View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2916_high_3 (Length: 472)
Name: NF2916_high_3
Description: NF2916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2916_high_3 |
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Alignment Details
Target: chr8 (Bit Score: 211; Significance: 1e-115; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 241 - 455
Target Start/End: Complemental strand, 6640531 - 6640317
Alignment:
| Q |
241 |
gaagaaacttggaaaactctagcattcataagccttgttgcatcgggtatgagctctttcaatgtacccatcttctcattctgcagagcgcagacatctg |
340 |
Q |
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| T |
6640531 |
gaagaaacttggaaaactctagcattcataagccttgttgcatcgggtatgagctctttcaatgtacccatcttctcattctgcagagcgcagagatctg |
6640432 |
T |
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| Q |
341 |
caagctttcaacttgatcgagtaataaattcaaaagttaaaagtgtagagttaataattggggaaaaccaaggacaaacaagaaaccaacatcacaaatt |
440 |
Q |
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| T |
6640431 |
caagctttcaacttgatcgagtaataaattcaaaagttaaaagtgtagagttaataattggggaaaaccaaggacaaacaagaaaccaacatcacaaatt |
6640332 |
T |
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| Q |
441 |
aaatatcatagatct |
455 |
Q |
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| T |
6640331 |
aaatatcatagatct |
6640317 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 133; E-Value: 6e-69
Query Start/End: Original strand, 12 - 176
Target Start/End: Complemental strand, 6640751 - 6640596
Alignment:
| Q |
12 |
atgaaggatgagatggatcttaacagaggtagatgtgactgacattgtgaaaaagactccataaattgctgaaactgctgaaacacgactcctcttctga |
111 |
Q |
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| T |
6640751 |
atgaaggatgagatggatcttaacagaggtagatgtgactgacattgtgaaaaagactccataaattgctgaaac---------acgactcctcttctga |
6640661 |
T |
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| Q |
112 |
tgcatgaaaaagctcctcatgacggcatcatcaagcatgtaagataatttatccgtctataagac |
176 |
Q |
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| T |
6640660 |
tgcatgaaaaagctcctcatgacggcatcatcaagcatgtaagataatttatccgtctataagac |
6640596 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 37 - 79
Target Start/End: Original strand, 8730411 - 8730453
Alignment:
| Q |
37 |
gaggtagatgtgactgacattgtgaaaaagactccataaattg |
79 |
Q |
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| T |
8730411 |
gaggtagatgtgaatgacctggtgaaaaagactccataaattg |
8730453 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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