View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2915_low_3 (Length: 221)
Name: NF2915_low_3
Description: NF2915
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2915_low_3 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 160; Significance: 2e-85; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 2563995 - 2563765
Alignment:
| Q |
1 |
tgtacttcaagtatttgctttctccactggccttgtataaccaagcagcagcccataatagttcatccttttggtacacaac----------catatata |
90 |
Q |
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| T |
2563995 |
tgtacttcaagtacttgctttctccactggccttgtataaccaagcagcagcccataatagttcatccttttcatacacaattcaaaaatcacaaccata |
2563896 |
T |
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| Q |
91 |
aatgaatgatactaagaagttataattagtttgtaaatattctcttttccacaagctgtaatttcttacttggtaaccagagtacgagcagtagaatgga |
190 |
Q |
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| T |
2563895 |
aatgaatgatactaagaagttataactagtttgtaaatattctcttttccacaagctgtaatttcttacttggtaaccagagtacgagcagtagaatgga |
2563796 |
T |
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| Q |
191 |
caagaatctgtgtaggtgcctctatacttgt |
221 |
Q |
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| T |
2563795 |
caagaacctgtgtaggtgcctctatacttgt |
2563765 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 2573845 - 2573765
Alignment:
| Q |
1 |
tgtacttcaagtatttgctttctccactggccttgtataaccaagcagcagcccataatagttcatccttttggtacacaa |
81 |
Q |
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| T |
2573845 |
tgtacgtcaagtatttgctttccccactagccttgtatagccaagtagcagcccataataattcatccttttcatacacaa |
2573765 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 148 - 219
Target Start/End: Complemental strand, 2573687 - 2573616
Alignment:
| Q |
148 |
gtaatttcttacttggtaaccagagtacgagcagtagaatggacaagaatctgtgtaggtgcctctatactt |
219 |
Q |
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| T |
2573687 |
gtaatttcttacttggtaaccagagtatgagcagtagaatgggcaagaacccgagtaactgcctctatactt |
2573616 |
T |
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