View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2916_low_11 (Length: 389)
Name: NF2916_low_11
Description: NF2916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2916_low_11 |
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Alignment Details
Target: chr7 (Bit Score: 350; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 18 - 379
Target Start/End: Complemental strand, 103987 - 103626
Alignment:
| Q |
18 |
attacaatttattcacaagaattaaatacgtgattgagctatgaagccctgacactgacacggagacaagtcggcgcagataataatatgagacacttga |
117 |
Q |
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| T |
103987 |
attacaatttattcacaagaattaaatacgtgattgagctatgaagcgctgacactgacacggagacaagtcggcgcagataataatatgagacacttga |
103888 |
T |
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| Q |
118 |
ttctttcattgaatgtaatcacatgtgtcggtggacacaactttctttgatcgtaaaatatattatatgatgctatgcaggcgactcaacaacaacaagc |
217 |
Q |
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| T |
103887 |
ttctttcatggaatgtaatcacatgtgtcgatggacacaactttctttgatcgtaaaatatattatatgatgctatgcaggcgactcaacaacaacaagc |
103788 |
T |
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| Q |
218 |
tgacaggaagaataccaagggaactcactaaactgaaaaatctcaagattttgtgagtctcttatcttattcgagcttctccactccacctagctcttat |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
103787 |
tgacaggaagaataccaagggaactcactaaactgaaaaatctcaagattttgtgagtctcttatcttattcgagcttctccactccacctagctcttat |
103688 |
T |
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| Q |
318 |
aattcatttggctaattattttcatgtgctgtgcagagacctgtcaaacaatgatctctgtg |
379 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
103687 |
aattcatttggctaattattttcatgtgctgtgcagagacctgtcaaacaatgatctctgtg |
103626 |
T |
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