View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2916_low_19 (Length: 274)

Name: NF2916_low_19
Description: NF2916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2916_low_19
NF2916_low_19
[»] chr7 (30 HSPs)
chr7 (18-263)||(10494694-10494939)
chr7 (19-263)||(8667023-8667267)
chr7 (18-260)||(8654053-8654295)
chr7 (18-255)||(8658966-8659203)
chr7 (18-122)||(13333829-13333933)
chr7 (18-254)||(1301064-1301299)
chr7 (43-209)||(29582215-29582381)
chr7 (18-208)||(6789115-6789305)
chr7 (30-212)||(17259856-17260038)
chr7 (30-211)||(17267554-17267735)
chr7 (18-146)||(8545236-8545364)
chr7 (30-255)||(27831203-27831428)
chr7 (18-209)||(8537639-8537830)
chr7 (18-145)||(8575929-8576056)
chr7 (18-209)||(8590241-8590432)
chr7 (43-208)||(29578047-29578212)
chr7 (69-209)||(7878107-7878247)
chr7 (33-209)||(8581318-8581494)
chr7 (69-209)||(8616335-8616475)
chr7 (54-209)||(8609556-8609711)
chr7 (30-116)||(3146879-3146965)
chr7 (71-209)||(8569967-8570105)
chr7 (18-260)||(8586029-8586271)
chr7 (213-263)||(13333776-13333826)
chr7 (59-208)||(8102311-8102460)
chr7 (18-73)||(8671608-8671663)
chr7 (34-116)||(27846573-27846655)
chr7 (30-146)||(8646492-8646608)
chr7 (59-107)||(39985290-39985338)
chr7 (59-118)||(8017878-8017937)
[»] chr4 (6 HSPs)
chr4 (18-263)||(9336211-9336456)
chr4 (19-255)||(30774856-30775092)
chr4 (54-209)||(35132095-35132250)
chr4 (61-211)||(23596957-23597107)
chr4 (59-116)||(23588200-23588257)
chr4 (61-118)||(54396069-54396126)
[»] chr2 (9 HSPs)
chr2 (40-216)||(16657884-16658060)
chr2 (22-208)||(16662367-16662553)
chr2 (18-146)||(43625015-43625143)
chr2 (30-255)||(12245734-12245959)
chr2 (28-209)||(14703021-14703202)
chr2 (30-255)||(11999023-11999247)
chr2 (46-107)||(7541857-7541918)
chr2 (74-182)||(12234349-12234456)
chr2 (56-209)||(12258955-12259108)
[»] chr1 (4 HSPs)
chr1 (18-214)||(4678926-4679122)
chr1 (18-208)||(15594637-15594827)
chr1 (18-197)||(34467174-34467353)
chr1 (28-107)||(52549422-52549501)
[»] chr8 (2 HSPs)
chr8 (37-209)||(12528126-12528298)
chr8 (18-208)||(43744419-43744609)
[»] chr5 (1 HSPs)
chr5 (18-113)||(28219521-28219616)


Alignment Details
Target: chr7 (Bit Score: 246; Significance: 1e-136; HSPs: 30)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 18 - 263
Target Start/End: Complemental strand, 10494939 - 10494694
Alignment:
Q  18 aacatctcgtagcaccaagttcgggacattcttaaagccttcactcaaaatagcagcctgaacagctgcaccataagcaacagcctcatctgggttgata 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10494939 aacatctcgtagcaccaagttcgggacattcttaaagccttcactcaaaatagcagcctgaacagctgcaccataagcaacagcctcatctgggttgata 10494840  T
Q  118 cgcatgaataattccttccccttgaaaaattctagcaatagatcctgcactttgggaatcctagacgagccacccacaagaacaatatcatcaatatcat 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10494839 cgcatgaataattccttccccttgaaaaattctagcaatagatcctgcactttgggaatcctagacgagccacccacaagaacaatatcatcaatatcat 10494740  T
Q  218 tcttgtatatctttgaatccctgagacaactgtcaacaatattcat 263  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  10494739 tcttgtatatctttgaatccctgagacaactgtcaacaatattcat 10494694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 19 - 263
Target Start/End: Original strand, 8667023 - 8667267
Alignment:
Q  19 acatctcgtagcaccaagttcgggacattcttaaagccttcactcaaaatagcagcctgaacagctgcaccataagcaacagcctcatctgggttgatac 118  Q
    |||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  8667023 acatctcgtagcaccaagttggggacattcttacagccttcactcaaaatagcagcctgaacagctgcaccataagcaacagcctcgtctgggttgatac 8667122  T
Q  119 gcatgaataattccttccccttgaaaaattctagcaatagatcctgcactttgggaatcctagacgagccacccacaagaacaatatcatcaatatcatt 218  Q
     ||||||||||||||||||||||||| ||||||||||| | |||||||||||||||||||||||||||||||| ||||| |||| |||||||||||||||    
T  8667123 ccatgaataattccttccccttgaaatattctagcaattgttcctgcactttgggaatcctagacgagccaccgacaagtacaacatcatcaatatcatt 8667222  T
Q  219 cttgtatatctttgaatccctgagacaactgtcaacaatattcat 263  Q
    |||||||||||||||||||||||||||  ||||||| ||||||||    
T  8667223 cttgtatatctttgaatccctgagacaggtgtcaactatattcat 8667267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 171; E-Value: 7e-92
Query Start/End: Original strand, 18 - 260
Target Start/End: Original strand, 8654053 - 8654295
Alignment:
Q  18 aacatctcgtagcaccaagttcgggacattcttaaagccttcactcaaaatagcagcctgaacagctgcaccataagcaacagcctcatctgggttgata 117  Q
    |||||| |||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||| || ||||| |||| |||||||||||||||||||    
T  8654053 aacatcacgtagcaccaagttggggacattcttaaagtcttcactcaaaatagcagcctgaacagcagcgccatatgcaatagcctcatctgggttgata 8654152  T
Q  118 cgcatgaataattccttccccttgaaaaattctagcaatagatcctgcactttgggaatcctagacgagccacccacaagaacaatatcatcaatatcat 217  Q
      ||| || ||  |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| || |||| ||||||||||||||    
T  8654153 ttcataaacaaagccttccccttgaaaaactctagcaatagatcctgcactttgggaatcctagacgagccacccacgagtacaacatcatcaatatcat 8654252  T
Q  218 tcttgtatatctttgaatccctgagacaactgtcaacaatatt 260  Q
    ||||||||||||||||||| |||||||||||||||||||||||    
T  8654253 tcttgtatatctttgaatctctgagacaactgtcaacaatatt 8654295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 18 - 255
Target Start/End: Original strand, 8658966 - 8659203
Alignment:
Q  18 aacatctcgtagcaccaagttcgggacattcttaaagccttcactcaaaatagcagcctgaacagctgcaccataagcaacagcctcatctgggttgata 117  Q
    ||||||| | ||||||||||| |||||||||||||||||||  || |||| |||||| |||| |||||||||||||||||||||||||||||||||||||    
T  8658966 aacatcttgcagcaccaagtttgggacattcttaaagcctttgcttaaaacagcagcttgaagagctgcaccataagcaacagcctcatctgggttgata 8659065  T
Q  118 cgcatgaataattccttccccttgaaaaattctagcaatagatcctgcactttgggaatcctagacgagccacccacaagaacaatatcatcaatatcat 217  Q
    | | || ||||  |||||     |||||  ||| |||||||||| ||||||||||||||||||||||| |||||||||||||||||||| |||||||||     
T  8659066 ctcttgtataaaaccttctttgggaaaaggtcttgcaatagatcttgcactttgggaatcctagacgaaccacccacaagaacaatatcgtcaatatcac 8659165  T
Q  218 tcttgtatatctttgaatccctgagacaactgtcaaca 255  Q
    || | | ||| |||||||| || |||||||| ||||||    
T  8659166 tcatctgtatttttgaatcgctaagacaactctcaaca 8659203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 18 - 122
Target Start/End: Complemental strand, 13333933 - 13333829
Alignment:
Q  18 aacatctcgtagcaccaagttcgggacattcttaaagccttcactcaaaatagcagcctgaacagctgcaccataagcaacagcctcatctgggttgata 117  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13333933 aacatctcgtagcaccaagttcgggacagtcttaaagccttcactcaaaatagcagcctgaacagctgcaccataagcaacagcctcatctgggttgata 13333834  T
Q  118 cgcat 122  Q
    |||||    
T  13333833 cgcat 13333829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 18 - 254
Target Start/End: Original strand, 1301064 - 1301299
Alignment:
Q  18 aacatctcgtagcaccaagttcgggacattcttaaagccttcactcaaaatagcagcctgaacagctgcaccataagcaacagcctcatctgggttgata 117  Q
    ||||||| | ||||||||||| ||||||||||| || ||||  || ||||||||||| |||| |||||||||||||||||||||||| || |||||||||    
T  1301064 aacatcttgcagcaccaagtttgggacattcttgaatcctttgcttaaaatagcagcttgaatagctgcaccataagcaacagcctcgtc-gggttgata 1301162  T
Q  118 cgcatgaataattccttccccttgaaaaattctagcaatagatcctgcactttgggaatcctagacgagccacccacaagaacaatatcatcaatatcat 217  Q
    | | || ||||  | ||| ||  |||||  ||| |||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||     
T  1301163 ctcttgtataaaactttctccgggaaaatgtcttgcaatatatcttgcactttgggaatcctagacgagccacccacaagaacaatatcatcgatatcac 1301262  T
Q  218 tcttgtatatctttgaatccctgagacaactgtcaac 254  Q
    || || |||| |||||||| || |||||||| |||||    
T  1301263 tcatgcatatttttgaatcgctaagacaactctcaac 1301299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 43 - 209
Target Start/End: Complemental strand, 29582381 - 29582215
Alignment:
Q  43 acattcttaaagccttcactcaaaatagcagcctgaacagctgcaccataagcaacagcctcatctgggttgatacgcatgaataattccttccccttga 142  Q
    ||||||| || ||||||| |||  | ||||||||| ||||||||||||||||||||||||||||| |||||||| | |||| | || |||||||||||||    
T  29582381 acattctcaatgccttcaatcagcaaagcagcctgcacagctgcaccataagcaacagcctcatcagggttgatgctcatgcacaaatccttccccttga 29582282  T
Q  143 aaaattctagcaatagatcctgcactttgggaatcctagacgagccacccacaagaacaatatcatc 209  Q
    |||||||| ||||||| |  |||||||||||||| ||||| |||||||| | ||| || ||||||||    
T  29582281 aaaattcttgcaatagctgatgcactttgggaattctagaagagccaccaataaggacgatatcatc 29582215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 18 - 208
Target Start/End: Original strand, 6789115 - 6789305
Alignment:
Q  18 aacatctcgtagcaccaagttcgggacattcttaaagccttcactcaaaatagcagcctgaacagctgcaccataagcaacagcctcatctgggttgata 117  Q
    ||||||| | ||||||||||| || ||| ||||| ||||||| ||||| | ||||||||| ||||||||||| ||||||||||||||||| ||||||||     
T  6789115 aacatcttgcagcaccaagtttggaacactcttagagccttcgctcaacaaagcagcctggacagctgcaccgtaagcaacagcctcatcagggttgatg 6789214  T
Q  118 cgcatgaataattccttccccttgaaaaattctagcaatagatcctgcactttgggaatcctagacgagccacccacaagaacaatatcat 208  Q
    | |||| | || ||||| ||| |||||| |||| ||||||| |  |||||||||||||| ||||| || ||||| ||||| |||| |||||    
T  6789215 ctcatgcacaaatcctttcccatgaaaacttcttgcaatagttgttgcactttgggaattctagaagacccaccaacaaggacaacatcat 6789305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 30 - 212
Target Start/End: Original strand, 17259856 - 17260038
Alignment:
Q  30 caccaagttcgggacattcttaaagccttcactcaaaatagcagcctgaacagctgcaccataagcaacagcctcatctgggttgatacgcatgaataat 129  Q
    ||||||||| || |||||||| | || | |||| || | ||||||||||||||| ||||||||||||||||||||||| |||||||| | | || |||||    
T  17259856 caccaagtttggaacattcttgacgcttccacttaacaaagcagcctgaacagcagcaccataagcaacagcctcatcagggttgatgctcttgcataat 17259955  T
Q  130 tccttccccttgaaaaattctagcaatagatcctgcactttgggaatcctagacgagccacccacaagaacaatatcatcaat 212  Q
    ||||| |||||||| || ||  ||||||| | ||||||||| ||||||||||| || ||||| ||||| |||| |||||||||    
T  17259956 tccttacccttgaagaaatcctgcaatagttgctgcactttcggaatcctagaagatccaccaacaaggacaacatcatcaat 17260038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 30 - 211
Target Start/End: Original strand, 17267554 - 17267735
Alignment:
Q  30 caccaagttcgggacattcttaaagccttcactcaaaatagcagcctgaacagctgcaccataagcaacagcctcatctgggttgatacgcatgaataat 129  Q
    ||||||||| || |||||||| | || | |||| || | ||||||||||||||| ||||||||||||||||||||||| ||||||||||   || |||||    
T  17267554 caccaagtttggaacattcttgacgcttccacttaacaaagcagcctgaacagcagcaccataagcaacagcctcatcagggttgatacttttgcataat 17267653  T
Q  130 tccttccccttgaa-aaattctagcaatagatcctgcactttgggaatcctagacgagccacccacaagaacaatatcatcaa 211  Q
    |||||||||||||| || |||| ||||||| | ||||||||| ||||||||||| || ||||| ||||| |||| ||||||||    
T  17267654 tccttccccttgaagaagttct-gcaatagttgctgcactttcggaatcctagaagacccaccaacaaggacaacatcatcaa 17267735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 18 - 146
Target Start/End: Original strand, 8545236 - 8545364
Alignment:
Q  18 aacatctcgtagcaccaagttcgggacattcttaaagccttcactcaaaatagcagcctgaacagctgcaccataagcaacagcctcatctgggttgata 117  Q
    ||||||||||||||||| ||| ||||||||||||  | |||||||||  | ||||||||| ||||||||||||||||||||||||||||| ||||| ||     
T  8545236 aacatctcgtagcaccatgtttgggacattcttattgtcttcactcagcaaagcagcctggacagctgcaccataagcaacagcctcatcagggttaatg 8545335  T
Q  118 cgcatgaataattccttccccttgaaaaa 146  Q
    | | || |||||||||||||||| |||||    
T  8545336 ctcttgcataattccttccccttaaaaaa 8545364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 30 - 255
Target Start/End: Complemental strand, 27831428 - 27831203
Alignment:
Q  30 caccaagttcgggacattcttaaagccttcactcaaaatagcagcctgaacagctgcaccataagcaacagcctcatctgggttgatacgcatgaataat 129  Q
    ||||||||| || |||||| ||| | | |||||||| | ||||||||| |||||||||||| |||||||||||||||| || ||||| | | || | ||     
T  27831428 caccaagtttggaacattcataatgtcatcactcaacaaagcagcctgcacagctgcaccaaaagcaacagcctcatcaggattgatgctcttgcacaaa 27831329  T
Q  130 tccttccccttgaaaaattctagcaatagatcctgcactttgggaatcctagacgagccacccacaagaacaatatcatcaatatcattcttgtatatct 229  Q
    ||||| ||||||||||| ||   |||||| | |||||||||||||||||| || |||||||| ||||| |||| |||||| |||  | ||||||  ||||    
T  27831328 tcctttcccttgaaaaagtccgccaatagctgctgcactttgggaatccttgaagagccaccaacaaggacaacatcatctatactactcttgtccatct 27831229  T
Q  230 ttgaatccctgagacaactgtcaaca 255  Q
    | || ||  |||||||||| ||||||    
T  27831228 tagagtcagtgagacaactctcaaca 27831203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 18 - 209
Target Start/End: Original strand, 8537639 - 8537830
Alignment:
Q  18 aacatctcgtagcaccaagttcgggacattcttaaagccttcactcaaaatagcagcctgaacagctgcaccataagcaacagcctcatctgggttgata 117  Q
    ||||||||| |||||||||||||| ||| |||||| |||| | ||||| | ||||||||| ||||| ||||||||||||||||| ||||| ||||||||     
T  8537639 aacatctcgcagcaccaagttcggaacagtcttaatgcctccgctcaacaaagcagcctggacagcagcaccataagcaacagcttcatcagggttgatg 8537738  T
Q  118 cgcatgaataattccttccccttgaaaaattctagcaatagatcctgcactttgggaatcctagacgagccacccacaagaacaatatcatc 209  Q
    |   | || |  ||||||||| ||||||| | | |||  |||  ||||||||||||||||||||| |||||||| || || |||| ||||||    
T  8537739 cttttaaaaatatccttccccctgaaaaagttttgcagcagactctgcactttgggaatcctagaagagccaccaactagtacaacatcatc 8537830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 18 - 145
Target Start/End: Original strand, 8575929 - 8576056
Alignment:
Q  18 aacatctcgtagcaccaagttcgggacattcttaaagccttcactcaaaatagcagcctgaacagctgcaccataagcaacagcctcatctgggttgata 117  Q
    ||||||||||| ||||||||| || |||||||||  |||||||||||| | |||||| || ||| | ||||||||||||||||||||||| ||||||||     
T  8575929 aacatctcgtaacaccaagtttggaacattcttactgccttcactcaacaaagcagcttggacaacagcaccataagcaacagcctcatcagggttgatg 8576028  T
Q  118 cgcatgaataattccttccccttgaaaa 145  Q
    | | |  |||||||||||||||||||||    
T  8576029 ctcttacataattccttccccttgaaaa 8576056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 18 - 209
Target Start/End: Original strand, 8590241 - 8590432
Alignment:
Q  18 aacatctcgtagcaccaagttcgggacattcttaaagccttcactcaaaatagcagcctgaacagctgcaccataagcaacagcctcatctgggttgata 117  Q
    ||||||| |||||||||| || || ||||||||||  || ||||  |  | |||||| ||||||||||||||||||||||||||||||||||| |||||     
T  8590241 aacatcttgtagcaccaaattaggaacattcttaatcccatcacaaagcaaagcagcttgaacagctgcaccataagcaacagcctcatctggattgatg 8590340  T
Q  118 cgcatgaataattccttccccttgaaaaattctagcaatagatcctgcactttgggaatcctagacgagccacccacaagaacaatatcatc 209  Q
    |   || | |  ||||||||| | ||||| ||| ||||||| | ||||||||||||||||||||| || ||||| ||||| |||| ||||||    
T  8590341 ctattgtaaagatccttccccataaaaaagtcttgcaatagctgctgcactttgggaatcctagaagaaccaccaacaagtacaacatcatc 8590432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 43 - 208
Target Start/End: Complemental strand, 29578212 - 29578047
Alignment:
Q  43 acattcttaaagccttcactcaaaatagcagcctgaacagctgcaccataagcaacagcctcatctgggttgatacgcatgaataattccttccccttga 142  Q
    |||||||||| ||| ||| |||| | ||||||||| |||||||||||||||||||||||||| || ||||| || | |||| | || ||| | |||||||    
T  29578212 acattcttaatgccatcaatcaacaaagcagcctgcacagctgcaccataagcaacagcctcgtcagggtttatgctcatgcacaaatccctacccttga 29578113  T
Q  143 aaaattctagcaatagatcctgcactttgggaatcctagacgagccacccacaagaacaatatcat 208  Q
    |||| ||| ||||||| | | ||||||||||||| ||||| || || || ||||| ||||| ||||    
T  29578112 aaaagtcttgcaatagtttccgcactttgggaattctagatgaacctccaacaaggacaatttcat 29578047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 69 - 209
Target Start/End: Complemental strand, 7878247 - 7878107
Alignment:
Q  69 agcagcctgaacagctgcaccataagcaacagcctcatctgggttgatacgcatgaataattccttccccttgaaaaattctagcaatagatcctgcact 168  Q
    ||||||||||||||||||||||||||||||||| ||||| |||||||| |   || | |  ||||||||||| ||||| ||  ||||||| | |||||||    
T  7878247 agcagcctgaacagctgcaccataagcaacagcttcatccgggttgatgctactgcaaatatccttccccttaaaaaagtcctgcaatagctgctgcact 7878148  T
Q  169 ttgggaatcctagacgagccacccacaagaacaatatcatc 209  Q
    ||| |||||||||| || ||||| ||||| |||| ||||||    
T  7878147 ttgagaatcctagatgatccaccaacaagtacaacatcatc 7878107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 33 - 209
Target Start/End: Original strand, 8581318 - 8581494
Alignment:
Q  33 caagttcgggacattcttaaagccttcactcaaaatagcagcctgaacagctgcaccataagcaacagcctcatctgggttgatacgcatgaataattcc 132  Q
    |||||| || ||| |||||| ||||||||| |  | ||||||||||| ||| ||||||||||||||||||||||| |||||||| | | || ||||||||    
T  8581318 caagtttggaacactcttaatgccttcactaaccaaagcagcctgaatagcagcaccataagcaacagcctcatcagggttgatgctcttgcataattcc 8581417  T
Q  133 ttccccttgaaaaattctagcaatagatcctgcactttgggaatcctagacgagccacccacaagaacaatatcatc 209  Q
    ||||||| |||||| ||  | ||||| |    |||||| ||||||||||| || ||||| ||||| |||| ||||||    
T  8581418 ttcccctggaaaaactcctgtaatagctgtctcactttaggaatcctagaagaaccaccaacaaggacaacatcatc 8581494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 69 - 209
Target Start/End: Original strand, 8616335 - 8616475
Alignment:
Q  69 agcagcctgaacagctgcaccataagcaacagcctcatctgggttgatacgcatgaataattccttccccttgaaaaattctagcaatagatcctgcact 168  Q
    |||||||||||| ||||| |||  ||||||||||||||| || |||||   | || | || |||||||| | |||||| ||   |||||| |||||||||    
T  8616335 agcagcctgaactgctgccccactagcaacagcctcatcaggattgatgttcttgcacaaatccttcccatcgaaaaagtcactcaatagttcctgcact 8616434  T
Q  169 ttgggaatcctagacgagccacccacaagaacaatatcatc 209  Q
    || |||||||||||||||||||| |||||||||||||||||    
T  8616435 ttaggaatcctagacgagccaccgacaagaacaatatcatc 8616475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 54 - 209
Target Start/End: Original strand, 8609556 - 8609711
Alignment:
Q  54 gccttcactcaaaatagcagcctgaacagctgcaccataagcaacagcctcatctgggttgatacgcatgaataattccttccccttgaaaaattctagc 153  Q
    |||||||| ||| | ||||||||| ||||| |||||||||||||| |||||||| |||||||| | |||  | || ||||| || |||||||| ||| ||    
T  8609556 gccttcacccaacaaagcagcctggacagcagcaccataagcaaccgcctcatcagggttgatgctcatacacaaatcctttccattgaaaaagtcttgc 8609655  T
Q  154 aatagatcctgcactttgggaatcctagacgagccacccacaagaacaatatcatc 209  Q
    | ||| | || |||||| ||||||||||| || || || |||||||||| ||||||    
T  8609656 agtagctgcttcactttcggaatcctagaagaacctccaacaagaacaacatcatc 8609711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 30 - 116
Target Start/End: Original strand, 3146879 - 3146965
Alignment:
Q  30 caccaagttcgggacattcttaaagccttcactcaaaatagcagcctgaacagctgcaccataagcaacagcctcatctgggttgat 116  Q
    ||||||||| || ||||| |||||| |||||||||| | |||||| || |||||||||||||||||||| |||||||| ||||||||    
T  3146879 caccaagtttggaacatttttaaagtcttcactcaacaaagcagcttgcacagctgcaccataagcaacggcctcatcagggttgat 3146965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 71 - 209
Target Start/End: Original strand, 8569967 - 8570105
Alignment:
Q  71 cagcctgaacagctgcaccataagcaacagcctcatctgggttgatacgcatgaataattccttccccttgaaaaattctagcaatagatcctgcacttt 170  Q
    ||||||||| ||||||||| ||||||||||||||||| ||||| || |   || ||||||||||||||| |||||| ||| | ||||| | |  ||||||    
T  8569967 cagcctgaatagctgcaccgtaagcaacagcctcatcagggttaatgctgttgcataattccttcccctggaaaaactcttgtaatagctgcctcacttt 8570066  T
Q  171 gggaatcctagacgagccacccacaagaacaatatcatc 209  Q
     ||||||||||| || ||||| ||||| |||| ||||||    
T  8570067 aggaatcctagaagaaccaccaacaaggacaacatcatc 8570105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 18 - 260
Target Start/End: Complemental strand, 8586271 - 8586029
Alignment:
Q  18 aacatctcgtagcaccaagttcgggacattcttaaagccttcactcaaaatagcagcctgaacagctgcaccataagcaacagcctcatctgggttgata 117  Q
    ||||||||| ||||||||||| || || ||||||||| ||| || ||  | || ||||||||| || || |||  ||||||||||||||| || |||||     
T  8586271 aacatctcgcagcaccaagtttggaactttcttaaagtctttacacagcaaagaagcctgaactgcagccccactagcaacagcctcatcaggattgatg 8586172  T
Q  118 cgcatgaataattccttccccttgaaaaattctagcaatagatcctgcactttgggaatcctagacgagccacccacaagaacaatatcatcaatatcat 217  Q
      | || |||| || ||||| ||||| || ||   |||||| ||||| ||||||||||| || ||||||||||| ||||| |||||||| || | | |||    
T  8586171 ttcttgcataaatctttcccattgaagaagtcactcaatagttcctgtactttgggaattctggacgagccaccgacaaggacaatatcgtctacaccat 8586072  T
Q  218 tcttgtatatctttgaatccctgagacaactgtcaacaatatt 260  Q
    |||| | |||||| |||||  | |||||||| |||||| ||||    
T  8586071 tcttctctatcttagaatcggtaagacaactctcaacagtatt 8586029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 213 - 263
Target Start/End: Complemental strand, 13333826 - 13333776
Alignment:
Q  213 atcattcttgtatatctttgaatccctgagacaactgtcaacaatattcat 263  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  13333826 atcactcttgtatatctttgaatccctgagacaactgtcaacaatattcat 13333776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 59 - 208
Target Start/End: Original strand, 8102311 - 8102460
Alignment:
Q  59 cactcaaaatagcagcctgaacagctgcaccataagcaacagcctcatctgggttgatacgcatgaataattccttccccttgaaaaattctagcaatag 158  Q
    ||||||| |||||||| |||||||| |||||||||||||||||||| || |||||||| |   || |||  ||||| || ||||| || ||| |||| ||    
T  8102311 cactcaagatagcagcttgaacagcggcaccataagcaacagcctcgtcggggttgatgcttttgcatagctccttaccattgaagaagtcttgcaacag 8102410  T
Q  159 atcctgcactttgggaatcctagacgagccacccacaagaacaatatcat 208  Q
     | ||| ||||||||||||||||  || ||||| |||||||||| |||||    
T  8102411 ttgctgaactttgggaatcctagttgaaccaccaacaagaacaacatcat 8102460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 18 - 73
Target Start/End: Complemental strand, 8671663 - 8671608
Alignment:
Q  18 aacatctcgtagcaccaagttcgggacattcttaaagccttcactcaaaatagcag 73  Q
    ||||||||||||||||||||| |||||||||||||||||||  |||||||||||||    
T  8671663 aacatctcgtagcaccaagttggggacattcttaaagcctttgctcaaaatagcag 8671608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 34 - 116
Target Start/End: Complemental strand, 27846655 - 27846573
Alignment:
Q  34 aagttcgggacattcttaaagccttcactcaaaatagcagcctgaacagctgcaccataagcaacagcctcatctgggttgat 116  Q
    ||||| || |||||||||| | | |||||||| | ||||||||| |||||||| ||| |||||||||||||||| ||||||||    
T  27846655 aagtttggaacattcttaatgtcatcactcaacaaagcagcctgcacagctgctccaaaagcaacagcctcatcagggttgat 27846573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 30 - 146
Target Start/End: Original strand, 8646492 - 8646608
Alignment:
Q  30 caccaagttcgggacattcttaaagccttcactcaaaatagcagcctgaacagctgcaccataagcaacagcctcatctgggttgatacgcatgaataat 129  Q
    ||||||||| ||  ||||||||||||| ||||  || | |||||||||||| ||||| ||||||||||| ||| |||| |||||||| | |  | |||||    
T  8646492 caccaagtttggagcattcttaaagccatcacataataaagcagcctgaacggctgcgccataagcaacggccacatcagggttgatgctctcgcataat 8646591  T
Q  130 tccttccccttgaaaaa 146  Q
    |||||| | ||||||||    
T  8646592 tccttctcattgaaaaa 8646608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 59 - 107
Target Start/End: Original strand, 39985290 - 39985338
Alignment:
Q  59 cactcaaaatagcagcctgaacagctgcaccataagcaacagcctcatc 107  Q
    ||||||| ||||||||||||||||| |||||||| ||||||||||||||    
T  39985290 cactcaagatagcagcctgaacagcagcaccatatgcaacagcctcatc 39985338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 59 - 118
Target Start/End: Complemental strand, 8017937 - 8017878
Alignment:
Q  59 cactcaaaatagcagcctgaacagctgcaccataagcaacagcctcatctgggttgatac 118  Q
    |||||||||| || || || ||||| |||||||||||||||||||| |||||||||||||    
T  8017937 cactcaaaattgctgcttgtacagcggcaccataagcaacagcctcgtctgggttgatac 8017878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 198; Significance: 1e-108; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 18 - 263
Target Start/End: Complemental strand, 9336456 - 9336211
Alignment:
Q  18 aacatctcgtagcaccaagttcgggacattcttaaagccttcactcaaaatagcagcctgaacagctgcaccataagcaacagcctcatctgggttgata 117  Q
    ||||||||||||||||||||| ||  ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  9336456 aacatctcgtagcaccaagttgggcgcattcttaaagccttcactcaaaatagcagcttgaacagctgcaccataagcaacagcctcatctgggttgata 9336357  T
Q  118 cgcatgaataattccttccccttgaaaaattctagcaatagatcctgcactttgggaatcctagacgagccacccacaagaacaatatcatcaatatcat 217  Q
    | ||||||||||||||||||||||||||||||||||||||| || |||||||| ||||||||||||||||||||||||||||||||||||||||||| |     
T  9336356 cccatgaataattccttccccttgaaaaattctagcaatagttcttgcactttcggaatcctagacgagccacccacaagaacaatatcatcaatattac 9336257  T
Q  218 tcttgtatatctttgaatccctgagacaactgtcaacaatattcat 263  Q
    ||||||||||||||||||||||||||||  ||||||||||||||||    
T  9336256 tcttgtatatctttgaatccctgagacaggtgtcaacaatattcat 9336211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 19 - 255
Target Start/End: Original strand, 30774856 - 30775092
Alignment:
Q  19 acatctcgtagcaccaagttcgggacattcttaaagccttcactcaaaatagcagcctgaacagctgcaccataagcaacagcctcatctgggttgatac 118  Q
    |||||||| |||||||| || ||| ||||||||| |||||||||||| | ||||||||| |||||||| || | |||||| |||||||| || ||||| |    
T  30774856 acatctcgcagcaccaactttggggcattcttaatgccttcactcaatagagcagcctggacagctgccccgtgagcaactgcctcatcaggattgatgc 30774955  T
Q  119 gcatgaataattccttccccttgaaaaattctagcaatagatcctgcactttgggaatcctagacgagccacccacaagaacaatatcatcaatatcatt 218  Q
     | || | || |||||||| ||||| || |   ||||||| ||||||||||||||||||||||| || ||||| ||||||||||||||||| | |  | |    
T  30774956 tcttgcacaaatccttcccattgaagaaattacgcaatagttcctgcactttgggaatcctagaagaaccaccgacaagaacaatatcatctacactact 30775055  T
Q  219 cttgtatatctttgaatccctgagacaactgtcaaca 255  Q
    ||||| || |||||||||  | |||||||| ||||||    
T  30775056 cttgtctacctttgaatcagtaagacaactctcaaca 30775092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 54 - 209
Target Start/End: Original strand, 35132095 - 35132250
Alignment:
Q  54 gccttcactcaaaatagcagcctgaacagctgcaccataagcaacagcctcatctgggttgatacgcatgaataattccttccccttgaaaaattctagc 153  Q
    ||||| |||||| | |||||||||||| ||||| |||||||| ||||||||||| ||||| || | | || | || |||||||| |||||||| | | ||    
T  35132095 gcctttactcaacaaagcagcctgaactgctgccccataagctacagcctcatcggggttaatgctcttgcacaactccttccctttgaaaaagttttgc 35132194  T
Q  154 aatagatcctgcactttgggaatcctagacgagccacccacaagaacaatatcatc 209  Q
    ||||| | ||||||||||||||||||||| || || || |||||||||| ||||||    
T  35132195 aatagctgctgcactttgggaatcctagaagaccctccaacaagaacaacatcatc 35132250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 61 - 211
Target Start/End: Complemental strand, 23597107 - 23596957
Alignment:
Q  61 ctcaaaatagcagcctgaacagctgcaccataagcaacagcctcatctgggttgatacgcatgaataattccttccccttgaaaaattctagcaatagat 160  Q
    |||||||||||||| || || || || |||||||||||||||||||| |||||||| | | |  | | ||||||||| ||||| || ||| |||| || |    
T  23597107 ctcaaaatagcagcttggactgcagcgccataagcaacagcctcatcagggttgatgctcttacaaagttccttcccattgaagaaatcttgcaaaagtt 23597008  T
Q  161 cctgcactttgggaatcctagacgagccacccacaagaacaatatcatcaa 211  Q
      || || ||||||||||||| ||| || || |||||||||| ||||||||    
T  23597007 gttgaaccttgggaatcctagtcgatccgccaacaagaacaacatcatcaa 23596957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 59 - 116
Target Start/End: Complemental strand, 23588257 - 23588200
Alignment:
Q  59 cactcaaaatagcagcctgaacagctgcaccataagcaacagcctcatctgggttgat 116  Q
    |||||||||||||||| || || ||||| ||||| |||||||| ||||| ||||||||    
T  23588257 cactcaaaatagcagcttggacggctgccccatatgcaacagcttcatcggggttgat 23588200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 61 - 118
Target Start/End: Original strand, 54396069 - 54396126
Alignment:
Q  61 ctcaaaatagcagcctgaacagctgcaccataagcaacagcctcatctgggttgatac 118  Q
    |||||||| || || |||||||| ||||||||||||||||| ||||| ||||| ||||    
T  54396069 ctcaaaatcgctgcttgaacagcagcaccataagcaacagcttcatcagggttaatac 54396126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 117; Significance: 1e-59; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 40 - 216
Target Start/End: Complemental strand, 16658060 - 16657884
Alignment:
Q  40 gggacattcttaaagccttcactcaaaatagcagcctgaacagctgcaccataagcaacagcctcatctgggttgatacgcatgaataattccttcccct 139  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| ||||| ||||||||||   || |||| ||||| ||||    
T  16658060 gggacattcttaaagccttcactcaaaatagcagcttgaacagctgcaccgtaagcaacagcttcatccgggttgatacttttgcataaatccttgccct 16657961  T
Q  140 tgaaaaattctagcaatagatcctgcactttgggaatcctagacgagccacccacaagaacaatatcatcaatatca 216  Q
    ||||||| ||| ||||||||||||||||||||||||||||||| |||||||||||||||||||  ||||||||||||    
T  16657960 tgaaaaagtcttgcaatagatcctgcactttgggaatcctagatgagccacccacaagaacaacgtcatcaatatca 16657884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 22 - 208
Target Start/End: Complemental strand, 16662553 - 16662367
Alignment:
Q  22 tctcgtagcaccaagttcgggacattcttaaagccttcactcaaaatagcagcctgaacagctgcaccataagcaacagcctcatctgggttgatacgca 121  Q
    ||||| ||||||||||| || |||| ||||| |||||||||||| | |||||| || |||||||| |||||||||||||||||||| |||||||| | |     
T  16662553 tctcgcagcaccaagtttggaacatccttaatgccttcactcaacacagcagcttgcacagctgccccataagcaacagcctcatcagggttgatgctct 16662454  T
Q  122 tgaataattccttccccttgaaaaattctagcaatagatcctgcactttgggaatcctagacgagccacccacaagaacaatatcat 208  Q
    || | || |||||||| ||||| || |   ||||||  ||||||||||| ||||||||||||||||| || ||||||||||||||||    
T  16662453 tgcacaactccttcccattgaagaagttacgcaataattcctgcacttttggaatcctagacgagcccccgacaagaacaatatcat 16662367  T

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Target: chr2; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 18 - 146
Target Start/End: Original strand, 43625015 - 43625143
Alignment:
Q  18 aacatctcgtagcaccaagttcgggacattcttaaagccttcactcaaaatagcagcctgaacagctgcaccataagcaacagcctcatctgggttgata 117  Q
    ||||||||| |||||||| || || |||||||||| ||||| |||||||||||||||||| ||||||||||||||||||||||||||||| ||||| ||     
T  43625015 aacatctcgcagcaccaattttggaacattcttaatgcctttactcaaaatagcagcctggacagctgcaccataagcaacagcctcatcagggtttatg 43625114  T
Q  118 cgcatgaataattccttccccttgaaaaa 146  Q
    |    | || |||||||||||||||||||    
T  43625115 ctttcgcatgattccttccccttgaaaaa 43625143  T

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Target: chr2; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 30 - 255
Target Start/End: Complemental strand, 12245959 - 12245734
Alignment:
Q  30 caccaagttcgggacattcttaaagccttcactcaaaatagcagcctgaacagctgcaccataagcaacagcctcatctgggttgatacgcatgaataat 129  Q
    |||||| || || ||||||||||   ||| |||||| | |||||| ||||||||||| ||||||||||||||||| || ||||| || | | || | |||    
T  12245959 caccaaatttggaacattcttaacatctttactcaacaaagcagcttgaacagctgccccataagcaacagcctcgtcagggttaatgctcttgcacaat 12245860  T
Q  130 tccttccccttgaaaaattctagcaatagatcctgcactttgggaatcctagacgagccacccacaagaacaatatcatcaatatcattcttgtatatct 229  Q
    |||||||| |||||||| ||  | ||||| |  || ||||||||||||||||| || ||||| ||||| |||| |||||| |||  | ||||||  ||||    
T  12245859 tccttcccgttgaaaaagtcctgtaatagctgttggactttgggaatcctagaagatccaccaacaagtacaaaatcatctatagtactcttgtccatct 12245760  T
Q  230 ttgaatccctgagacaactgtcaaca 255  Q
    ||| |||| | | |||||| ||||||    
T  12245759 ttgcatccataatacaactctcaaca 12245734  T

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Target: chr2; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 28 - 209
Target Start/End: Original strand, 14703021 - 14703202
Alignment:
Q  28 agcaccaagttcgggacattcttaaagccttcactcaaaatagcagcctgaacagctgcaccataagcaacagcctcatctgggttgatacgcatgaata 127  Q
    |||||||| ||||| |||||||| | | |||||||||| | |||||||||||||||||| |||||||| ||||| ||||| ||||| || |   || | |    
T  14703021 agcaccaacttcggaacattcttgacgtcttcactcaacaaagcagcctgaacagctgccccataagctacagcttcatcagggttaatgctgttgcaca 14703120  T
Q  128 attccttccccttgaaaaattctagcaatagatcctgcactttgggaatcctagacgagccacccacaagaacaatatcatc 209  Q
    | |||||||||| |||||| ||  | ||||  | ||| ||||||||||||| ||| || ||||| |||||||||| ||||||    
T  14703121 actccttcccctggaaaaagtcctgtaataattgctgtactttgggaatccgagaagacccaccgacaagaacaacatcatc 14703202  T

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Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 30 - 255
Target Start/End: Original strand, 11999023 - 11999247
Alignment:
Q  30 caccaagttcgggacattcttaaagccttcactcaaaatagcagcctgaacagctgcaccataagcaacagcctcatctgggttgatacgcatgaataat 129  Q
    |||||| || || ||||||||||   |||||||||| | |||||| ||||||||||| |||||||| ||||||||||| ||||| || | | || | ||     
T  11999023 caccaaatttggaacattcttaacatcttcactcaacaaagcagcttgaacagctgccccataagctacagcctcatcagggttaatgctcttgcacaac 11999122  T
Q  130 tccttccccttgaaaaattctagcaatagatcctgcactttgggaatcctagacgagccacccacaagaacaatatcatcaatatcattcttgtatatct 229  Q
    |||||||| |||||||| ||  | ||||| |  || |||||||| |||||||| || ||||| ||||| |||| |||||| |||  | ||||||  ||||    
T  11999123 tccttcccgttgaaaaagtcatgtaatagctgttggactttggg-atcctagaagatccaccaacaagtacaacatcatctatagtactcttgtccatct 11999221  T
Q  230 ttgaatccctgagacaactgtcaaca 255  Q
    ||| |||| | | |||||| ||||||    
T  11999222 ttgcatccataatacaactctcaaca 11999247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 46 - 107
Target Start/End: Original strand, 7541857 - 7541918
Alignment:
Q  46 ttcttaaagccttcactcaaaatagcagcctgaacagctgcaccataagcaacagcctcatc 107  Q
    ||||||| |||| ||||||| |  ||||||||||||||||| ||||||||||||||||||||    
T  7541857 ttcttaacgcctccactcaacaatgcagcctgaacagctgccccataagcaacagcctcatc 7541918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 74 - 182
Target Start/End: Original strand, 12234349 - 12234456
Alignment:
Q  74 cctgaacagctgcaccataagcaacagcctcatctgggttgatacgcatgaataattccttccccttgaaaaattctagcaatagatcctgcactttggg 173  Q
    |||||||||||||  |||||||||| ||||| || ||||| |||| | || | |  ||||||||||||||||| ||  ||||||| | ||||||||||||    
T  12234349 cctgaacagctgcctcataagcaaccgcctc-tcagggttaatactcttgcacagctccttccccttgaaaaaatcctgcaatagttgctgcactttggg 12234447  T
Q  174 aatcctaga 182  Q
    |||||||||    
T  12234448 aatcctaga 12234456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 56 - 209
Target Start/End: Complemental strand, 12259108 - 12258955
Alignment:
Q  56 cttcactcaaaatagcagcctgaacagctgcaccataagcaacagcctcatctgggttgatacgcatgaataattccttccccttgaaaaattctagcaa 155  Q
    ||||||| || | ||||||||||| ||| || ||| |||| ||||||||||| || || || | | || | || || |||||||||||||| ||  | ||    
T  12259108 cttcacttaacaaagcagcctgaatagccgccccaaaagctacagcctcatcaggattaatgctcttgcacaactctttccccttgaaaaaatcctgtaa 12259009  T
Q  156 tagatcctgcactttgggaatcctagacgagccacccacaagaacaatatcatc 209  Q
    ||| | |||||||||| |||||||||| || ||||| ||||| |||| ||||||    
T  12259008 tagctgctgcactttgagaatcctagaagacccacctacaaggacaacatcatc 12258955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 113; Significance: 3e-57; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 18 - 214
Target Start/End: Complemental strand, 4679122 - 4678926
Alignment:
Q  18 aacatctcgtagcaccaagttcgggacattcttaaagccttcactcaaaatagcagcctgaacagctgcaccataagcaacagcctcatctgggttgata 117  Q
    ||||||||| ||||| || ||||||||||||||||| ||||| |||||||||||||| || | |||||||||||||||||||||||||||||||||||||    
T  4679122 aacatctcgcagcacaaaattcgggacattcttaaaaccttcgctcaaaatagcagcttggatagctgcaccataagcaacagcctcatctgggttgata 4679023  T
Q  118 cgcatgaataattccttccccttgaaaaattctagcaatagatcctgcactttgggaatcctagacgagccacccacaagaacaatatcatcaatat 214  Q
    | | || | || ||||||| ||| ||||| ||| |||||||||||||||||||||||||||| || || |||||||||||||||| |||||||||||    
T  4679022 ctcttgcacaaatccttccgcttaaaaaagtcttgcaatagatcctgcactttgggaatcctcgatgaaccacccacaagaacaacatcatcaatat 4678926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 18 - 208
Target Start/End: Original strand, 15594637 - 15594827
Alignment:
Q  18 aacatctcgtagcaccaagttcgggacattcttaaagccttcactcaaaatagcagcctgaacagctgcaccataagcaacagcctcatctgggttgata 117  Q
    ||||||| ||| ||||||||| || ||||| ||||| ||||||||||| | ||||||||| ||||||||||||||||||||||||||||| ||||||||     
T  15594637 aacatcttgtatcaccaagtttggaacatttttaaaaccttcactcaacaaagcagcctggacagctgcaccataagcaacagcctcatcagggttgatg 15594736  T
Q  118 cgcatgaataattccttccccttgaaaaattctagcaatagatcctgcactttgggaatcctagacgagccacccacaagaacaatatcat 208  Q
    | |||| | |||||||| |||| |||||| ||   |||||| |  |||||||||||||||||||| || ||||| ||||  ||||||||||    
T  15594737 ctcatgcacaattcctttccctcgaaaaaatccttcaatagttgttgcactttgggaatcctagaagacccaccaacaatgacaatatcat 15594827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 18 - 197
Target Start/End: Complemental strand, 34467353 - 34467174
Alignment:
Q  18 aacatctcgtagcaccaagttcgggacattcttaaagccttcactcaaaatagcagcctgaacagctgcaccataagcaacagcctcatctgggttgata 117  Q
    ||||||||| ||||||||||| || ||||| |||||||||| |||||| | |||||| || ||||||||  ||||||| ||||||||||| ||||||||     
T  34467353 aacatctcgcagcaccaagtttggaacattgttaaagcctttactcaacaaagcagcttgcacagctgcgacataagcgacagcctcatcagggttgatg 34467254  T
Q  118 cgcatgaataattccttccccttgaaaaattctagcaatagatcctgcactttgggaatcctagacgagccacccacaag 197  Q
    |   || |||  ||||| || |||||||| ||  ||||||| | ||||||||||||||||||||| ||||| || |||||    
T  34467253 ctattgcatagatccttaccattgaaaaagtcccgcaatagctgctgcactttgggaatcctagaagagcccccgacaag 34467174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 28 - 107
Target Start/End: Complemental strand, 52549501 - 52549422
Alignment:
Q  28 agcaccaagttcgggacattcttaaagccttcactcaaaatagcagcctgaacagctgcaccataagcaacagcctcatc 107  Q
    |||||||| || || ||||||| || |||||||||||| |  ||||||||||||||||| |||||||| ||| |||||||    
T  52549501 agcaccaactttggaacattctgaatgccttcactcaacaatgcagcctgaacagctgcgccataagctacaacctcatc 52549422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 85; Significance: 1e-40; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 37 - 209
Target Start/End: Original strand, 12528126 - 12528298
Alignment:
Q  37 ttcgggacattcttaaagccttcactcaaaatagcagcctgaacagctgcaccataagcaacagcctcatctgggttgatacgcatgaataattccttcc 136  Q
    ||||| ||| |||| | |||||||||||| | ||||||||||||||| ||||||||||||||||||||||| |||||||| | | || |||| ||||| |    
T  12528126 ttcggaacagtcttcatgccttcactcaacaaagcagcctgaacagcggcaccataagcaacagcctcatcagggttgatgctcttgtataactccttgc 12528225  T
Q  137 ccttgaaaaattctagcaatagatcctgcactttgggaatcctagacgagccacccacaagaacaatatcatc 209  Q
    |||||||||| ||  ||||||| | || ||||||||||||||||||||||||||| ||||| |||||||||||    
T  12528226 ccttgaaaaactcctgcaatagctgcttcactttgggaatcctagacgagccaccaacaagtacaatatcatc 12528298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 18 - 208
Target Start/End: Original strand, 43744419 - 43744609
Alignment:
Q  18 aacatctcgtagcaccaagttcgggacattcttaaagccttcactcaaaatagcagcctgaacagctgcaccataagcaacagcctcatctgggttgata 117  Q
    ||||||| | ||||||| ||| || || || ||||||||||||||||| | ||||||||| ||||||||||||  |||||| |||||||| ||||| ||     
T  43744419 aacatcttgcagcaccacgtttggaacttttttaaagccttcactcaacaaagcagcctgcacagctgcaccaatagcaactgcctcatcagggttaatg 43744518  T
Q  118 cgcatgaataattccttccccttgaaaaattctagcaatagatcctgcactttgggaatcctagacgagccacccacaagaacaatatcat 208  Q
      | |  | || ||||||||    ||||||||  ||||||| |  || ||||| ||||||||||| |||||||| |||||||||| |||||    
T  43744519 ttcttacacaaatccttccctgcaaaaaattcctgcaatagttgttgtacttttggaatcctagaggagccaccaacaagaacaacatcat 43744609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 18 - 113
Target Start/End: Original strand, 28219521 - 28219616
Alignment:
Q  18 aacatctcgtagcaccaagttcgggacattcttaaagccttcactcaaaatagcagcctgaacagctgcaccataagcaacagcctcatctgggtt 113  Q
    ||||||| | |||||||| ||||| || || ||||||||||||||||| | ||||||||| ||||||||||||||||||||||||||||| |||||    
T  28219521 aacatcttgcagcaccaacttcggaacttttttaaagccttcactcaacaaagcagcctgcacagctgcaccataagcaacagcctcatcagggtt 28219616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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