View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2915_low_1 (Length: 415)

Name: NF2915_low_1
Description: NF2915
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2915_low_1
NF2915_low_1
[»] chr1 (1 HSPs)
chr1 (90-380)||(43224045-43224338)


Alignment Details
Target: chr1 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 90 - 380
Target Start/End: Complemental strand, 43224338 - 43224045
Alignment:
Q  90 gagattaatggtaatgccattcataaaactctatatataccctacatgataaattatttttctttcttttattctattcggtatatttactgcattacga 189  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  43224338 gagattaatggtaatgccattcataaaactctatatataccctatatgataaattatttttctttcttttattctattcggtatatttactgcattaaga 43224239  T
Q  190 aaattctataaaaactccctacattaacacagaaaatttggtgagaattgtactattttcgaaggatagtaactctctatactagcagagtctaagtctt 289  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43224238 aaattctataaaaactccctacattaacacagaaaatttggtgagaattgtactattttcgaaggatagtaactctctatactagcagagtctaagtctt 43224139  T
Q  290 aggtaagttttctaatctctatattgttgcttgcacctttcattatgcttcttcttcnnnnnnn---cttgctttgatgtgccttccatttccc 380  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||          |||||||||||||||||||||||||||    
T  43224138 aggtaagttttctaatctctatattgttgcttgcacctttcattatgcttcttcttcttctttttttcttgctttgatgtgccttccatttccc 43224045  T

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