View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2916_low_13 (Length: 330)
Name: NF2916_low_13
Description: NF2916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2916_low_13 |
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| [»] chr8 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 298; Significance: 1e-167; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 5 - 330
Target Start/End: Original strand, 27065678 - 27066003
Alignment:
| Q |
5 |
aaacagaagttgcaaaatcaatcatatcctcaagagaacccacaccacgcttcgtttcacctacactcggcgccctctcgcactcactcaacgcatccac |
104 |
Q |
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| T |
27065678 |
aaacagaagttgcaaaatcaatcatatcctcaagagaacccacacaacgcttcgtttcacctacactcggcgccctctcgcactcactcaacgcatccac |
27065777 |
T |
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| Q |
105 |
catcattttgttcatcgaagaattctcggacaccttaaaaacctgcttcatctcattcaacttagaggatgcaaatggcaatttggtcaaaatggaacga |
204 |
Q |
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| T |
27065778 |
catcatcttattcatcgaagaattctcggacaccttgaaaacttgcttcatctcattcaacttagaagatgcaaatggcaatttggtcaaaatggaacga |
27065877 |
T |
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| Q |
205 |
ggcaaaaacgaccttggcggtaatttatcccttatatctggcataggcataactgtcccttccttcaacattttctcccggaaaaacttaccaggttgaa |
304 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
27065878 |
ggcaaaaacgaccttggcggtaatttatcccttatatctggcataggcataactgtcccttccttcaacatcttctcccggaaaaacttaccaggttgaa |
27065977 |
T |
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| Q |
305 |
ccatgttttttgccaaactaccacta |
330 |
Q |
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| T |
27065978 |
ccatgttttttgccaaactaccacta |
27066003 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 5 - 329
Target Start/End: Original strand, 27079395 - 27079719
Alignment:
| Q |
5 |
aaacagaagttgcaaaatcaatcatatcctcaagagaacccacaccacgcttcgtttcacctacactcggcgccctctcgcactcactcaacgcatccac |
104 |
Q |
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| T |
27079395 |
aaactgaagttgcaaagtcaatcatatcctcaagtgaaccaacacaacgctttgtctcacccatactcggtgccctctcacactcacccaatgagtccac |
27079494 |
T |
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| Q |
105 |
catcattttgttcatcgaagaattctcggacaccttaaaaacctgcttcatctcattcaacttagaggatgcaaatggcaatttggtcaaaatggaacga |
204 |
Q |
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| T |
27079495 |
tatcatcttatccatcgaggaattctcagacaccttaaaaacttgcttcaactcattcaacttagaagatgcaaagggtaatttggtcaaaatggtacgt |
27079594 |
T |
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| Q |
205 |
ggcaaaaacgaccttggcggtaatttatcccttatatctggcataggcataactgtcccttccttcaacattttctcccggaaaaacttaccaggttgaa |
304 |
Q |
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| T |
27079595 |
ggtaaaaacgaccttggcggtaatttatccttaatatccggcataggcataaccaccccttgtttcaacatcttttctcggaaaaacttaccaggttgaa |
27079694 |
T |
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| Q |
305 |
ccatgttttttgccaaactaccact |
329 |
Q |
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| T |
27079695 |
cccatttttttgccaaactaacact |
27079719 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 9 - 307
Target Start/End: Original strand, 27053240 - 27053538
Alignment:
| Q |
9 |
agaagttgcaaaatcaatcatatcctcaagagaacccacaccacgcttcgtttcacctacactcggcgccctctcgcactcactcaacgcatccaccatc |
108 |
Q |
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|||||||||||| |||||||| |||||||| ||||| |||| |||||| | |||||| ||| ||||| || || ||||||||||| | ||||| ||| |
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| T |
27053240 |
agaagttgcaaagtcaatcatgtcctcaagcgaacctacacaacgcttgatctcacctttacttggcgctctttcacactcactcaatgagtccactatc |
27053339 |
T |
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| Q |
109 |
attttgttcatcgaagaattctcggacaccttaaaaacctgcttcatctcattcaacttagaggatgcaaatggcaatttggtcaaaatggaacgaggca |
208 |
Q |
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| T |
27053340 |
atcttttccataaaggaattttcagacaccttgaaaacttgcttcatattgttcaacttagaagatgcaaagggcaatttgatcaaaatggaacgtggca |
27053439 |
T |
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| Q |
209 |
aaaacgaccttggcggtaatttatcccttatatctggcataggcataactgtcccttccttcaacattttctcccggaaaaacttaccaggttgaacca |
307 |
Q |
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| T |
27053440 |
aaaacgacctaggtggtaacttatcccttgtatctggcataggcataacagtcccttccttcaacatcctttcgcggaaaaacttacctggttcaacca |
27053538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 208 - 329
Target Start/End: Complemental strand, 14866157 - 14866036
Alignment:
| Q |
208 |
aaaaacgaccttggcggtaatttatcccttatatctggcataggcataactgtcccttccttcaacattttctcccggaaaaacttaccaggttgaacca |
307 |
Q |
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|||||||||||| ||||||||||| || ||||| ||||||||||| || || ||||| |||||||||||||| | |||||||||||||| | |||| |
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| T |
14866157 |
aaaaacgaccttttaggtaatttatctctaatatcaggcataggcattaccgtaccttctttcaacattttctctctaaaaaacttaccaggctcaaccc |
14866058 |
T |
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| Q |
308 |
tgttttttgccaaactaccact |
329 |
Q |
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|||||| ||||||||||||| |
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| T |
14866057 |
atttttttaccaaactaccact |
14866036 |
T |
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