View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2916_high_17 (Length: 264)
Name: NF2916_high_17
Description: NF2916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2916_high_17 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 12 - 264
Target Start/End: Original strand, 11312384 - 11312636
Alignment:
| Q |
12 |
aagaataatcatacctgtaccagcaatcaacagcttcatgattcaattttatgcaaatttgacaagcacttttactctcgttgatttgacgtggcttttc |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
11312384 |
aagaataatcatacctgtaccagcaatcaacagcttcatgattcggttttctgcaaatttgacaagcacttttactctcgttgttttgacgtggcttttc |
11312483 |
T |
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| Q |
112 |
tccctttgaactgtggttatgcttgacgaagacctcgttgttttgaggtccattatatcgacctactggagtaaaacctcttccttgagagttaaagtga |
211 |
Q |
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||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
11312484 |
tccctttgaactgtggttatgcttgacagagaactcgttgttttgaggtccattatatcgacctgctggagtaaaacctcttccttgagagttaaagtga |
11312583 |
T |
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| Q |
212 |
cctctaccgccaagtccgcttcgacctcgacctcttcctctttgactaaagaa |
264 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
11312584 |
cctctaccgccacgtccgcttcgacctcgacctcttcctctttgactaaagaa |
11312636 |
T |
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