View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2916_low_14 (Length: 325)
Name: NF2916_low_14
Description: NF2916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2916_low_14 |
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Alignment Details
Target: chr8 (Bit Score: 230; Significance: 1e-127; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 22 - 315
Target Start/End: Complemental strand, 8846328 - 8846035
Alignment:
| Q |
22 |
aggtgcgtgttctaggacgtgaggcaagtcgaaattgacaccatgtatttgaggatatttagaagtaattagcttgagattgatcccaagaccaccacca |
121 |
Q |
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| T |
8846328 |
aggtgcatgttctaggacgtgaggcaagtcaaaattaacaccatgtatatgaggatatttagaagtaattagcttaagattgatcccaagaccaccacca |
8846229 |
T |
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| Q |
122 |
acatcaacaagtttattgatgtgttcaaaaccttcatagatttcaagaaccctcttcatgactatagttgtacaattgaccatagcattgttgaaaacat |
221 |
Q |
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| T |
8846228 |
acatcaacaagtttattgatgtgttcaaaaccttcatagatttcaagaaccctcttcatgactatagttgtacaattggccatagcattgttgaaaacat |
8846129 |
T |
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| Q |
222 |
cattgaaccttggatctgtaagtgtgtattcaaatgcatgcatgccataaaccctattgaatggtacgcctccttccaaaattgctcctttcat |
315 |
Q |
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| T |
8846128 |
cattaaaccttggatccacaattggatattcaaatgcatgcatgccataaaccctattgaatggtatgcctccttccataattgcacctttcat |
8846035 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 41 - 132
Target Start/End: Original strand, 28699288 - 28699379
Alignment:
| Q |
41 |
tgaggcaagtcgaaattgacaccatgtatttgaggatatttagaagtaattagcttgagattgatcccaagaccaccaccaacatcaacaag |
132 |
Q |
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| T |
28699288 |
tgaggcaagtcgaaattgataccgtgtatatgagggtgttttgaagtgatcaagttaatgttgatcccaagaccacctccaacatcaacaag |
28699379 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 66; Significance: 4e-29; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 107 - 312
Target Start/End: Original strand, 49098571 - 49098776
Alignment:
| Q |
107 |
ccaagaccaccaccaacatcaacaagtttattgatgtgttcaaaaccttcatagatttcaagaaccctcttcatgactatagttgtacaattgaccatag |
206 |
Q |
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| T |
49098571 |
ccaagaccaccaccaacatcaactagcttagttatgtggtcaaaaccttgataacaatcaataatcctcttcatgtttatagttgttgaattaaccatag |
49098670 |
T |
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| Q |
207 |
cattgttgaaaacatcattgaaccttggatctgtaagtgtgtattcaaatgcatgcatgccataaaccctattgaatggtacgcctccttccaaaattgc |
306 |
Q |
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| T |
49098671 |
ctttgttgaaaacatcattgaaccttgggtccacacgtggatactcaaacgcatgcattccataaaccctattgaacgctattcctccttccatgatcgc |
49098770 |
T |
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| Q |
307 |
tccttt |
312 |
Q |
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|||||| |
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| T |
49098771 |
tccttt |
49098776 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 41 - 189
Target Start/End: Original strand, 49109613 - 49109761
Alignment:
| Q |
41 |
tgaggcaagtcgaaattgacaccatgtatttgaggatatttagaagtaattagcttgagattgatcccaagaccaccaccaacatcaacaagtttattga |
140 |
Q |
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| T |
49109613 |
tgaggcaagtcgaaattgataccatgtatatgagggtgttttgaagtgattaagttaatgttgacaccaagacctccaccaacatccacaagcctcttga |
49109712 |
T |
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| Q |
141 |
tgtgttcaaaaccttcatagatttcaagaaccctcttcatgactatagt |
189 |
Q |
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| T |
49109713 |
catcttcaaaacctttgtaggattgaagaaccttgttcataactatagt |
49109761 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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