View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2916_high_18 (Length: 258)
Name: NF2916_high_18
Description: NF2916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2916_high_18 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 258; Significance: 1e-144; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 1 - 258
Target Start/End: Original strand, 35489400 - 35489657
Alignment:
| Q |
1 |
aaaataaaattgactacatgaaaaatattatatcacatatcaattggtctatgccataggcattttcataaaaatacaatcaagcaatagccttctggcc |
100 |
Q |
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| T |
35489400 |
aaaataaaattgactacatgaaaaatattatatcacatatcaattggtctatgccataggcattttcataaaaatacaatcaagcaatagccttctggcc |
35489499 |
T |
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| Q |
101 |
atgatcaatgacaacattagaaacaaactttttccaaaaccaatgagacttccacactttattcatttcttcaatgggaacgttgtttgtctcaggaaga |
200 |
Q |
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| T |
35489500 |
atgatcaatgacaacattagaaacaaactttttccaaaaccaatgagacttccacactttattcatttcttcaatgggaacgttgtttgtctcaggaaga |
35489599 |
T |
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| Q |
201 |
aacaaggcaacgaaaattgacatgatgagcacaaagccagcaaagaagaagaaaagtc |
258 |
Q |
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| T |
35489600 |
aacaaggcaacgaaaattgacatgatgagcacaaagccagcaaagaagaagaaaagtc |
35489657 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 119 - 256
Target Start/End: Complemental strand, 14243099 - 14242962
Alignment:
| Q |
119 |
agaaacaaactttttccaaaaccaatgagacttccacactttattcatttcttcaatgggaacgttgtttgtctcaggaagaaacaaggcaacgaaaatt |
218 |
Q |
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| T |
14243099 |
agaaacatactttgtccaaaaccaatgcgacttccacaccctgttcatttcttcaattggaacatttttagtctcaggtaaaaggacagcaatgaaaatg |
14243000 |
T |
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| Q |
219 |
gacatgatgagcacaaagccagcaaagaagaagaaaag |
256 |
Q |
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| T |
14242999 |
gtcatgattgccacaaaaccagcaaagaaaaagaaaag |
14242962 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 127 - 256
Target Start/End: Complemental strand, 14233417 - 14233288
Alignment:
| Q |
127 |
actttttccaaaaccaatgagacttccacactttattcatttcttcaatgggaacgttgtttgtctcaggaagaaacaaggcaacgaaaattgacatgat |
226 |
Q |
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||||| ||||||||||||| ||||||||||| | |||||||||||||| ||||| || || |||||||| | || | |||| |||||| | |||||| |
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| T |
14233417 |
actttgtccaaaaccaatgcgacttccacaccctgttcatttcttcaattggaacatttttggtctcaggtaaaaggacagcaatgaaaatggtcatgat |
14233318 |
T |
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| Q |
227 |
gagcacaaagccagcaaagaagaagaaaag |
256 |
Q |
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| T |
14233317 |
tgccacaaaaccagcaaagaaaaagaaaag |
14233288 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 122 - 255
Target Start/End: Complemental strand, 51580862 - 51580729
Alignment:
| Q |
122 |
aacaaactttttccaaaaccaatgagacttccacactttattcatttcttcaatgggaacgttgtttgtctcaggaagaaacaaggcaacgaaaattgac |
221 |
Q |
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|||||| ||| ||||||||||||| || |||| |||||| | ||||||||||| || | || |||||||| || || || ||||||| || | | | |
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| T |
51580862 |
aacaaattttgtccaaaaccaatgtgatttccgtactttactaatttcttcaattgggagattctttgtctcggggaggaagaaggcaataaagacggtc |
51580763 |
T |
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| Q |
222 |
atgatgagcacaaagccagcaaagaagaagaaaa |
255 |
Q |
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||||| |||||||| ||||||||||||||||||| |
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| T |
51580762 |
atgataagcacaaaaccagcaaagaagaagaaaa |
51580729 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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