View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2916_high_2 (Length: 490)
Name: NF2916_high_2
Description: NF2916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2916_high_2 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 463; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 463; E-Value: 0
Query Start/End: Original strand, 4 - 490
Target Start/End: Original strand, 42125443 - 42125929
Alignment:
| Q |
4 |
agatggacatcatcaccaattgacattaactcggggtttgaaactggattgattgctctaatggaacaatgcttaccaattttggcaccgataaggcgta |
103 |
Q |
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| T |
42125443 |
agatgaacaccatcaccaattaacattaactcggggtttgaaactggattgattgctctaatggaacaatgcttaccaattttggcaccaataaggcgta |
42125542 |
T |
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| Q |
104 |
agtatacgcagaaggcttctgttcctgagagaagctttgcaaatctaaggtggcaggaaagaatcaattggttttgaagccaggttttgaagtgtgtttg |
203 |
Q |
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| T |
42125543 |
agtatacgcagaaggcttctgttcctgagagaagctttgcaaatttaaggtggcaggaaagaatcatttggttttgaagccaggttttgaagtgtgtttg |
42125642 |
T |
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| Q |
204 |
cttttgacttttgagtaaacgagtcaaagaacatgtgagagaggtgagtatgagaccatgaagcaagtaagcacatgtaaatgaaatggcaaaggcaatg |
303 |
Q |
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| T |
42125643 |
cttttgacttttgagtaaacgagtcaaagaacatgtgagagaggtgagtatgagaccatgaagcaagtaagcacatgtaaatgaaatggcaaaggcaatg |
42125742 |
T |
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| Q |
304 |
ggatttgattgaacttcagaaaacatggtagcatatgcagtaatagtgaatggaatccaatgaaaggcaccacatatgcaaacaaatgaaaagctttgga |
403 |
Q |
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| T |
42125743 |
ggatttgattgaacttcagaaaacatggtagcatatgcagtaatagtgaatggaatccaatgaaaggcaccacatatgcaaacaaatgaaaagctttgga |
42125842 |
T |
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| Q |
404 |
ttgaagcaggtttttggaagaaccatgtatacatgaagtaagtaatagctgcagcaagggaactaacaaaggcaacaagataaatcc |
490 |
Q |
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| T |
42125843 |
ttgaagcaggtttttggaagaaccatgtatacatgaagtaagtaatagctgcagcaagggaactaacaaaggcaacaagataaatcc |
42125929 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 115; Significance: 3e-58; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 3 - 396
Target Start/End: Original strand, 24928738 - 24929134
Alignment:
| Q |
3 |
gagatggacatcatcaccaattgacattaactcggggtttgaaactggattgattgctctaatggaacaatgcttaccaattttggcaccgataaggcgt |
102 |
Q |
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| T |
24928738 |
gagatggacaccggcaccaattgacattagctctggatttgaaactgggttgatggctcggatggagcaatgcttgccaatttttgcgcctaaaaggcgc |
24928837 |
T |
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| Q |
103 |
aagtatacgcagaaggcttctgttcctgagagaagctttgcaaatctaaggtggcaggaaagaatcaattggttttgaagccaggttttgaagtgtgttt |
202 |
Q |
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| T |
24928838 |
aaatatacgcagaaggcttctgttcctgagagaagcttagcacatctaaggtggcaggagatgtttaatcgacattgaagccaggttttgaatttagttt |
24928937 |
T |
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| Q |
203 |
gcttttg---acttttgagtaaacgagtcaaagaacatgtgagagaggtgagtatgagaccatgaagcaagtaagcacatgtaaatgaaatggcaaaggc |
299 |
Q |
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| T |
24928938 |
gtttttggttatgtatgaggagacgagtaaaaacagcggtgagagcgatgagtattagaccgtgaagcaagtaggcgatggtaaatgtaatggcaaaggt |
24929037 |
T |
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| Q |
300 |
aatgggatttgattgaacttcagaaaacatggtagcatatgcagtaatagtgaatggaatccaatgaaaggcaccacatatgcaaacaaatgaaaag |
396 |
Q |
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| T |
24929038 |
gatggggtttgatgggacttcagaaaacatggtagcatatgcaatgacggtaaatgggatccagtgaaaagcaccacatatgcaaacaaatgaaaag |
24929134 |
T |
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