View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2916_high_12 (Length: 316)
Name: NF2916_high_12
Description: NF2916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2916_high_12 |
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Alignment Details
Target: chr5 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 10396614 - 10396393
Alignment:
| Q |
1 |
aaaggtgagagggtggaagtactatcgcaggaagtgcatggttagctaagttaattacttgaacagttataaaaagaggtctcaatatcgattgaaaata |
100 |
Q |
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| T |
10396614 |
aaaggtgagagggtggaagtaccatcgcaggaagtgcatggttagctaagttaattacttgaacagttataaaaagaggtctcaatatcgattgaaaata |
10396515 |
T |
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| Q |
101 |
taaaaggaggatatgaagatgaaaatacaaggtagaaataaagagaaacatgttcaatagggtccataaagtgaagataccacattcgtgtctgtagcac |
200 |
Q |
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| T |
10396514 |
taaaaggaggatatgaagatgaaaatacaacgtagaaataaagagaaacatg-tcaatagggtccatcaagtgaagataccacattcgtgtctttagcac |
10396416 |
T |
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| Q |
201 |
gaaaatatttgtcgtgtcattta |
223 |
Q |
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| T |
10396415 |
gaaaatatttgttgtgtcattta |
10396393 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 83; Significance: 3e-39; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 77 - 223
Target Start/End: Complemental strand, 8913512 - 8913367
Alignment:
| Q |
77 |
aggtctcaatatcgattgaaaatataaaaggaggatatgaagatgaaaatacaaggtagaaataaagagaaacatgttcaatagggtccataaagtgaag |
176 |
Q |
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| T |
8913512 |
aggtctcaatatcgactgaaaatataaaaggaggatatgaagataaaaacacaacattgaaatagagagaaacatgttcgatagggtccaccaagtgaag |
8913413 |
T |
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| Q |
177 |
ataccacattcgtgtctgtagcacgaaaatatttgtcgtgtcattta |
223 |
Q |
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| T |
8913412 |
ataccacattcgcgtgtgtaacatgaaaata-ttgtcgtgtcattta |
8913367 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 8913732 - 8913661
Alignment:
| Q |
1 |
aaaggtgagagggtggaag---tactatcgcaggaagtgcatggttagctaagttaattacttgaacagtta |
69 |
Q |
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| T |
8913732 |
aaaggtgagagggtgaaagatgtaccattgcaggaagtgcatggctagctaacttatttacttgaactgtta |
8913661 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 72 - 149
Target Start/End: Complemental strand, 48069223 - 48069146
Alignment:
| Q |
72 |
aaaagaggtctcaatatcgattgaaaatataaaaggaggatatgaagatgaaaatacaaggtagaaataaagagaaac |
149 |
Q |
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| T |
48069223 |
aaaagaggtctcaataacgattgaaaatataaaaggatgatatgaagatgaaaacccaatatagaaatagagagaaac |
48069146 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 178 - 223
Target Start/End: Complemental strand, 48069126 - 48069081
Alignment:
| Q |
178 |
taccacattcgtgtctgtagcacgaaaatatttgtcgtgtcattta |
223 |
Q |
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| T |
48069126 |
taccacattcgtgtgtgtagcacgaaaatatttatcgtgtctttta |
48069081 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 240 - 295
Target Start/End: Original strand, 37243087 - 37243142
Alignment:
| Q |
240 |
aattcacttataaatgcaaaacttctttatcaaaatccagggattgtggatctaat |
295 |
Q |
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| T |
37243087 |
aattcacttataaatacaaaatttctttatcaaaatccaggggttgtggatctaat |
37243142 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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