View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2916_low_10 (Length: 400)
Name: NF2916_low_10
Description: NF2916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2916_low_10 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 374; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 19 - 400
Target Start/End: Original strand, 42125548 - 42125929
Alignment:
| Q |
19 |
acgcagaaggcttctgttcctgagagaagctttgcaaatctaaggtggcaggaaagaatcaattggttttgaagccaggttttgaagtgtgtttgctttt |
118 |
Q |
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| T |
42125548 |
acgcagaaggcttctgttcctgagagaagctttgcaaatttaaggtggcaggaaagaatcatttggttttgaagccaggttttgaagtgtgtttgctttt |
42125647 |
T |
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| Q |
119 |
gacttttgagtaaacgagtcaaagaacatgtgagagaggtgagtatgagaccatgaagcaagtaagcacatgtaaatgaaatggcaaaggcaatgggatt |
218 |
Q |
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| T |
42125648 |
gacttttgagtaaacgagtcaaagaacatgtgagagaggtgagtatgagaccatgaagcaagtaagcacatgtaaatgaaatggcaaaggcaatgggatt |
42125747 |
T |
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| Q |
219 |
tgattgaacttcagaaaacatggtagcatatgcagtaatagtgaatggaatccaatgaaaggcaccacatatgcaaacaaatgaaaagctttggattgaa |
318 |
Q |
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| T |
42125748 |
tgattgaacttcagaaaacatggtagcatatgcagtaatagtgaatggaatccaatgaaaggcaccacatatgcaaacaaatgaaaagctttggattgaa |
42125847 |
T |
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| Q |
319 |
gcaggtttttggaagaaccatgtatacatgaagtaagtaatagctgcagcaagggaactaacaaaggcaacaagataaatcc |
400 |
Q |
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| T |
42125848 |
gcaggtttttggaagaaccatgtatacatgaagtaagtaatagctgcagcaagggaactaacaaaggcaacaagataaatcc |
42125929 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 81; Significance: 5e-38; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 19 - 306
Target Start/End: Original strand, 24928844 - 24929134
Alignment:
| Q |
19 |
acgcagaaggcttctgttcctgagagaagctttgcaaatctaaggtggcaggaaagaatcaattggttttgaagccaggttttgaagtgtgtttgctttt |
118 |
Q |
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|||||||||||||||||||||||||||||||| ||| |||||||||||||||| | | ||| | |||||||||||||||||| | ||||| |||| |
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| T |
24928844 |
acgcagaaggcttctgttcctgagagaagcttagcacatctaaggtggcaggagatgtttaatcgacattgaagccaggttttgaatttagtttgttttt |
24928943 |
T |
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| Q |
119 |
gacttt---tgagtaaacgagtcaaagaacatgtgagagaggtgagtatgagaccatgaagcaagtaagcacatgtaaatgaaatggcaaaggcaatggg |
215 |
Q |
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| T |
24928944 |
ggttatgtatgaggagacgagtaaaaacagcggtgagagcgatgagtattagaccgtgaagcaagtaggcgatggtaaatgtaatggcaaaggtgatggg |
24929043 |
T |
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| Q |
216 |
atttgattgaacttcagaaaacatggtagcatatgcagtaatagtgaatggaatccaatgaaaggcaccacatatgcaaacaaatgaaaag |
306 |
Q |
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| T |
24929044 |
gtttgatgggacttcagaaaacatggtagcatatgcaatgacggtaaatgggatccagtgaaaagcaccacatatgcaaacaaatgaaaag |
24929134 |
T |
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