: Original strand, 34644480 - 34644599
Alignment:
Q  103 tttttggatagcaaaaccaattatcgaaaacataatattcatggacctatgagtcatgacattgttgtgcatgaccctttaaactc--tgtagaaggtca 200  Q
    ||||||||| |||||| |||| |||| ||||| || ||||||||||||| ||| ||| |||||| | ||||| |||||||  ||||  ||||||||||||    
T  34644480 tttttggatggcaaaatcaatcatcgtaaacacaacattcatggacctaggagacataacattgatatgcataaccctttggactctatgtagaaggtca 34644579  T
Q  201 acaacatttggtgctaggaa 220  Q
    ||||| | || |||||||||    
T  34644580 acaacctctgatgctaggaa 34644599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 104 - 232
Target Start/End: Complemental strand, 50314815 - 50314686
Alignment:
Q  104 ttttggatagcaaaaccaattatcgaaaacataatattcatggacctatgagtcatgacattgttgtgcatgaccctttaaactc--tgtagaaggtcaa 201  Q
    ||||||||||||||| || | || | ||||| | ||||||||||| || ||||||||||||||||| | || ||||||| |||||  ||||||| |||||    
T  50314815 ttttggatagcaaaatcagtaatggtaaacacattattcatggac-taggagtcatgacattgttgcgtataaccctttgaactctatgtagaaagtcaa 50314717  T
Q  202 caacatttggtgctaggaaaccaaaaatgtc 232  Q
    |||||| | ||| |||||||  |||||||||    
T  50314716 caacatcttgtgttaggaaataaaaaatgtc 50314686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 96 - 223
Target Start/End: Original strand, 2898609 - 2898738
Alignment:
Q  96 ctaagactttttggatagcaaaaccaattatcgaaaacataatattcatggacctatgagtcatgacattgttgtgcatgaccctttaaactct--gtag 193  Q
    ||||| |||||||||| |||||| ||||  ||  ||||| || |||||||  | |||||| ||||| |||||| ||||||| | ||| ||||||  ||||    
T  2898609 ctaagcctttttggatggcaaaatcaatcctcttaaacacaacattcatgatcgtatgagacatgatattgttatgcatgatcttttgaactctatgtag 2898708  T
Q  194 aaggtcaacaacatttggtgctaggaaacc 223  Q
    |||||||||||| | |||||||||||||||    
T  2898709 aaggtcaacaacctctggtgctaggaaacc 2898738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 139 - 222
Target Start/End: Original strand, 21472953 - 21473038
Alignment:
Q  139 attcatggacctatgagtcatgacattgttgtgcatgaccctttaaactc--tgtagaaggtcaacaacatttggtgctaggaaac 222  Q
    ||||||||||||| ||| |||||||||| | ||||||||| ||| |||||  ||||||||||||||| | | ||||||||||||||    
T  21472953 attcatggacctaggagacatgacattgctatgcatgaccttttgaactctatgtagaaggtcaacagcctctggtgctaggaaac 21473038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 159 - 221
Target Start/End: Complemental strand, 4862126 - 4862062
Alignment:
Q  159 tgacattgttgtgcatgaccctttaaactct--gtagaaggtcaacaacatttggtgctaggaaa 221  Q
    |||||||||| ||||||||||||| ||||||  |||||||||||||||| ||||||| |||||||    
T  4862126 tgacattgttatgcatgaccctttgaactctatgtagaaggtcaacaacttttggtgttaggaaa 4862062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 50 - 232
Target Start/End: Complemental strand, 24177757 - 24177573
Alignment:
Q  50 attaattacacatgaatagaagacaagcaagcaacaagctgagtcactaagactttttggatagcaaaaccaattatcgaaaacataatattcatggacc 149  Q
    |||| |||||| ||||||||||||||||  |||||||||||   | |||   |||||||| | |||||||||||  |||  |||| || |||||||||||    
T  24177757 attatttacacttgaatagaagacaagcgggcaacaagctgcaccgctagacctttttggttggcaaaaccaatcctcgtgaacacaacattcatggacc 24177658  T
Q  150 tatgagtcatgacattgttgtgcatgaccctttaaactc--tgtagaaggtcaacaacatttggtgctaggaaaccaaaaatgtc 232  Q
    || |||  ||||||||| | ||||||||  ||| |||||  |||||||||| |||| | | || |||||||||||| ||| ||||    
T  24177657 taggagatatgacattgctatgcatgactttttgaactctatgtagaaggtaaacagcctctgatgctaggaaaccgaaactgtc 24177573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 157 - 232
Target Start/End: Complemental strand, 29169932 - 29169855
Alignment:
Q  157 catgacattgttgtgcatgaccctttaaactct--gtagaaggtcaacaacatttggtgctaggaaaccaaaaatgtc 232  Q
    |||||||||| ||||||||||| ||| ||||||  ||||||||| |||||| | ||||||||||||||| ||| ||||    
T  29169932 catgacattgctgtgcatgaccttttgaactctatgtagaaggttaacaacctctggtgctaggaaaccgaaagtgtc 29169855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 50 - 232
Target Start/End: Original strand, 22346756 - 22346940
Alignment:
Q  50 attaattacacatgaatagaagacaagcaagcaacaagctgagtcactaagactttttggatagcaaaaccaattatcgaaaacataatattcatggacc 149  Q
    |||| |||||| |||||||||| |||||   |||||||||| | | |||   |||||||||| ||||||| |||  |||  |||| || ||||||  |||    
T  22346756 attatttacacttgaatagaaggcaagcggacaacaagctgcgccgctagacctttttggatggcaaaactaatcctcgtgaacacaacattcataaacc 22346855  T
Q  150 tatgagtcatgacattgttgtgcatgaccctttaaactctgt--agaaggtcaacaacatttggtgctaggaaaccaaaaatgtc 232  Q
    || ||| |||||||||  | ||||||||| ||| ||||||||  |||||||||||||| | || | |||||||||| ||| ||||    
T  22346856 taggagacatgacatttctatgcatgaccttttgaactctgtgtagaaggtcaacaacctctgctactaggaaaccgaaagtgtc 22346940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 48 - 124
Target Start/End: Original strand, 18802914 - 18802989
Alignment:
Q  48 ggattaattacacatgaatagaagacaagcaagcaacaagctgagtcactaagactttttggatagcaaaaccaatt 124  Q
    ||||||||| |||||||||||||||||| ||  ||| |||||| ||| || ||||||||||||| |||||| |||||    
T  18802914 ggattaattgcacatgaatagaagacaaacagacaataagctgtgtcgct-agactttttggattgcaaaatcaatt 18802989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 102 - 220
Target Start/End: Original strand, 2764392 - 2764512
Alignment:
Q  102 ctttttggatagcaaaaccaattatcgaaaacataatattcatggacctatgagtcatgacattgttgtgcatgaccctttaaactct--gtagaaggtc 199  Q
    |||||||||| | |||| |||| |||| ||||| || ||| ||||||||| ||| ||| |||||| | ||||| |||||||  ||| |  ||||||||||    
T  2764392 ctttttggatggtaaaatcaatcatcgtaaacacaacatttatggacctaagagacataacattgatttgcataaccctttggactttatgtagaaggtc 2764491  T
Q  200 aacaacatttggtgctaggaa 220  Q
    |||||| | || |||||||||    
T  2764492 aacaacctctgatgctaggaa 2764512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 62 - 195
Target Start/End: Complemental strand, 11128488 - 11128355
Alignment:
Q  62 tgaatagaagacaagcaagcaacaagctgagtcactaagactttttggatagcaaaaccaattatcgaaaacataatattcatggacctatgagtcatga 161  Q
    |||||||||| ||| || |||| |||||| ||| | ||| | |||||||||| ||||| ||| || | ||||| |  ||| || |||||| ||| ||| |    
T  11128488 tgaatagaaggcaaacatgcaataagctgcgtccccaagtcattttggatagaaaaacaaatcattgtaaacacatcatttatagacctaggagacataa 11128389  T
Q  162 cattgttgtgcatgaccctttaaactctgtagaa 195  Q
    ||||| | ||||||||| ||||||||||| ||||    
T  11128388 cattgatatgcatgaccttttaaactctggagaa 11128355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 150 - 232
Target Start/End: Complemental strand, 20259943 - 20259859
Alignment:
Q  150 tatgagtcatgacattgttgtgcatgaccctttaaactct--gtagaaggtcaacaacatttggtgctaggaaaccaaaaatgtc 232  Q
    |||||| |||||||||  | ||||||||| ||| ||||||  |||||||||||||||| | |||||||| |||||| ||| ||||    
T  20259943 tatgagacatgacattactatgcatgaccttttgaactctatgtagaaggtcaacaacctctggtgctaagaaaccgaaagtgtc 20259859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 48 - 77
Target Start/End: Original strand, 50063807 - 50063836
Alignment:
Q  48 ggattaattacacatgaatagaagacaagc 77  Q
    ||||||||||||||||||||||||||||||    
T  50063807 ggattaattacacatgaatagaagacaagc 50063836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0148 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold0148
Description:

Target: scaffold0148; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 50 - 232
Target Start/End: Original strand, 33111 - 33295
Alignment:
Q  50 attaattacacatgaatagaagacaagcaagcaacaagctgagtcactaagactttttggatagcaaaaccaattatcgaaaacataatattcatggacc 149  Q
    |||| |||||| |||||||||| |||||| |||||||||||   | | ||| ||||||||||  ||||| ||||  ||| |||||  |  ||||||||||    
T  33111 attatttacacttgaatagaaggcaagcaggcaacaagctgcaccgccaagcctttttggatgacaaaatcaatcctcgtaaacacgacgttcatggacc 33210  T
Q  150 tatgagtcatgacattgttgtgcatgaccctttaaactct--gtagaaggtcaacaacatttggtgctaggaaaccaaaaatgtc 232  Q
    || ||| ||| | |||| | ||||||||| ||| ||||||  |||||||||||||||| | ||||| ||||||||| ||||||||    
T  33211 taggagacataaaattgctatgcatgaccttttgaactctatgtagaaggtcaacaacctctggtgttaggaaaccgaaaatgtc 33295  T

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Target: scaffold0490 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0490
Description:

Target: scaffold0490; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 139 - 222
Target Start/End: Original strand, 6284 - 6369
Alignment:
Q  139 attcatggacctatgagtcatgacattgttgtgcatgaccctttaaactc--tgtagaaggtcaacaacatttggtgctaggaaac 222  Q
    ||||||||||||| ||| |||||||||| | ||||||||| ||| |||||  ||||||||||||||| | | ||||||||||||||    
T  6284 attcatggacctaggagacatgacattgctatgcatgaccttttgaactctatgtagaaggtcaacagcctctggtgctaggaaac 6369  T

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Target: scaffold0470 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0470
Description:

Target: scaffold0470; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 102 - 165
Target Start/End: Original strand, 7516 - 7579
Alignment:
Q  102 ctttttggatagcaaaaccaattatcgaaaacataatattcatggacctatgagtcatgacatt 165  Q
    ||||||||||  ||||||||||  ||| |||||||| ||||||||||||||||| |||||||||    
T  7516 ctttttggatgacaaaaccaatactcgtaaacataacattcatggacctatgagacatgacatt 7579  T

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Target: scaffold0186 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0186
Description:

Target: scaffold0186; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 156 - 220
Target Start/End: Original strand, 10328 - 10393
Alignment:
Q  156 tcatgacattgttgtgcatgaccctttaaactct-gtagaaggtcaacaacatttggtgctaggaa 220  Q
    ||||||||||||| |||||| |||||| ||||||  ||||||||||||||| | ||||||||||||    
T  10328 tcatgacattgttatgcatggccctttcaactctattagaaggtcaacaacctctggtgctaggaa 10393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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