View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2916_low_1 (Length: 593)
Name: NF2916_low_1
Description: NF2916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2916_low_1 |
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| [»] scaffold0028 (1 HSPs) |
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Alignment Details
Target: scaffold0028 (Bit Score: 522; Significance: 0; HSPs: 1)
Name: scaffold0028
Description:
Target: scaffold0028; HSP #1
Raw Score: 522; E-Value: 0
Query Start/End: Original strand, 8 - 577
Target Start/End: Complemental strand, 118106 - 117537
Alignment:
| Q |
8 |
acatcatcatttcatctataatcatattaattataacttacactgttggacaggaacaccaaaaatatttctcaagacattgttgtacaattgcgcaaaa |
107 |
Q |
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| T |
118106 |
acataatcatttcatctataatcatattaattataatttatactgttggacaagaacaccaaaaatatttctcaagacattgttgtacaattgtgcaaaa |
118007 |
T |
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| Q |
108 |
tgttggatgaatttaatgttcatgcaaagccattcaggatggcacgtgatattttaaaaggaggacatattcatgatttgaaaatcaaacttatatcaga |
207 |
Q |
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| T |
118006 |
tgctagatgaatttaatgttcatgcaaagtcattcaggatggcacgtgatattttaaaaggaggacacattcatgatttgaaaatcaaacttatatcaga |
117907 |
T |
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| Q |
208 |
aaggaaatctgatggaaggatttacaatgaaccgacagtatcagaagttgctgctttcatagtaggtgatgttgatgcggccaataaaagagatatcatt |
307 |
Q |
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| T |
117906 |
aaggaaatctgatggaaggatttacaatgaaccgacagtatcagaagttgctgctttcatagtaggtgatgttgatgcggccgataaaagagatatcatt |
117807 |
T |
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| Q |
308 |
ctgcaccaaactaatggtcaactccagagaattgatgagttccacgctgcttatttgagttaccaatatccactaatattcccctatggtgaagatggtt |
407 |
Q |
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| T |
117806 |
ctgcaccaaactaatggtcaactccagagaattgatgagttccacgctgcttatttgaggtaccaatatccactaatattcccctatggtgaagatggtt |
117707 |
T |
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| Q |
408 |
acagagatggtatattgcataaatacagagctgaggtgaaagtcaccaagaaaaatcgtctcactataaaagaatggttctcattcaggattcaaagcag |
507 |
Q |
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| T |
117706 |
acagagatggtatattgcataaatacagagctgaggtgaaagtcaccaagaaaaatcgtctcactataaaagaatggttctcattcaggattcaaagcag |
117607 |
T |
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| Q |
508 |
aaatggagaggctagaactctcctttgctgtaggagattattacaccaattcatggttgatggttttaca |
577 |
Q |
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| T |
117606 |
aaatggagaggctagaactctcctttgttgtaggagattattacaccaattcatggttgatggttttaca |
117537 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 248; Significance: 1e-137; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 57 - 577
Target Start/End: Complemental strand, 22071977 - 22071455
Alignment:
| Q |
57 |
acaggaacaccaaaaatatttctcaagacattgttgtacaattgcgcaaaatgttggatgaatttaatgttcatgcaaagccattcaggatggcacgtga |
156 |
Q |
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| T |
22071977 |
acaggaataccaaaaatatatctgaagacattgttgtacgattgtgcaaaatgttggatgagcataatgttcatgcaaagtctttcaggatggcacgtga |
22071878 |
T |
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| Q |
157 |
tattttaaaaggaggacatattcatgatttgaaaatcaaacttatatcagaaaggaaatctgatggaaggatttacaatgaaccgacagtatcagaagtt |
256 |
Q |
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| T |
22071877 |
tatcttaaagggaggacacatgaatgatttgaaattaagacttatatcggaaagtaaatctgatgataggatttacaatgaacctacggtctccgaagtt |
22071778 |
T |
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| Q |
257 |
gctgctttcatagtaggtgatgttgatgcggccaataaaagagatatcattctgcaccaaactaatggtcaactccagagaattgatgagttccacgctg |
356 |
Q |
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| T |
22071777 |
gctgctttcatagtaggtgatgttgatactgccgataaaagagatatcattttgcatcaaactaatggtcagctccaaatgattgatgaatttcatgctg |
22071678 |
T |
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| Q |
357 |
cttatttgagttaccaatatccactaatattcccctatggtgaagatggttacagagatggtatattgcataaatacagagctgaggtgaaagtcac--c |
454 |
Q |
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| T |
22071677 |
catatttaagttaccagtatcccttgattttcccttatggtgaagatggttatagagatggtatattgcataagtatagagctgaagtgatagtcacaaa |
22071578 |
T |
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| Q |
455 |
aagaaaaatcgtctcactataaaagaatggttctcattcaggattcaaagcagaaatggagaggctagaactctcctttgctgtaggagattattacacc |
554 |
Q |
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| T |
22071577 |
aaaaaaaatcgtctcattataaaagagtggttttcattccgcattcaaagcaggaaaggagaggctcggactctcctgtgtagtaggagattgttacacc |
22071478 |
T |
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| Q |
555 |
aattcatggttgatggttttaca |
577 |
Q |
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| T |
22071477 |
aattcatggttgatggttttaca |
22071455 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 216 - 282
Target Start/End: Original strand, 26223955 - 26224021
Alignment:
| Q |
216 |
ctgatggaaggatttacaatgaaccgacagtatcagaagttgctgctttcatagtaggtgatgttga |
282 |
Q |
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| T |
26223955 |
ctgatggaaggatttataatcaacctactgtctccgaagtagcagctttgatagtaggtgatgttga |
26224021 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 216 - 282
Target Start/End: Original strand, 33543519 - 33543585
Alignment:
| Q |
216 |
ctgatggaaggatttacaatgaaccgacagtatcagaagttgctgctttcatagtaggtgatgttga |
282 |
Q |
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| T |
33543519 |
ctgatggaaggatttataatcaacctactgtctctgaagtagcagctttgatagtaggtgatgttga |
33543585 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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