View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2916_high_1 (Length: 507)
Name: NF2916_high_1
Description: NF2916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2916_high_1 |
 | |
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| [»] scaffold0411 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 451; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 451; E-Value: 0
Query Start/End: Original strand, 9 - 488
Target Start/End: Original strand, 50804717 - 50805196
Alignment:
| Q |
9 |
acatcatcaggacatcctacaatcatacataacatacattagtctcggcattgtggtcctacccaactccggggatttgtttctaccattgtgagcagag |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
50804717 |
acatcatcaggacatcctacaatcatacataacatacattagtctcggcattgtggtcctacccaactccggggatttgtttctaccattgtgagcagag |
50804816 |
T |
|
| Q |
109 |
actacacaatttacacagacaaaaaatactaacaaatttatgattgtctgttgtgttgttcgaagagtacataccactttcgacacaaatctcaatttca |
208 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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|
| T |
50804817 |
actacacgatttacacagacaaaaaatactaacaaatttatgattgtctgttgtgttgttcgaagagtacataccactttcaacacaaatctcaatttca |
50804916 |
T |
|
| Q |
209 |
ttcccctgaagagcagccctgaaatctccttccagaagtggtaacaaaaccacgtaggtagaaccatcttgccattaaaataatgtagacgaaaatgaga |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
50804917 |
ttcccctgaagagcagccctgaaatctccttccagaagtggtaacaaaaccacgtaggtagaaccatcttgccattaaaataatgtagacgaaaatgaga |
50805016 |
T |
|
| Q |
309 |
acatgctagacaaaaaacaaacaacagatgaagaagttatttgctaaaggagtattcaaatataaaactgtttaagttatatgaacccgtaaaggttacc |
408 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
50805017 |
acatgctagacaaaaaacaaacaacagatgaagaagttatttgctaaaggagtattcaaatataaaactgtttaagttatatgaacccgtaaaggttacc |
50805116 |
T |
|
| Q |
409 |
ttgtaagagaaccgttgcccgtcgtattctacttttggnnnnnnnctcagactctcaaaaacatctttgttagcctcata |
488 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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|
| T |
50805117 |
ttgtaagagaaccgttgcccgtcgtattctacttttggtttttttctcagactctcaaaaacatctttgttagcctcata |
50805196 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 451; E-Value: 0
Query Start/End: Original strand, 9 - 488
Target Start/End: Complemental strand, 50871160 - 50870681
Alignment:
| Q |
9 |
acatcatcaggacatcctacaatcatacataacatacattagtctcggcattgtggtcctacccaactccggggatttgtttctaccattgtgagcagag |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50871160 |
acatcatcaggacatcctacaatcatacataacatacattagtctcggcattgtggtcctacccaactccggggatttgtttctaccattgtgagcagag |
50871061 |
T |
|
| Q |
109 |
actacacaatttacacagacaaaaaatactaacaaatttatgattgtctgttgtgttgttcgaagagtacataccactttcgacacaaatctcaatttca |
208 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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|
| T |
50871060 |
actacacgatttacacagacaaaaaatactaacaaatttatgattgtctgttgtgttgttcgaagagtacataccactttcaacacaaatctcaatttca |
50870961 |
T |
|
| Q |
209 |
ttcccctgaagagcagccctgaaatctccttccagaagtggtaacaaaaccacgtaggtagaaccatcttgccattaaaataatgtagacgaaaatgaga |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
50870960 |
ttcccctgaagagcagccctgaaatctccttccagaagtggtaacaaaaccacgtaggtagaaccatcttgccattaaaataatgtagacgaaaatgaga |
50870861 |
T |
|
| Q |
309 |
acatgctagacaaaaaacaaacaacagatgaagaagttatttgctaaaggagtattcaaatataaaactgtttaagttatatgaacccgtaaaggttacc |
408 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
50870860 |
acatgctagacaaaaaacaaacaacagatgaagaagttatttgctaaaggagtattcaaatataaaactgtttaagttatatgaacccgtaaaggttacc |
50870761 |
T |
|
| Q |
409 |
ttgtaagagaaccgttgcccgtcgtattctacttttggnnnnnnnctcagactctcaaaaacatctttgttagcctcata |
488 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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|
| T |
50870760 |
ttgtaagagaaccgttgcccgtcgtattctacttttggtttttttctcagactctcaaaaacatctttgttagcctcata |
50870681 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 420; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 420; E-Value: 0
Query Start/End: Original strand, 13 - 488
Target Start/End: Complemental strand, 19057467 - 19056991
Alignment:
| Q |
13 |
catcaggacatcctacaatcatacataacatacattagtctcggcattgtggtcctacccaactccggggatttgtttctaccattgtgagcagagacta |
112 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
19057467 |
catcaggacatcctacaatcacacataacatacattagtcttggcattgtggtcctacctaactccggggatttgtttctaccattgtgagcagagaata |
19057368 |
T |
|
| Q |
113 |
cacaatttacacagacaaaaaatactaacaaatttatgattgtctgttgtgttgttcgaagagtacataccactttcgacacaaatctcaatttcattcc |
212 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
19057367 |
cacgatttacacagacaaaaaatactaacaaatttatgattgtctgttgtgttgttcgaagagtacataccactttcgacacaaatctcaatttcattcc |
19057268 |
T |
|
| Q |
213 |
cctgaagagcagccctgaaatctccttccagaagtggtaacaaaaccacgtaggtagaaccatcttgccattaaaataatgtagacgaaaatgagaacat |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19057267 |
cctgaagagcagccctgaaatctccttccagaagtggtaacaaaaccacgtaggtagaaccatcttgccattaaaataatgtagacgaaaatgagaacat |
19057168 |
T |
|
| Q |
313 |
gctagacaaaaaacaaacaacagatgaagaagttatttgctaaaggagtattcaaatataaaactgtttaagttatatgaacccgtaaaggttaccttgt |
412 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||| |
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|
| T |
19057167 |
gctagacaaaaaacaaacaacagatgaagaagttatttgctaaaggagtattcaaatataaaactgtttaagatatatgaacccgtaaaggataccttgt |
19057068 |
T |
|
| Q |
413 |
aagagaaccgttgcccgtcgtattctacttttgg-nnnnnnnctcagactctcaaaaacatctttgttagcctcata |
488 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
19057067 |
aagagaaccgttgcccgtcgtattctacttttggttttttttctcagactctcaaaaacatctttgttagcctcata |
19056991 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 106; Significance: 8e-53; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 106; E-Value: 8e-53
Query Start/End: Original strand, 315 - 483
Target Start/End: Complemental strand, 40705780 - 40705616
Alignment:
| Q |
315 |
tagacaaaaaacaaacaacagatgaagaagttatttgctaaaggagtattcaaatataaaactgtttaagttatatgaacccgtaaaggttaccttgtaa |
414 |
Q |
| |
|
|||||||||||||||||| ||||| ||||||||||||||||||||||| ||||||||||||||| ||| |||||||||||||||| |||||||||||| |
|
|
| T |
40705780 |
tagacaaaaaacaaacaa---atgaataagttatttgctaaaggagtatttaaatataaaactgtt-aagatatatgaacccgtaaaagttaccttgtaa |
40705685 |
T |
|
| Q |
415 |
gagaaccgttgcccgtcgtattctacttttggnnnnnnnctcagactctcaaaaacatctttgttagcc |
483 |
Q |
| |
|
|||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||| |
|
|
| T |
40705684 |
gagaaccgttgcccgtcgtattctacttttggatttttccttagactctcaaaaacatctttgttagcc |
40705616 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0411 (Bit Score: 99; Significance: 1e-48; HSPs: 1)
Name: scaffold0411
Description:
Target: scaffold0411; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 320 - 483
Target Start/End: Original strand, 11181 - 11343
Alignment:
| Q |
320 |
aaaaaacaaacaacagatgaagaagttatttgctaaaggagtattcaaatataaaactgtttaagttatatgaacccgtaaaggttaccttgtaagagaa |
419 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||| |||||||||| || ||||| |||||||||||||||||||||||||||||||| | |
|
|
| T |
11181 |
aaaaaaaaaacaacagatgaagaagttatttgctaaaggagtatttaaatataaaattg-ttaagatatatgaacccgtaaaggttaccttgtaagagta |
11279 |
T |
|
| Q |
420 |
ccgttgcccgtcgtattctacttttggnnnnnnnctcagactctcaaaaacatctttgttagcc |
483 |
Q |
| |
|
| ||| || |||||| ||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
11280 |
ctgtttcctgtcgtactctacttttgggtttttcctcagactctcaaaaacatctttgttagcc |
11343 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 170 - 279
Target Start/End: Complemental strand, 42349049 - 42348931
Alignment:
| Q |
170 |
gaagagtacataccactttcgacacaaatctcaatttcatt---------cccctgaagagcagccctgaaatctccttccagaagtggtaacaaaacca |
260 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||| ||| |||||||||||| |
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|
| T |
42349049 |
gaagagtgcataccactttcgacacaaatctcaatttcattttgatcattcccctgaagaacagccctgaaatctccttccaaaagaggtaacaaaaccg |
42348950 |
T |
|
| Q |
261 |
cgtaggtagaaccatcttg |
279 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
42348949 |
cgtaggtagaaccatcttg |
42348931 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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