View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2916_low_18 (Length: 277)
Name: NF2916_low_18
Description: NF2916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2916_low_18 |
 | |
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| [»] scaffold0028 (2 HSPs) |
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| [»] chr2 (2 HSPs) |
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| [»] scaffold0002 (1 HSPs) |
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| [»] scaffold0807 (1 HSPs) |
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| [»] scaffold0216 (1 HSPs) |
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Alignment Details
Target: scaffold0028 (Bit Score: 246; Significance: 1e-136; HSPs: 2)
Name: scaffold0028
Description:
Target: scaffold0028; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 1 - 277
Target Start/End: Complemental strand, 110138 - 109861
Alignment:
| Q |
1 |
agaggtgatagaacaactcgaatatatacactggagatgcacccagaaaacctagacttgaatttataagaaaaaagaaattaattttttgtgtagatgt |
100 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
110138 |
agaggtgacagaacaactcgaatatatacactggagatgcacccaggaaacctagacttgaatttataagaaaaaagaagataattttttgtgtagatgt |
110039 |
T |
|
| Q |
101 |
gagttctctaataagtatgtatggttttctctactgtgagaa-aaaacgaaggacgtgagtttcttattgtgagaagacttggtagttccttataattag |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
110038 |
gagttctctaataagtatgtatggttttctctactgtgagaaaaaaatgaaggacgtgagtttcttattgtgagaagacttggtagttccttataattag |
109939 |
T |
|
| Q |
200 |
gaagttataaacacatggtcaaagtgaaagtaagagttggaagagaaaaacaacgaatacggctaattgcaagcaacc |
277 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
109938 |
gaagttataaacacatggtcaaagtgaaagtaagagttggaagagaaaaacaactaatacggctaattgcaagcaacc |
109861 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0028; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 277
Target Start/End: Complemental strand, 127717 - 127443
Alignment:
| Q |
1 |
agaggtgatagaacaactcgaatatatacactggagatgcacccagaaaacctagacttgaatttataagaaaaaagaaattaattttttgtgtagatgt |
100 |
Q |
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|||||||| |||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
127717 |
agaggtgacagaacaactcgaatgtatacactggagatgcacccagaaaaccttgacttgaatttataagaaaaaggaaattaattttttgtgtagatgt |
127618 |
T |
|
| Q |
101 |
gagttctct--aataagtatgtatggttttctctactgtgagaaaaaacgaaggacgtgagtttcttattgtgagaagacttggtagttccttataatta |
198 |
Q |
| |
|
||||||||| || |||||||| |||||||| ||||||| ||||| ||||||||||||||||||||||||||||| |||||| |||||||||||||| |
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| T |
127617 |
gagttctctgtaacaagtatgtccggttttct--actgtga--aaaaatgaaggacgtgagtttcttattgtgagaaggcttggtggttccttataatta |
127522 |
T |
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| Q |
199 |
ggaagttataaacacatggtcaaagtgaaagtaagagttggaagagaaaaacaacgaatacggctaattgcaagcaacc |
277 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
127521 |
ggaagttataaacacatggtcaaagtgaaagtaagagttggaagagaaaaacaactaatacggctaattgcaagcaacc |
127443 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 155; Significance: 2e-82; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 28 - 277
Target Start/End: Complemental strand, 27107290 - 27107043
Alignment:
| Q |
28 |
acactggagatgcacccagaaaacctagacttgaatttataagaaaaaagaaattaattttttgtgtagatgtgagttctct--aataagtatgtatggt |
125 |
Q |
| |
|
|||| ||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||| ||||||||||||||| ||| | ||||||||||||| |
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| T |
27107290 |
acacaggagatgcacccagaaaacctagacatgaatttataagaaaaaggaaattaattttt-gtgtagatgtgagttgtctgtataaagtatgtatggt |
27107192 |
T |
|
| Q |
126 |
tttctctactgtgagaaaaaacgaaggacgtgagtttcttattgtgagaagacttggtagttccttataattaggaagttataaacacatggtcaaagtg |
225 |
Q |
| |
|
||||| || ||||| |||| ||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||| || |
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| T |
27107191 |
tttctatattgtga---aaaatgaaggacgtgagtttcttattgtgagaagactttgtggttccttataattaggaagttataaacacatggtcaaaatg |
27107095 |
T |
|
| Q |
226 |
aaagtaagagttggaagagaaaaacaacgaatacggctaattgcaagcaacc |
277 |
Q |
| |
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||||||| |||||||| ||||||||||| |||| |||||||||||||||||| |
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|
| T |
27107094 |
aaagtaaaagttggaatagaaaaacaactaatatggctaattgcaagcaacc |
27107043 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 11 - 223
Target Start/End: Complemental strand, 32424996 - 32424785
Alignment:
| Q |
11 |
gaacaactcgaatatatacactggagatgcacccagaaaacctagacttgaatttataagaaaaaagaaattaattttttgtgtagatgtgagttctc-- |
108 |
Q |
| |
|
||||||||| ||||||||||| ||||||||||| |||||||||| |||||| ||||||||||||| ||||||||| |||||||||||||||||||||| |
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|
| T |
32424996 |
gaacaactcaaatatatacacaggagatgcaccaagaaaacctaaacttgattttataagaaaaaggaaattaat-ttttgtgtagatgtgagttctcta |
32424898 |
T |
|
| Q |
109 |
taataagtatgtatggttttctctactgtgagaaaaaacgaaggacgtgagtttc--ttattgtgagaagacttggtagttccttataattaggaagtta |
206 |
Q |
| |
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||| |||||||||||||||| |||||| || ||||| |||||||||||||||| ||||||||||||||| |||| |||||||||||||||||||| | |
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| T |
32424897 |
taacaagtatgtatggttttttctactatg---aaaaatgaaggacgtgagtttcttttattgtgagaagac-tggtggttccttataattaggaagtaa |
32424802 |
T |
|
| Q |
207 |
taaacacatggtcaaag |
223 |
Q |
| |
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| ||||||||||||||| |
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| T |
32424801 |
ttaacacatggtcaaag |
32424785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 129; Significance: 8e-67; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 129; E-Value: 8e-67
Query Start/End: Original strand, 2 - 223
Target Start/End: Original strand, 31206728 - 31206952
Alignment:
| Q |
2 |
gaggtgatagaacaactcgaatatatacactggagatgcacccagaaaacctagacttgaatttataagaaaaaagaaattaa--ttttttgtgtagatg |
99 |
Q |
| |
|
||||||| |||||||||||||||||||||| |||||||||||||||||||||| |||||| ||||||||||||| |||||||| ||||||||||||||| |
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|
| T |
31206728 |
gaggtgacagaacaactcgaatatatacacaggagatgcacccagaaaacctaaacttgattttataagaaaaaggaaattaattttttttgtgtagatg |
31206827 |
T |
|
| Q |
100 |
tgagttctc--taataagtatgtatggttttctctactgtgagaaaaaacgaaggacgtgag--tttcttattgtgagaagacttggtagttccttataa |
195 |
Q |
| |
|
||||||||| ||| |||||||||||||||| |||| |||| ||||| |||||||||||| ||| |||||||||||||||||||| ||||||||||| |
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|
| T |
31206828 |
tgagttctctgtaacaagtatgtatggttttttctattgtg---aaaaatgaaggacgtgagttttttttattgtgagaagacttggtggttccttataa |
31206924 |
T |
|
| Q |
196 |
ttaggaagttataaacacatggtcaaag |
223 |
Q |
| |
|
||||||||| || ||||||||||||||| |
|
|
| T |
31206925 |
ttaggaagtaattaacacatggtcaaag |
31206952 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 2 - 110
Target Start/End: Original strand, 31210177 - 31210286
Alignment:
| Q |
2 |
gaggtgatagaacaactcgaatatatacactggagatgcacccagaaaacctagacttgaatttataagaaaaaagaaattaa-ttttttgtgtagatgt |
100 |
Q |
| |
|
||||||| |||||||||||||||||||||| ||||||||||| |||||||||| |||||| || |||||||||| |||||||| ||||||| |||||||| |
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|
| T |
31210177 |
gaggtgacagaacaactcgaatatatacacaggagatgcacctagaaaacctaaacttgatttgataagaaaaaggaaattaatttttttgggtagatgt |
31210276 |
T |
|
| Q |
101 |
gagttctcta |
110 |
Q |
| |
|
|||||||||| |
|
|
| T |
31210277 |
gagttctcta |
31210286 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 114; Significance: 7e-58; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 44643469 - 44643246
Alignment:
| Q |
1 |
agaggtgatagaacaactcgaatatatacactggagatgcacccagaaaacctagacttgaatttataagaaaaaagaaattaattttttgtgtagatgt |
100 |
Q |
| |
|
|||| ||| |||||||||||||||||||||| |||||| |||| | |||||||| |||||| ||||||||||||| |||||||| |||| |||||||||| |
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|
| T |
44643469 |
agagatgacagaacaactcgaatatatacacaggagattcaccaaaaaaacctaaacttgattttataagaaaaaggaaattaa-ttttcgtgtagatgt |
44643371 |
T |
|
| Q |
101 |
gagttctc--taataagtatgtatggttttctctactgtgagaaaaaacgaaggacgtgag--tttcttattgtgagaagacttggtagttccttataat |
196 |
Q |
| |
|
|||||||| ||| |||||||||||||||| |||||||| ||||||| |||||||||||| ||| |||||||||||||||||||| ||||| |||||| |
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|
| T |
44643370 |
gagttctctataacaagtatgtatggttttttctactgt--gaaaaaatgaaggacgtgagttttttttattgtgagaagacttggtggttccatataat |
44643273 |
T |
|
| Q |
197 |
taggaagttataaacacatggtcaaag |
223 |
Q |
| |
|
|||||||| || ||||||||||||||| |
|
|
| T |
44643272 |
taggaagtaattaacacatggtcaaag |
44643246 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 186 - 224
Target Start/End: Original strand, 6668049 - 6668087
Alignment:
| Q |
186 |
ttccttataattaggaagttataaacacatggtcaaagt |
224 |
Q |
| |
|
||||||||||||||||||| || |||||||||||||||| |
|
|
| T |
6668049 |
ttccttataattaggaagtaattaacacatggtcaaagt |
6668087 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 3 - 223
Target Start/End: Original strand, 4242672 - 4242884
Alignment:
| Q |
3 |
aggtgatagaacaactcgaatatatacactggagatgcacccagaaaacctagacttgaatttataagaaaaaagaaattaattttttgtgtagatgtga |
102 |
Q |
| |
|
|||||| ||||||||||||||||| |||| |||||||||||||| |||||||||||||| |||||| |||||| |||||||| ||||||||||||| || |
|
|
| T |
4242672 |
aggtgacagaacaactcgaatataaacacaggagatgcacccaggaaacctagacttgattttatatgaaaaaggaaattaa-tttttgtgtagatatgt |
4242770 |
T |
|
| Q |
103 |
gttctctaataagtatgtatggttttctctactgtgagaaaaaacgaagga-cgtgagtttcttattgtgagaagacttggtagttccttataattagga |
201 |
Q |
| |
|
| | ||| || |||||||||| ||| || || ||||| |||||| |||||||||||||||||||| ||||||||| ||||||||||||||| | |
|
|
| T |
4242771 |
tctatgtaacaa----gtatggtttt-tctcctttg---aaaaatgaaggaccgtgagtttcttattgtgagcagacttggtggttccttataattagta |
4242862 |
T |
|
| Q |
202 |
agttataaacacatggtcaaag |
223 |
Q |
| |
|
||| || |||||||| |||||| |
|
|
| T |
4242863 |
agtaattaacacatgatcaaag |
4242884 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 160 - 223
Target Start/End: Complemental strand, 448577 - 448514
Alignment:
| Q |
160 |
tttcttattgtgagaagacttggtagttccttataattaggaagttataaacacatggtcaaag |
223 |
Q |
| |
|
|||||||||||||| || |||||| |||||||||||||||||||| || ||||||||||||||| |
|
|
| T |
448577 |
tttcttattgtgagcaggcttggtggttccttataattaggaagtaattaacacatggtcaaag |
448514 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 199 - 276
Target Start/End: Original strand, 14837497 - 14837572
Alignment:
| Q |
199 |
ggaagttataaacacatggtcaaagtgaaagtaagagttggaagagaaaaacaacgaatacggctaattgcaagcaac |
276 |
Q |
| |
|
||||||||| || |||||||||||| |||||||||||||||||||| ||| || |||||||||||||||||||||| |
|
|
| T |
14837497 |
ggaagttattaaaacatggtcaaagggaaagtaagagttggaagag--gaactactaatacggctaattgcaagcaac |
14837572 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0807 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0807
Description:
Target: scaffold0807; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 155 - 223
Target Start/End: Original strand, 5553 - 5621
Alignment:
| Q |
155 |
gtgagtttcttattgtgagaagacttggtagttccttataattaggaagttataaacacatggtcaaag |
223 |
Q |
| |
|
||||||||||||||||||| || ||||| ||||||| |||||||||||| || ||| |||||||||| |
|
|
| T |
5553 |
gtgagtttcttattgtgagcagggttggtggttccttgtaattaggaagtaattcacaaatggtcaaag |
5621 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0216 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0216
Description:
Target: scaffold0216; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 142 - 223
Target Start/End: Complemental strand, 11991 - 11906
Alignment:
| Q |
142 |
aaaaacgaaggac-gtgagtttcttattgtgagaaga---cttggtagttccttataattaggaagttataaacacatggtcaaag |
223 |
Q |
| |
|
|||||| |||||| ||||||||||||||||||| || |||||| ||||| | |||||||||||| || ||||||||||||||| |
|
|
| T |
11991 |
aaaaacaaaggaccgtgagtttcttattgtgagcagcacgcttggtggttccatgtaattaggaagtaattaacacatggtcaaag |
11906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 39
Target Start/End: Original strand, 16366468 - 16366504
Alignment:
| Q |
3 |
aggtgatagaacaactcgaatatatacactggagatg |
39 |
Q |
| |
|
|||||| |||||||||||||||||||||| ||||||| |
|
|
| T |
16366468 |
aggtgacagaacaactcgaatatatacacaggagatg |
16366504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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