View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2916_low_16 (Length: 314)
Name: NF2916_low_16
Description: NF2916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2916_low_16 |
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Alignment Details
Target: chr5 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 19 - 307
Target Start/End: Complemental strand, 6227187 - 6226884
Alignment:
| Q |
19 |
aatcggaggtgtataatcaacacgaataactggatgataaacagtatgacaacaacgtgttggacaaggtaatggaaactcaagctcattgccgaaacct |
118 |
Q |
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| T |
6227187 |
aatcggaggtgtataatcaacacgaataactggatgataaacagtatgacaacaacgtgttggacaaggtaatggaaactcaagctcattgccgaaacct |
6227088 |
T |
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| Q |
119 |
gtagatagata----------------ttgattgacatgaaaattgtgattgcaaaatagtgaaaacttatatggggagataactaatagaaaaaacgga |
202 |
Q |
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| T |
6227087 |
gtagatatatagatacagatcattagattgattgacatgaaaattgtgattgcaaaatagtgaaaacttatatggg-agataactaatagaaaaaacgga |
6226989 |
T |
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| Q |
203 |
aaagcgaaatccttactgtcatgtgcaaaccaccatgagggatcgcgaacagaggagatcgtagtgccgacgtctccacaccgtgacttcatcgttttca |
302 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6226988 |
aaagcgaaatccttactgtcatgtgcaaaccaccatgagggatcgcgaacagaggagatcgtagtgccgacgtctccacaccgtgacttcatcgttttca |
6226889 |
T |
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| Q |
303 |
tctca |
307 |
Q |
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||||| |
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| T |
6226888 |
tctca |
6226884 |
T |
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