View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2916_high_5 (Length: 419)
Name: NF2916_high_5
Description: NF2916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2916_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 394; Significance: 0; HSPs: 8)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 1 - 414
Target Start/End: Complemental strand, 47713279 - 47712866
Alignment:
| Q |
1 |
caaaaagaagcaattggttggtatgaggactacatgttgcgttactcaaaccgatcaatatttggcattcttgaatggtcaccaaagttttatatgtcga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47713279 |
caaaaagaagcaattggttggtatgaggactacatgttgcgttactcaaaccaatcaatatttggcattcttgaatggtcaccaaagttttatatgtcga |
47713180 |
T |
|
| Q |
101 |
acccgaacaatgtaaccgaggtggatctatttaatcgagttcttggaaacttgatgaggaaactaaaagaaatagctgcatcaagtgattctcgtcttaa |
200 |
Q |
| |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||| |
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| T |
47713179 |
acccgaacaatgtaaccgaggtggatccatttaatcgagttcttggaaacttgatgaggaaactgagagaaatagctgcatcaagtgattctcgtcttaa |
47713080 |
T |
|
| Q |
201 |
gtttgctgcggataatgcaactgatgtgaatttgaattttcaaaccatatatggtcttgtgcagtgtacacctgatttgtcagagcaagattgcaatgat |
300 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47713079 |
gtttgctgcggataatgcaactgatgtgaatttgaattttcaaaccatatatggtcttgtgcagtgtacacctgatttgtcagagcaagattgcaatgat |
47712980 |
T |
|
| Q |
301 |
tgtttagagtttgctatatcagaaattccaatttactgttataacaagattggttgtagagttgtcaaaccaagttgtaatattagatatgaagtctatc |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47712979 |
tgtttagagtttgctatatcagaaattccaatttactgttataacaagattggttgtagagttgtcaaaccaagttgtaatattagatatgaagtctatc |
47712880 |
T |
|
| Q |
401 |
gcttctctgctcct |
414 |
Q |
| |
|
||||||||| |||| |
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|
| T |
47712879 |
gcttctctgatcct |
47712866 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 1 - 393
Target Start/End: Complemental strand, 47760194 - 47759802
Alignment:
| Q |
1 |
caaaaagaagcaattggttggtatgaggactacatgttgcgttactcaaaccgatcaatatttggcattcttgaatggtcaccaaagttttatatgtcga |
100 |
Q |
| |
|
|||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||| ||| || | ||| | ||||||||||||||||||| || |
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|
| T |
47760194 |
caaaaagaagcaattggttggtatgataactgcatgttgcgttactcaaaccgatcaatattcggcgttatggaaggttcaccaaagttttatatgtgga |
47760095 |
T |
|
| Q |
101 |
acccgaacaatgtaaccgaggtggatctatttaatcgagttcttggaaacttgatgaggaaactaaaagaaatagctgcatcaagtgattctcgtcttaa |
200 |
Q |
| |
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|| | |||||||| |||||||||| |||||| | ||||||||| ||||||||||||||||| ||||| | ||||||||||||||||||||||| ||| |
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| T |
47760094 |
acatatataatgtaacagaggtggatcaatttaaccaagttcttgggaacttgatgaggaaactgaaagagaaagctgcatcaagtgattctcgtcgtaa |
47759995 |
T |
|
| Q |
201 |
gtttgctgcggataatgcaactgatgtgaatttgaattttcaaaccatatatggtcttgtgcagtgtacacctgatttgtcagagcaagattgcaatgat |
300 |
Q |
| |
|
|||||| | ||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||| || |
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|
| T |
47759994 |
atttgctacagataatgcaactgatgtaaatttgaattttcaaaccatatatggtcttgttcagtgcacacctgatttgtcagagcaagattgcaataat |
47759895 |
T |
|
| Q |
301 |
tgtttagagtttgctatatcagaaattccaatttactgttataacaagattggttgtagagttgtcaaaccaagttgtaatattagatatgaa |
393 |
Q |
| |
|
|||||||| |||||| ||||| ||||||| || ||| |||||||||||||| |||||||| ||||||||||||||||||| ||||||||| |
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|
| T |
47759894 |
tgtttagatggtgctatctcagatattccaagttgttgtaataacaagattggtggtagagttctcaaaccaagttgtaatatcagatatgaa |
47759802 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 1 - 393
Target Start/End: Complemental strand, 47745862 - 47745479
Alignment:
| Q |
1 |
caaaaagaagcaattggttggtatgaggactacatgttgcgttactcaaaccgatcaatatttggcattcttgaatggtcaccaaagttttatatgtcga |
100 |
Q |
| |
|
||||||||||||||| |||||||||| ||| ||||||||||||||||||||||||||||||||||||| | || ||| | ||||| || || |
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|
| T |
47745862 |
caaaaagaagcaattagttggtatgataactgcatgttgcgttactcaaaccgatcaatatttggcattatggatacttcattttcatattataagtgga |
47745763 |
T |
|
| Q |
101 |
acccgaacaatgtaaccgaggtggatctatttaatcgagttcttggaaacttgatgaggaaactaaaagaaatagctgcatcaagtgattctcgtcttaa |
200 |
Q |
| |
|
|| | ||||||||||| |||| || |||||||| ||||||||| ||||||||||||||||| || ||||||||||||||| |||||||||||| ||| |
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|
| T |
47745762 |
acaatagaaatgtaaccgatgtggctcaatttaatcaagttcttgggaacttgatgaggaaactcaatgaaatagctgcatcaggtgattctcgtcgtaa |
47745663 |
T |
|
| Q |
201 |
gtttgctgcggataatgcaactgatgtgaatttgaattttcaaaccatatatggtcttgtgcagtgtacacctgatttgtcagagcaagattgcaatgat |
300 |
Q |
| |
|
||||||| | | |||||||||| ||||||||| |||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||| |
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|
| T |
47745662 |
gtttgctaccgctaatgcaact---------ttgaattttgaaaccatatatggtcttgtgcagtgtacacctgacttgtcaggacaagattgcaatgat |
47745572 |
T |
|
| Q |
301 |
tgtttagagtttgctatatcagaaattccaatttactgttataacaagattggttgtagagttgtcaaaccaagttgtaatattagatatgaa |
393 |
Q |
| |
|
||||||||| |||||| ||||||| ||||| || | |||||||||||||||| |||||||| |||||| |||||||||||||||||||||| |
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|
| T |
47745571 |
tgtttagagcgtgctatttcagaaactccaagttttttttataacaagattggtggtagagttctcaaactaagttgtaatattagatatgaa |
47745479 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 1 - 399
Target Start/End: Complemental strand, 47718073 - 47717684
Alignment:
| Q |
1 |
caaaaagaagcaattggttggtatgaggactacatgttgcgttactcaaaccgatcaatatttggcattcttgaatggtcaccaaagttttatatgtcga |
100 |
Q |
| |
|
||||||||||| ||||||||||||| |||| |||||||||||||||||||||||||||||| ||| || | ||| ||||| | || | || || |
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|
| T |
47718073 |
caaaaagaagcgattggttggtatgttgactgcatgttgcgttactcaaaccgatcaatattcggcgttatggaagcttcaccttcatatttaaagtgga |
47717974 |
T |
|
| Q |
101 |
acccgaacaatgtaaccgaggtggatctatttaatcgagttcttggaaacttgatgaggaaactaaaagaaatagctgcatcaagtgattctcgtcttaa |
200 |
Q |
| |
|
| ||| |||| |||||||||||||| |||||||| ||||||||| ||||||||||||||||| ||||||||||| ||||||||||||||||||| ||| |
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|
| T |
47717973 |
ccttgaaaaatgcaaccgaggtggatcaatttaatcaagttcttgggaacttgatgaggaaactcaaagaaatagcagcatcaagtgattctcgtcgtaa |
47717874 |
T |
|
| Q |
201 |
gtttgctgcggataatgcaactgatgtgaatttgaattttcaaaccatatatggtcttgtgcagtgtacacctgatttgtcagagcaagattgcaatgat |
300 |
Q |
| |
|
||||||| | | |||||||||| ||||||||| |||||| |||||||||||||||||||||||||||||| ||| ||||||||||||||||| |
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|
| T |
47717873 |
gtttgctaccgctaatgcaact---------ttgaattttgaaaccacatatggtcttgtgcagtgtacacctgatttatcacagcaagattgcaatgat |
47717783 |
T |
|
| Q |
301 |
tgtttagagtttgctatatcagaaattccaatttactgttataacaagattggttgtagagttgtcaaaccaagttgtaatattagatatgaagtctat |
399 |
Q |
| |
|
||||||||| |||||| ||||||||||| ||||| | | |||||||| |||| ||| |||| ||||||||||||| ||||||||| ||||| ||||| |
|
|
| T |
47717782 |
tgtttagagcgtgctatttcagaaattcctatttattttaataacaaggttggcggtatagttctcaaaccaagttgcaatattagacatgaaatctat |
47717684 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 341 - 393
Target Start/End: Complemental strand, 47704941 - 47704889
Alignment:
| Q |
341 |
ataacaagattggttgtagagttgtcaaaccaagttgtaatattagatatgaa |
393 |
Q |
| |
|
|||||||||||||| | |||||| ||||||||||||| ||||||||||||||| |
|
|
| T |
47704941 |
ataacaagattggtggaagagttatcaaaccaagttgcaatattagatatgaa |
47704889 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 240 - 281
Target Start/End: Original strand, 47811738 - 47811779
Alignment:
| Q |
240 |
tcaaaccatatatggtcttgtgcagtgtacacctgatttgtc |
281 |
Q |
| |
|
|||||| ||| |||||||||| |||||||||||||||||||| |
|
|
| T |
47811738 |
tcaaacaataaatggtcttgttcagtgtacacctgatttgtc |
47811779 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 33 - 65
Target Start/End: Original strand, 6521779 - 6521811
Alignment:
| Q |
33 |
catgttgcgttactcaaaccgatcaatatttgg |
65 |
Q |
| |
|
||||||||||||||||||||| ||||||||||| |
|
|
| T |
6521779 |
catgttgcgttactcaaaccgttcaatatttgg |
6521811 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 241 - 281
Target Start/End: Original strand, 6521987 - 6522027
Alignment:
| Q |
241 |
caaaccatatatggtcttgtgcagtgtacacctgatttgtc |
281 |
Q |
| |
|
|||||||||||||||||||| || || |||||||||||||| |
|
|
| T |
6521987 |
caaaccatatatggtcttgttcaatgcacacctgatttgtc |
6522027 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 3 - 65
Target Start/End: Complemental strand, 28875897 - 28875835
Alignment:
| Q |
3 |
aaaagaagcaattggttggtatgaggactacatgttgcgttactcaaaccgatcaatatttgg |
65 |
Q |
| |
|
||||||||||||||||||| ||| ||| |||| |||||||||||| ||| ||||||||||| |
|
|
| T |
28875897 |
aaaagaagcaattggttggattgacaactgcatgctgcgttactcaagccggtcaatatttgg |
28875835 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 348 - 393
Target Start/End: Complemental strand, 28830976 - 28830931
Alignment:
| Q |
348 |
gattggttgtagagttgtcaaaccaagttgtaatattagatatgaa |
393 |
Q |
| |
|
||||||| ||||||| | ||||||||||||||||||||||||||| |
|
|
| T |
28830976 |
gattggtgctagagttatgaaaccaagttgtaatattagatatgaa |
28830931 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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