View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2916_high_8 (Length: 400)
Name: NF2916_high_8
Description: NF2916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2916_high_8 |
 | |
|
| [»] chr2 (1 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 374; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 19 - 400
Target Start/End: Original strand, 42125548 - 42125929
Alignment:
| Q |
19 |
acgcagaaggcttctgttcctgagagaagctttgcaaatctaaggtggcaggaaagaatcaattggttttgaagccaggttttgaagtgtgtttgctttt |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42125548 |
acgcagaaggcttctgttcctgagagaagctttgcaaatttaaggtggcaggaaagaatcatttggttttgaagccaggttttgaagtgtgtttgctttt |
42125647 |
T |
|
| Q |
119 |
gacttttgagtaaacgagtcaaagaacatgtgagagaggtgagtatgagaccatgaagcaagtaagcacatgtaaatgaaatggcaaaggcaatgggatt |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42125648 |
gacttttgagtaaacgagtcaaagaacatgtgagagaggtgagtatgagaccatgaagcaagtaagcacatgtaaatgaaatggcaaaggcaatgggatt |
42125747 |
T |
|
| Q |
219 |
tgattgaacttcagaaaacatggtagcatatgcagtaatagtgaatggaatccaatgaaaggcaccacatatgcaaacaaatgaaaagctttggattgaa |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42125748 |
tgattgaacttcagaaaacatggtagcatatgcagtaatagtgaatggaatccaatgaaaggcaccacatatgcaaacaaatgaaaagctttggattgaa |
42125847 |
T |
|
| Q |
319 |
gcaggtttttggaagaaccatgtatacatgaagtaagtaatagctgcagcaagggaactaacaaaggcaacaagataaatcc |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42125848 |
gcaggtttttggaagaaccatgtatacatgaagtaagtaatagctgcagcaagggaactaacaaaggcaacaagataaatcc |
42125929 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 81; Significance: 5e-38; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 19 - 306
Target Start/End: Original strand, 24928844 - 24929134
Alignment:
| Q |
19 |
acgcagaaggcttctgttcctgagagaagctttgcaaatctaaggtggcaggaaagaatcaattggttttgaagccaggttttgaagtgtgtttgctttt |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||| |||||||||||||||| | | ||| | |||||||||||||||||| | ||||| |||| |
|
|
| T |
24928844 |
acgcagaaggcttctgttcctgagagaagcttagcacatctaaggtggcaggagatgtttaatcgacattgaagccaggttttgaatttagtttgttttt |
24928943 |
T |
|
| Q |
119 |
gacttt---tgagtaaacgagtcaaagaacatgtgagagaggtgagtatgagaccatgaagcaagtaagcacatgtaaatgaaatggcaaaggcaatggg |
215 |
Q |
| |
|
| | | |||| | |||||| ||| | ||||||| | ||||||| ||||| ||||||||||| || ||||||| ||||||||||| ||||| |
|
|
| T |
24928944 |
ggttatgtatgaggagacgagtaaaaacagcggtgagagcgatgagtattagaccgtgaagcaagtaggcgatggtaaatgtaatggcaaaggtgatggg |
24929043 |
T |
|
| Q |
216 |
atttgattgaacttcagaaaacatggtagcatatgcagtaatagtgaatggaatccaatgaaaggcaccacatatgcaaacaaatgaaaag |
306 |
Q |
| |
|
|||||| | ||||||||||||||||||||||||||| | | || ||||| ||||| ||||| ||||||||||||||||||||||||||| |
|
|
| T |
24929044 |
gtttgatgggacttcagaaaacatggtagcatatgcaatgacggtaaatgggatccagtgaaaagcaccacatatgcaaacaaatgaaaag |
24929134 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University