View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2916_low_27 (Length: 220)

Name: NF2916_low_27
Description: NF2916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2916_low_27
NF2916_low_27
[»] chr2 (4 HSPs)
chr2 (56-204)||(3577204-3577345)
chr2 (56-204)||(30238661-30238806)
chr2 (123-157)||(6565692-6565726)
chr2 (127-157)||(4009627-4009657)
[»] chr1 (2 HSPs)
chr1 (123-158)||(18424476-18424511)
chr1 (123-157)||(32637964-32637998)
[»] chr8 (2 HSPs)
chr8 (123-160)||(15962549-15962586)
chr8 (127-157)||(8908451-8908481)
[»] chr7 (1 HSPs)
chr7 (123-155)||(24040379-24040411)
[»] scaffold0078 (1 HSPs)
scaffold0078 (123-158)||(13591-13626)
[»] chr3 (1 HSPs)
chr3 (123-158)||(4649736-4649771)
[»] chr6 (1 HSPs)
chr6 (127-157)||(16663029-16663059)


Alignment Details
Target: chr2 (Bit Score: 118; Significance: 2e-60; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 56 - 204
Target Start/End: Complemental strand, 3577345 - 3577204
Alignment:
Q  56 aaggaaaaactattatttattgatcacttttgttagggctaagctaagtatcacatcagtcaacaacttgcagcccacaaaatattagaagaaattctaa 155  Q
    |||||||||||||||||||||||||||||||||||||||||||     ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3577345 aaggaaaaactattatttattgatcacttttgttagggctaag-----tatcacatcagtcaacaacttgcagcccacaaaatattagaagaaattctaa 3577251  T
Q  156 catatgcgcgcgatagtaacaaaagttagaagaattgaaacctgcttcg 204  Q
    ||||||  |||||||||||||||||||||||||||||||||||||||||    
T  3577250 catatg--cgcgatagtaacaaaagttagaagaattgaaacctgcttcg 3577204  T

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Target: chr2; HSP #2
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 56 - 204
Target Start/End: Original strand, 30238661 - 30238806
Alignment:
Q  56 aaggaaaaactattatttattgatcacttttgttagggctaagctaagt-----atcacatcagtcaacaacttgcagcccacaaaatattagaagaaat 150  Q
    |||||||||||||||||||||||||||||||||||||||||     |||     ||||||||||||||||||||||||   |||||||||||||||||||    
T  30238661 aaggaaaaactattatttattgatcacttttgttagggcta-----agtatcacatcacatcagtcaacaacttgcag-ggacaaaatattagaagaaat 30238754  T
Q  151 tctaacatatgcgcgcgatagtaacaaaagttagaagaattgaaacctgcttcg 204  Q
    ||||||||||  ||||||||||||||||||||||||||||||||||||||||||    
T  30238755 tctaacatat--gcgcgatagtaacaaaagttagaagaattgaaacctgcttcg 30238806  T

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Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 123 - 157
Target Start/End: Complemental strand, 6565726 - 6565692
Alignment:
Q  123 ttgcagcccacaaaatattagaagaaattctaaca 157  Q
    |||||||||||||||||||||||||||||||||||    
T  6565726 ttgcagcccacaaaatattagaagaaattctaaca 6565692  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 127 - 157
Target Start/End: Complemental strand, 4009657 - 4009627
Alignment:
Q  127 agcccacaaaatattagaagaaattctaaca 157  Q
    |||||||||||||||||||||||||||||||    
T  4009657 agcccacaaaatattagaagaaattctaaca 4009627  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 123 - 158
Target Start/End: Original strand, 18424476 - 18424511
Alignment:
Q  123 ttgcagcccacaaaatattagaagaaattctaacat 158  Q
    ||||||||||||||||||||||||||||||||||||    
T  18424476 ttgcagcccacaaaatattagaagaaattctaacat 18424511  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 123 - 157
Target Start/End: Complemental strand, 32637998 - 32637964
Alignment:
Q  123 ttgcagcccacaaaatattagaagaaattctaaca 157  Q
    |||||||||||||||||||||||||||||||||||    
T  32637998 ttgcagcccacaaaatattagaagaaattctaaca 32637964  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 123 - 160
Target Start/End: Original strand, 15962549 - 15962586
Alignment:
Q  123 ttgcagcccacaaaatattagaagaaattctaacatat 160  Q
    ||||||| ||||||||||||||||||||||||||||||    
T  15962549 ttgcagcacacaaaatattagaagaaattctaacatat 15962586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 127 - 157
Target Start/End: Complemental strand, 8908481 - 8908451
Alignment:
Q  127 agcccacaaaatattagaagaaattctaaca 157  Q
    |||||||||||||||||||||||||||||||    
T  8908481 agcccacaaaatattagaagaaattctaaca 8908451  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 123 - 155
Target Start/End: Original strand, 24040379 - 24040411
Alignment:
Q  123 ttgcagcccacaaaatattagaagaaattctaa 155  Q
    |||||||||||||||||||||||||||||||||    
T  24040379 ttgcagcccacaaaatattagaagaaattctaa 24040411  T

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Target: scaffold0078 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0078
Description:

Target: scaffold0078; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 123 - 158
Target Start/End: Complemental strand, 13626 - 13591
Alignment:
Q  123 ttgcagcccacaaaatattagaagaaattctaacat 158  Q
    ||||| ||||||||||||||||||||||||||||||    
T  13626 ttgcatcccacaaaatattagaagaaattctaacat 13591  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 123 - 158
Target Start/End: Original strand, 4649736 - 4649771
Alignment:
Q  123 ttgcagcccacaaaatattagaagaaattctaacat 158  Q
    ||||| ||||||||||||||||||||||||||||||    
T  4649736 ttgcaacccacaaaatattagaagaaattctaacat 4649771  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 127 - 157
Target Start/End: Complemental strand, 16663059 - 16663029
Alignment:
Q  127 agcccacaaaatattagaagaaattctaaca 157  Q
    |||||||||||||||||||||||||||||||    
T  16663059 agcccacaaaatattagaagaaattctaaca 16663029  T

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