View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2916_high_19 (Length: 253)
Name: NF2916_high_19
Description: NF2916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2916_high_19 |
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| [»] scaffold0001 (1 HSPs) |
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Alignment Details
Target: scaffold0001 (Bit Score: 145; Significance: 2e-76; HSPs: 1)
Name: scaffold0001
Description:
Target: scaffold0001; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 30 - 235
Target Start/End: Complemental strand, 147118 - 146913
Alignment:
| Q |
30 |
atttgcactcaaaattttctttagcattctcaaacttgaagtgaacaannnnnnngcactcaaaatgtttattcccaatagatctaacaacaatcacata |
129 |
Q |
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||||||||||||||||||||||||| |||| ||||||| ||||||||| | | ||||||||||||||| |||||| ||||||||||||||||| |
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| T |
147118 |
atttgcactcaaaattttctttagctttctgaaacttgcagtgaacaatttatttacgcgcaaaatgtttattccgaatagagctaacaacaatcacata |
147019 |
T |
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| Q |
130 |
aactattcattcaaagcaacaaaaatcaaaactcaaacaaattagggttctgagatagcaagatcagatcctaacaacaatgaataggaacaacatgaga |
229 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||| |
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| T |
147018 |
aactattcattcaaagcaacaaaaatcaaaactcaaacaaattagggttctgagatagcaagatcagatcctaacaataatgaataagaacaacatgaga |
146919 |
T |
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| Q |
230 |
tttagc |
235 |
Q |
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|||||| |
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| T |
146918 |
tttagc |
146913 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 151 - 228
Target Start/End: Complemental strand, 26259158 - 26259081
Alignment:
| Q |
151 |
aaaatcaaaactcaaacaaattagggttctgagatagcaagatcagatcctaacaacaatgaataggaacaacatgag |
228 |
Q |
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|||| |||||| ||| |||||||||||||||||||| |||||||||||||||| ||||||| ||||||||||||||| |
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| T |
26259158 |
aaaaacaaaacgcaatcaaattagggttctgagatatgaagatcagatcctaaccacaatgagtaggaacaacatgag |
26259081 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 113 - 151
Target Start/End: Complemental strand, 26259230 - 26259192
Alignment:
| Q |
113 |
ctaacaacaatcacataaactattcattcaaagcaacaa |
151 |
Q |
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|||||||||||||||||||||||||||||| | |||||| |
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| T |
26259230 |
ctaacaacaatcacataaactattcattcacatcaacaa |
26259192 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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