View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2916_low_20 (Length: 271)
Name: NF2916_low_20
Description: NF2916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2916_low_20 |
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| [»] scaffold0016 (2 HSPs) |
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| [»] scaffold1526 (1 HSPs) |
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| [»] scaffold0642 (1 HSPs) |
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| [»] scaffold0345 (1 HSPs) |
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| [»] scaffold0105 (1 HSPs) |
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Alignment Details
Target: scaffold0016 (Bit Score: 225; Significance: 1e-124; HSPs: 2)
Name: scaffold0016
Description:
Target: scaffold0016; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 9 - 256
Target Start/End: Original strand, 53873 - 54118
Alignment:
| Q |
9 |
gagatgaaggaccggattggaatgatgttagagagaaagtaagtattgtatcactattaggagcaacatcatcagccacaaattattcctatcttaaatg |
108 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53873 |
gagaagaaggaccggattggaatgatgttagagagaaagtaagtattgtatcactattaggagcaacatcatcagccacaaattattcctatcttaaatg |
53972 |
T |
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| Q |
109 |
ttttgatcctctttggtaatttggtcagtactcatttactaagacttagtaatattcaatttcatctcagacattttgtactaaataacatttattctat |
208 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53973 |
ttttgatcctctttggtaattttgtcagtactcatttactaagactt--taatattcaatttcatctcagacattttgtactaaataacatttattctaa |
54070 |
T |
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| Q |
209 |
gcaatgaagcccaaagttgaacaagttaaaagttgtaaagaatagcat |
256 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54071 |
gcaatgaagcccaaagttgaacaagttaaaagttgtaaagaatagcat |
54118 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 163 - 217
Target Start/End: Original strand, 37607 - 37661
Alignment:
| Q |
163 |
ttcaatttcatctcagacattttgtactaaataacatttattctatgcaatgaag |
217 |
Q |
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|||||||||||| ||| ||||||| |||||||||| ||||||||||||| |||| |
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| T |
37607 |
ttcaatttcatcgtagaaattttgttctaaataacaattattctatgcaacgaag |
37661 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 70; Significance: 1e-31; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 161 - 258
Target Start/End: Complemental strand, 21221759 - 21221662
Alignment:
| Q |
161 |
tattcaatttcatctcagacattttgtactaaataacatttattctatgcaatgaagcccaaagttgaacaagttaaaagttgtaaagaatagcatat |
258 |
Q |
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| T |
21221759 |
tattcaatttcatctcagacattttgttctaaataacaattattctatgcaacaaagctcaaaattgaacaagttcaaagttgtaaagaatagcatat |
21221662 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 143 - 231
Target Start/End: Complemental strand, 21140194 - 21140109
Alignment:
| Q |
143 |
tttactaagacttagtaatattcaatttcatctcagacattttgtactaaataacatttattctatgcaatgaagcccaaagttgaaca |
231 |
Q |
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| T |
21140194 |
tttactaagactta---atattcaatttcatctcagacattttgttctaaataacaattattctatgcaacgaagcccaaaattgaaca |
21140109 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 52 - 136
Target Start/End: Complemental strand, 21221922 - 21221835
Alignment:
| Q |
52 |
tattgtatcactattaggagcaacatcatcagccacaaattattcctatcttaaatgtt---ttgatcctctttggtaatttggtcag |
136 |
Q |
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|||| |||||||||||||||||||||||||||||||| || |||||||| || | |||| ||||||||||||||||||||| |||| |
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| T |
21221922 |
tattatatcactattaggagcaacatcatcagccacagataattcctattttcagtgttttcttgatcctctttggtaatttgttcag |
21221835 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 219 - 259
Target Start/End: Complemental strand, 21181555 - 21181515
Alignment:
| Q |
219 |
ccaaagttgaacaagttaaaagttgtaaagaatagcatatg |
259 |
Q |
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| T |
21181555 |
ccaaaattgaacaagttaaaagttgtaaagaatagcatatg |
21181515 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 163 - 211
Target Start/End: Original strand, 21245957 - 21246005
Alignment:
| Q |
163 |
ttcaatttcatctcagacattttgtactaaataacatttattctatgca |
211 |
Q |
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||||||||||||||| ||||||||| ||||||||| |||||||||||| |
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| T |
21245957 |
ttcaatttcatctcatacattttgttataaataacaattattctatgca |
21246005 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 163 - 217
Target Start/End: Complemental strand, 21200739 - 21200685
Alignment:
| Q |
163 |
ttcaatttcatctcagacattttgtactaaataacatttattctatgcaatgaag |
217 |
Q |
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|
||||||||||||| ||||||||||| |||||||||| ||| | ||||||| |||| |
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| T |
21200739 |
ttcaatttcatcttagacattttgttctaaataacaattactttatgcaacgaag |
21200685 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1526 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold1526
Description:
Target: scaffold1526; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 9 - 51
Target Start/End: Original strand, 1262 - 1304
Alignment:
| Q |
9 |
gagatgaaggaccggattggaatgatgttagagagaaagtaag |
51 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||| |
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| T |
1262 |
gagaagaaggaccggattggaatgatgttagagagaaagtaag |
1304 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 9 - 51
Target Start/End: Complemental strand, 15707400 - 15707358
Alignment:
| Q |
9 |
gagatgaaggaccggattggaatgatgttagagagaaagtaag |
51 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||| |
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| T |
15707400 |
gagaagaaggaccggattggaatgatgttagagagaaagtaag |
15707358 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 9 - 51
Target Start/End: Complemental strand, 3378271 - 3378229
Alignment:
| Q |
9 |
gagatgaaggaccggattggaatgatgttagagagaaagtaag |
51 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||| |
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| T |
3378271 |
gagaagaaggaccggattggaatgatgttagagagaaagtaag |
3378229 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0642 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0642
Description:
Target: scaffold0642; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 9 - 51
Target Start/End: Complemental strand, 4144 - 4102
Alignment:
| Q |
9 |
gagatgaaggaccggattggaatgatgttagagagaaagtaag |
51 |
Q |
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|||| |||| ||||||||||||||||||||||||||||||||| |
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| T |
4144 |
gagaagaagaaccggattggaatgatgttagagagaaagtaag |
4102 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0345 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0345
Description:
Target: scaffold0345; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 9 - 51
Target Start/End: Complemental strand, 14056 - 14014
Alignment:
| Q |
9 |
gagatgaaggaccggattggaatgatgttagagagaaagtaag |
51 |
Q |
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|||| |||| ||||||||||||||||||||||||||||||||| |
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| T |
14056 |
gagaagaagaaccggattggaatgatgttagagagaaagtaag |
14014 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0105 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0105
Description:
Target: scaffold0105; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 9 - 51
Target Start/End: Original strand, 24925 - 24967
Alignment:
| Q |
9 |
gagatgaaggaccggattggaatgatgttagagagaaagtaag |
51 |
Q |
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|||| |||| ||||||||||||||||||||||||||||||||| |
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| T |
24925 |
gagaagaagaaccggattggaatgatgttagagagaaagtaag |
24967 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 9 - 51
Target Start/End: Complemental strand, 44495546 - 44495504
Alignment:
| Q |
9 |
gagatgaaggaccggattggaatgatgttagagagaaagtaag |
51 |
Q |
| |
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|||| |||| ||||||||||||||||||||||||||||||||| |
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| T |
44495546 |
gagaagaagaaccggattggaatgatgttagagagaaagtaag |
44495504 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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