View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2916_low_24 (Length: 246)

Name: NF2916_low_24
Description: NF2916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2916_low_24
NF2916_low_24
[»] chr7 (1 HSPs)
chr7 (13-148)||(41593940-41594075)
[»] chr8 (1 HSPs)
chr8 (13-148)||(12869703-12869838)
[»] chr5 (3 HSPs)
chr5 (13-148)||(14006809-14006944)
chr5 (26-148)||(23123876-23123990)
chr5 (13-58)||(23123791-23123836)
[»] chr2 (1 HSPs)
chr2 (13-148)||(43522544-43522679)
[»] chr3 (2 HSPs)
chr3 (26-148)||(22512451-22512565)
chr3 (13-58)||(22512366-22512411)
[»] chr4 (1 HSPs)
chr4 (91-135)||(32103271-32103315)


Alignment Details
Target: chr7 (Bit Score: 132; Significance: 1e-68; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 13 - 148
Target Start/End: Complemental strand, 41594075 - 41593940
Alignment:
Q  13 aatatgaacaaaatgtgggtgggccgtgataacattgctactgccaatctgccataacaagagaagagaatcacataacaaatgcaaggttcctcaagat 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  41594075 aatatgaacaaaatgtgggtgggccgtgataacattgctactgccaatctgccataacaagagaagagaatcacataacaaatgcaaggttgctcaagat 41593976  T
Q  113 gtgcataacaacaaaaatatgaaaacattgcagttt 148  Q
    ||||||||||||||||||||||||||||||||||||    
T  41593975 gtgcataacaacaaaaatatgaaaacattgcagttt 41593940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 128; Significance: 3e-66; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 13 - 148
Target Start/End: Original strand, 12869703 - 12869838
Alignment:
Q  13 aatatgaacaaaatgtgggtgggccgtgataacattgctactgccaatctgccataacaagagaagagaatcacataacaaatgcaaggttcctcaagat 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  12869703 aatatgaacaaaatgtgggtgggccgtgataacattgctactgccaatctgccataacaagagaagagaatcacataacaaatgcaaggttgctcaagat 12869802  T
Q  113 gtgcataacaacaaaaatatgaaaacattgcagttt 148  Q
    |||||||||||||||||||||||||||||| |||||    
T  12869803 gtgcataacaacaaaaatatgaaaacattgaagttt 12869838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 128; Significance: 3e-66; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 13 - 148
Target Start/End: Complemental strand, 14006944 - 14006809
Alignment:
Q  13 aatatgaacaaaatgtgggtgggccgtgataacattgctactgccaatctgccataacaagagaagagaatcacataacaaatgcaaggttcctcaagat 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||    
T  14006944 aatatgaacaaaatgtgggtgggccgtgataacattgctactgccaatctgccataacaagagatgagaatcacataacaaatgcaaggttgctcaagat 14006845  T
Q  113 gtgcataacaacaaaaatatgaaaacattgcagttt 148  Q
    ||||||||||||||||||||||||||||||||||||    
T  14006844 gtgcataacaacaaaaatatgaaaacattgcagttt 14006809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 26 - 148
Target Start/End: Original strand, 23123876 - 23123990
Alignment:
Q  26 tgtgggtgggccgtgataacattgctactgccaatctgccataacaagagaagagaatcacataacaaatgcaaggttcctcaagatgtgcataacaaca 125  Q
    |||||||||||||||||||||||||||||||        ||||||||||| ||||||||||||||||| ||||||||| |||||||||||||||||||||    
T  23123876 tgtgggtgggccgtgataacattgctactgc--------cataacaagagcagagaatcacataacaattgcaaggttgctcaagatgtgcataacaaca 23123967  T
Q  126 aaaatatgaaaacattgcagttt 148  Q
    ||||||||||||||||| |||||    
T  23123968 aaaatatgaaaacattgtagttt 23123990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 13 - 58
Target Start/End: Original strand, 23123791 - 23123836
Alignment:
Q  13 aatatgaacaaaatgtgggtgggccgtgataacattgctactgcca 58  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||    
T  23123791 aatatgaacaaaatgtgggtgagccgtgataacattgctactgcca 23123836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 128; Significance: 3e-66; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 13 - 148
Target Start/End: Complemental strand, 43522679 - 43522544
Alignment:
Q  13 aatatgaacaaaatgtgggtgggccgtgataacattgctactgccaatctgccataacaagagaagagaatcacataacaaatgcaaggttcctcaagat 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||    
T  43522679 aatatgaacaaaatgtgggtgggccgtgataacattgctactgccaatctgccatagcaagagaagagaatcacataacaaatgcaaggttgctcaagat 43522580  T
Q  113 gtgcataacaacaaaaatatgaaaacattgcagttt 148  Q
    ||||||||||||||||||||||||||||||||||||    
T  43522579 gtgcataacaacaaaaatatgaaaacattgcagttt 43522544  T

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Target: chr3 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 26 - 148
Target Start/End: Original strand, 22512451 - 22512565
Alignment:
Q  26 tgtgggtgggccgtgataacattgctactgccaatctgccataacaagagaagagaatcacataacaaatgcaaggttcctcaagatgtgcataacaaca 125  Q
    ||||||||| |||||||||||||||||||| ||        |||||||| |||||||||||||||||||||||||||| ||||||||||||||||| |||    
T  22512451 tgtgggtggcccgtgataacattgctactgtca--------taacaagataagagaatcacataacaaatgcaaggttgctcaagatgtgcataactaca 22512542  T
Q  126 aaaatatgaaaacattgcagttt 148  Q
    ||||  |||||| ||| ||||||    
T  22512543 aaaaactgaaaatattccagttt 22512565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 13 - 58
Target Start/End: Original strand, 22512366 - 22512411
Alignment:
Q  13 aatatgaacaaaatgtgggtgggccgtgataacattgctactgcca 58  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  22512366 aatatgaacaaaatgtgggtgggccgtgataacattgctactgcca 22512411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 91 - 135
Target Start/End: Original strand, 32103271 - 32103315
Alignment:
Q  91 caaatgcaaggttcctcaagatgtgcataacaacaaaaatatgaa 135  Q
    |||||| | |||| |||||||||||||||||||||||||||||||    
T  32103271 caaatgaacggttgctcaagatgtgcataacaacaaaaatatgaa 32103315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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